RNA–Protein interactions for RNA: ENST00000472442.2

SCAMP4-207, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2

Gene SCAMP4, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-207ENST00000472442 NCOA3Q9Y6Q9 1424 aa16.43■□□□□ 0.22
SCAMP4-207ENST00000472442 DCCP43146 1447 aa16.43■□□□□ 0.22
SCAMP4-207ENST00000472442 KDM4FA0A1W2PPD8 638 aa16.43■□□□□ 0.22
SCAMP4-207ENST00000472442 TNPO1Q92973 898 aaKnown RBP16.43■□□□□ 0.22
SCAMP4-207ENST00000472442 API5Q9BZZ5 524 aaKnown RBP16.43■□□□□ 0.22
SCAMP4-207ENST00000472442 DDIT3P35638 169 aa16.42■□□□□ 0.22
SCAMP4-207ENST00000472442 AXIN2Q9Y2T1 843 aa16.42■□□□□ 0.22
SCAMP4-207ENST00000472442 ALS2Q96Q42 1657 aa16.42■□□□□ 0.22
SCAMP4-207ENST00000472442 SMC5Q8IY18 1101 aa16.42■□□□□ 0.22
SCAMP4-207ENST00000472442 HAP1P54257 671 aaPredicted RBP16.41■□□□□ 0.22
SCAMP4-207ENST00000472442 C1orf115Q9H7X2 142 aa16.41■□□□□ 0.22
SCAMP4-207ENST00000472442 MED1Q15648 1581 aaPredicted RBP16.41■□□□□ 0.22
SCAMP4-207ENST00000472442 NCAPD2Q15021 1401 aa16.39■□□□□ 0.21
SCAMP4-207ENST00000472442 LMTK3Q96Q04 1460 aa16.39■□□□□ 0.21
SCAMP4-207ENST00000472442 SLC4A2P04920 1241 aa16.39■□□□□ 0.21
SCAMP4-207ENST00000472442 ANKRD24Q8TF21 1146 aa16.39■□□□□ 0.21
SCAMP4-207ENST00000472442 HSP90AB1P08238 724 aaKnown RBP16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 INTS3Q68E01 1043 aaKnown RBP16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 CADPS2Q86UW7 1296 aa16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 GBP4Q96PP9 640 aa16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 CEMIPQ8WUJ3 1361 aa16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 SIRT2Q8IXJ6 389 aa16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 XIRP1Q702N8 1843 aaKnown RBP16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 STRCQ7RTU9 1775 aa16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 TAF7Q15545 349 aaPredicted RBP16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 G2E3Q7L622 706 aa16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 LGR6Q9HBX8 967 aa16.38■□□□□ 0.21
SCAMP4-207ENST00000472442 RBM25P49756 843 aaKnown RBP16.37■□□□□ 0.21
SCAMP4-207ENST00000472442 ZC3H6P61129 1189 aaKnown RBP16.37■□□□□ 0.21
SCAMP4-207ENST00000472442 SNX21Q969T3 373 aa16.37■□□□□ 0.21
SCAMP4-207ENST00000472442 PTPRCP08575 1304 aa16.37■□□□□ 0.21
SCAMP4-207ENST00000472442 CHMP4BQ9H444 224 aaKnown RBP16.37■□□□□ 0.21
SCAMP4-207ENST00000472442 RAB3GAP1Q15042 981 aa16.36■□□□□ 0.21
SCAMP4-207ENST00000472442 FOXD4L1Q9NU39 408 aa16.36■□□□□ 0.21
SCAMP4-207ENST00000472442 RGPD5Q99666 1765 aa16.36■□□□□ 0.21
SCAMP4-207ENST00000472442 TPM2P07951 284 aa16.36■□□□□ 0.21
SCAMP4-207ENST00000472442 BABAM1Q9NWV8 329 aa16.35■□□□□ 0.21
SCAMP4-207ENST00000472442 CIZ1Q9ULV3 898 aaPredicted RBP16.35■□□□□ 0.21
SCAMP4-207ENST00000472442 CAMTA1Q9Y6Y1 1673 aa16.35■□□□□ 0.21
SCAMP4-207ENST00000472442 NUCB1Q02818 461 aa16.35■□□□□ 0.21
SCAMP4-207ENST00000472442 SKOR2Q2VWA4 1001 aaPredicted RBP16.35■□□□□ 0.21
SCAMP4-207ENST00000472442 PXDNQ92626 1479 aa16.34■□□□□ 0.21
SCAMP4-207ENST00000472442 ERBB3P21860 1342 aa16.34■□□□□ 0.21
SCAMP4-207ENST00000472442 NPHP3Q7Z494 1330 aa16.34■□□□□ 0.21
SCAMP4-207ENST00000472442 LMO7Q8WWI1 1683 aa16.33■□□□□ 0.21
SCAMP4-207ENST00000472442 CABLES1Q8TDN4 633 aa16.33■□□□□ 0.21
SCAMP4-207ENST00000472442 PLEKHO1Q53GL0 409 aaPredicted RBP16.33■□□□□ 0.2
SCAMP4-207ENST00000472442 AKAP4Q5JQC9 854 aa16.33■□□□□ 0.2
SCAMP4-207ENST00000472442 ZNF530Q6P9A1 599 aaPredicted RBP16.33■□□□□ 0.2
SCAMP4-207ENST00000472442 KIAA1211Q6ZU35 1233 aa16.33■□□□□ 0.2
SCAMP4-207ENST00000472442 LNPKQ9C0E8 428 aa16.33■□□□□ 0.2
SCAMP4-207ENST00000472442 CD2BP2O95400 341 aaKnown RBP16.32■□□□□ 0.2
SCAMP4-207ENST00000472442 NECTIN2Q92692 538 aa16.32■□□□□ 0.2
SCAMP4-207ENST00000472442 TNS3Q68CZ2 1445 aa16.32■□□□□ 0.2
SCAMP4-207ENST00000472442 F6X3S4 739 aa16.32■□□□□ 0.2
SCAMP4-207ENST00000472442 AMOTQ4VCS5 1084 aa16.32■□□□□ 0.2
SCAMP4-207ENST00000472442 MPRIPQ6WCQ1 1025 aa16.32■□□□□ 0.2
SCAMP4-207ENST00000472442 FAM208AQ9UK61 1670 aaKnown RBP16.31■□□□□ 0.2
SCAMP4-207ENST00000472442 CCDC173Q0VFZ6 552 aa16.31■□□□□ 0.2
SCAMP4-207ENST00000472442 NASPP49321 788 aaPredicted RBP16.31■□□□□ 0.2
SCAMP4-207ENST00000472442 CCDC30Q5VVM6 783 aa16.31■□□□□ 0.2
SCAMP4-207ENST00000472442 BRINP3Q76B58 766 aa16.31■□□□□ 0.2
SCAMP4-207ENST00000472442 CHD1LQ86WJ1 897 aa16.31■□□□□ 0.2
SCAMP4-207ENST00000472442 SPATA31A3Q5VYP0 1347 aa16.31■□□□□ 0.2
SCAMP4-207ENST00000472442 ZNF335Q9H4Z2 1342 aaPredicted RBP16.31■□□□□ 0.2
SCAMP4-207ENST00000472442 COL18A1P39060 1754 aa16.3■□□□□ 0.2
SCAMP4-207ENST00000472442 GCC1Q96CN9 775 aa16.3■□□□□ 0.2
SCAMP4-207ENST00000472442 KIF2CQ99661 725 aa16.3■□□□□ 0.2
SCAMP4-207ENST00000472442 ATP10DQ9P241 1426 aa16.3■□□□□ 0.2
SCAMP4-207ENST00000472442 KCNQ3O43525 872 aa16.3■□□□□ 0.2
SCAMP4-207ENST00000472442 PTMSP20962 102 aa16.3■□□□□ 0.2
SCAMP4-207ENST00000472442 MEIS3Q99687 375 aa16.3■□□□□ 0.2
SCAMP4-207ENST00000472442 STK31Q9BXU1 1019 aa16.3■□□□□ 0.2
SCAMP4-207ENST00000472442 SOS1Q07889 1333 aaPredicted RBP16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 SSFA2P28290 1259 aa16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 EIF4A1P60842 406 aaKnown RBP16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 FLIIQ13045 1269 aa16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 PDCL3Q9H2J4 239 aa16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 KDM3BQ7LBC6 1761 aa16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 ZSCAN30Q86W11 494 aa16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 PPP1R9BQ96SB3 815 aa16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 CRYBG1Q9Y4K1 1723 aa16.29■□□□□ 0.2
SCAMP4-207ENST00000472442 RNMTO43148 476 aaKnown RBP16.28■□□□□ 0.2
SCAMP4-207ENST00000472442 ANKRD45Q5TZF3 282 aa16.28■□□□□ 0.2
SCAMP4-207ENST00000472442 SLC4A10Q6U841 1118 aa16.28■□□□□ 0.2
SCAMP4-207ENST00000472442 K7ELQ4 463 aaPredicted RBP16.27■□□□□ 0.2
SCAMP4-207ENST00000472442 RBM42Q9BTD8 480 aaKnown RBP16.27■□□□□ 0.2
SCAMP4-207ENST00000472442 CHRNA2Q15822 529 aa16.27■□□□□ 0.19
SCAMP4-207ENST00000472442 C1orf141Q5JVX7 400 aa16.27■□□□□ 0.19
SCAMP4-207ENST00000472442 CEP85Q6P2H3 762 aa16.27■□□□□ 0.19
SCAMP4-207ENST00000472442 ANKRD44Q8N8A2 993 aa16.27■□□□□ 0.19
SCAMP4-207ENST00000472442 TEFQ10587 303 aa16.26■□□□□ 0.19
SCAMP4-207ENST00000472442 ANP32BQ92688 251 aaKnown RBP16.26■□□□□ 0.19
SCAMP4-207ENST00000472442 BTBD11A6QL63 1104 aa16.26■□□□□ 0.19
SCAMP4-207ENST00000472442 HDGFL1Q5TGJ6 251 aa16.26■□□□□ 0.19
SCAMP4-207ENST00000472442 DDX49Q9Y6V7 483 aaKnown RBP16.26■□□□□ 0.19
SCAMP4-207ENST00000472442 GOLGA6L22H0YM25 854 aa16.26■□□□□ 0.19
SCAMP4-207ENST00000472442 FKBP5Q13451 457 aaPredicted RBP16.26■□□□□ 0.19
SCAMP4-207ENST00000472442 BMP2KLQ5H9B9 411 aa16.26■□□□□ 0.19
SCAMP4-207ENST00000472442 DCTPP1Q9H773 170 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms