RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	WEE1	P30291	646 aa		7	□□□□□ -1.29
PTCD3-209	ENST00000472044	CLN3	Q13286	438 aa		7	□□□□□ -1.29
PTCD3-209	ENST00000472044	MEIOB	Q8N635	442 aa		7	□□□□□ -1.29
PTCD3-209	ENST00000472044	TSEN2	Q8NCE0	465 aa	Known RBP	7	□□□□□ -1.29
PTCD3-209	ENST00000472044	GAS2L2	Q8NHY3	880 aa		7	□□□□□ -1.29
PTCD3-209	ENST00000472044	HINFP	Q9BQA5	517 aa		7	□□□□□ -1.29
PTCD3-209	ENST00000472044	ESYT1	Q9BSJ8	1104 aa		7	□□□□□ -1.29
PTCD3-209	ENST00000472044	GNE	Q9Y223	722 aa	Known RBP	7	□□□□□ -1.29
PTCD3-209	ENST00000472044		A0A1W2PRU2	124 aa		6.99	□□□□□ -1.29
PTCD3-209	ENST00000472044	IL2RA	P01589	272 aa		6.99	□□□□□ -1.29
PTCD3-209	ENST00000472044	TAS1R3	Q7RTX0	852 aa		6.99	□□□□□ -1.29
PTCD3-209	ENST00000472044	TXNDC2	Q86VQ3	553 aa		6.99	□□□□□ -1.29
PTCD3-209	ENST00000472044	CNKSR1	Q969H4	720 aa		6.99	□□□□□ -1.29
PTCD3-209	ENST00000472044	ARHGEF10L	Q9HCE6	1279 aa		6.99	□□□□□ -1.29
PTCD3-209	ENST00000472044	CXXC1	Q9P0U4	656 aa	Predicted RBP	6.99	□□□□□ -1.29
PTCD3-209	ENST00000472044	IGFBP4	P22692	258 aa		6.98	□□□□□ -1.29
PTCD3-209	ENST00000472044	SMTN	P53814	917 aa		6.98	□□□□□ -1.29
PTCD3-209	ENST00000472044		A6NJY4	79 aa		6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	CDK2AP1	O14519	115 aa		6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	CAPN5	O15484	640 aa	Predicted RBP	6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	PRMT3	O60678	531 aa		6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	ARID4A	P29374	1257 aa	Predicted RBP	6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	FOXK2	Q01167	660 aa		6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	TNS4	Q8IZW8	715 aa		6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	STAG2	Q8N3U4	1231 aa		6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	TSEN34	Q9BSV6	310 aa	Known RBP	6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	RAB6B	Q9NRW1	208 aa		6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	SCHIP1	Q9P0W5	487 aa	Predicted RBP	6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	SERTAD1	Q9UHV2	236 aa		6.97	□□□□□ -1.29
PTCD3-209	ENST00000472044	FOXO3	O43524	673 aa		6.96	□□□□□ -1.3
PTCD3-209	ENST00000472044	GPC1	P35052	558 aa		6.96	□□□□□ -1.3
PTCD3-209	ENST00000472044	SMCP	P49901	116 aa	Predicted RBP	6.96	□□□□□ -1.3
PTCD3-209	ENST00000472044	CENPC	Q03188	943 aa		6.96	□□□□□ -1.3
PTCD3-209	ENST00000472044	PRIMPOL	Q96LW4	560 aa		6.96	□□□□□ -1.3
PTCD3-209	ENST00000472044	AGBL1	Q96MI9	1066 aa		6.96	□□□□□ -1.3
PTCD3-209	ENST00000472044	FHDC1	Q9C0D6	1143 aa	Predicted RBP	6.96	□□□□□ -1.3
PTCD3-209	ENST00000472044	ATAD2	Q6PL18	1390 aa		6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	SPINT1	O43278	529 aa		6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	C21orf2	O43822	256 aa		6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	DGAT1	O75907	488 aa		6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	RELB	Q01201	579 aa		6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	CTC1	Q2NKJ3	1217 aa		6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	POTEA	Q6S8J7	498 aa		6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	CCER1	Q8TC90	406 aa	Predicted RBP	6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	COL26A1	Q96A83	441 aa		6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	6.95	□□□□□ -1.3
PTCD3-209	ENST00000472044	FAM187A	A6NFU0	413 aa		6.94	□□□□□ -1.3
PTCD3-209	ENST00000472044	NRG2	O14511	850 aa	Predicted RBP	6.94	□□□□□ -1.3
PTCD3-209	ENST00000472044	RNF144A	P50876	292 aa	Predicted RBP	6.94	□□□□□ -1.3
PTCD3-209	ENST00000472044	TLR1	Q15399	786 aa		6.94	□□□□□ -1.3
PTCD3-209	ENST00000472044	LINC00528	Q8N1L1	170 aa		6.94	□□□□□ -1.3
PTCD3-209	ENST00000472044	SCG3	Q8WXD2	468 aa	Known RBP	6.94	□□□□□ -1.3
PTCD3-209	ENST00000472044	NLRP3	Q96P20	1036 aa		6.94	□□□□□ -1.3
PTCD3-209	ENST00000472044	ZNF395	Q9H8N7	513 aa	Predicted RBP	6.94	□□□□□ -1.3
PTCD3-209	ENST00000472044	PTCD1	O75127	700 aa	Known RBP	6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	LGR5	O75473	907 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	PSMA6	P60900	246 aa	Known RBP	6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	FKBP5	Q13451	457 aa	Predicted RBP	6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	LAPTM4A	Q15012	233 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	PPARGC1B	Q86YN6	1023 aa	Known RBP	6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	SLC9A9	Q8IVB4	645 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	ZNF295-AS1	Q8N0V1	137 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	CRIPAK	Q8N1N5	446 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	NBPF15	Q8N660	670 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	C2orf49	Q9BVC5	232 aa	Predicted RBP	6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	GRIP2	Q9C0E4	1043 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	MTMR7	Q9Y216	660 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	IVNS1ABP	Q9Y6Y0	642 aa		6.93	□□□□□ -1.3
PTCD3-209	ENST00000472044	MEN1	O00255	615 aa		6.92	□□□□□ -1.3
PTCD3-209	ENST00000472044	GFRA3	O60609	400 aa		6.92	□□□□□ -1.3
PTCD3-209	ENST00000472044	UPP2	O95045	317 aa		6.92	□□□□□ -1.3
PTCD3-209	ENST00000472044	MRPL14	Q6P1L8	145 aa	Known RBP	6.92	□□□□□ -1.3
PTCD3-209	ENST00000472044	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	6.92	□□□□□ -1.3
PTCD3-209	ENST00000472044	PODXL2	Q9NZ53	605 aa		6.92	□□□□□ -1.3
PTCD3-209	ENST00000472044	HIRA	P54198	1017 aa	Predicted RBP	6.91	□□□□□ -1.3
PTCD3-209	ENST00000472044	TEAD4	Q15561	434 aa		6.91	□□□□□ -1.3
PTCD3-209	ENST00000472044	PURB	Q96QR8	312 aa	Known RBP	6.91	□□□□□ -1.3
PTCD3-209	ENST00000472044	GZF1	Q9H116	711 aa	Predicted RBP	6.91	□□□□□ -1.3
PTCD3-209	ENST00000472044	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	6.91	□□□□□ -1.3
PTCD3-209	ENST00000472044	USP3	Q9Y6I4	520 aa		6.91	□□□□□ -1.3
PTCD3-209	ENST00000472044	SPATA31C2	B4DYI2	1134 aa		6.9	□□□□□ -1.3
PTCD3-209	ENST00000472044	PPP1R12B	O60237	982 aa	Predicted RBP	6.9	□□□□□ -1.3
PTCD3-209	ENST00000472044	PKDCC	Q504Y2	493 aa		6.9	□□□□□ -1.3
PTCD3-209	ENST00000472044	RHBDD1	Q8TEB9	315 aa		6.9	□□□□□ -1.3
PTCD3-209	ENST00000472044	INSM2	Q96T92	566 aa	Predicted RBP	6.9	□□□□□ -1.3
PTCD3-209	ENST00000472044	EGFL7	Q9UHF1	273 aa		6.9	□□□□□ -1.3
PTCD3-209	ENST00000472044	NOS2	P35228	1153 aa		6.89	□□□□□ -1.31
PTCD3-209	ENST00000472044	SCNN1A	P37088	669 aa		6.89	□□□□□ -1.31
PTCD3-209	ENST00000472044	CTSO	P43234	321 aa	Predicted RBP	6.89	□□□□□ -1.31
PTCD3-209	ENST00000472044	FOXD4L5	Q5VV16	416 aa	Predicted RBP	6.89	□□□□□ -1.31
PTCD3-209	ENST00000472044	NIFK	Q9BYG3	293 aa	Known RBP	6.89	□□□□□ -1.31
PTCD3-209	ENST00000472044	CHMP3	Q9Y3E7	222 aa		6.89	□□□□□ -1.31
PTCD3-209	ENST00000472044	SERTM1	A2A2V5	107 aa		6.88	□□□□□ -1.31
PTCD3-209	ENST00000472044	EML1	O00423	815 aa		6.88	□□□□□ -1.31
PTCD3-209	ENST00000472044	AXIN1	O15169	862 aa		6.88	□□□□□ -1.31
PTCD3-209	ENST00000472044	BMP2	P12643	396 aa		6.88	□□□□□ -1.31
PTCD3-209	ENST00000472044	GTF2E1	P29083	439 aa	Predicted RBP	6.88	□□□□□ -1.31
PTCD3-209	ENST00000472044	SERPINB4	P48594	390 aa		6.88	□□□□□ -1.31
PTCD3-209	ENST00000472044	SCARF1	Q14162	830 aa		6.88	□□□□□ -1.31

Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms