RNA–Protein interactions for RNA: ENST00000471887.1

HDAC9-221, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 446 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-221ENST00000471887 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L15C9J2P7 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L10C9JJH3 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L13C9JLJ4 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L12C9JPN9 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L11C9JVI0 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L21D6R901 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L18D6R9N7 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L22D6RA61 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L17D6RBQ6 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L19D6RCP7 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L20D6RJB6 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 BACH1O14867 736 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 CENPCQ03188 943 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 USP17L24Q0WX57 530 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 PTK7Q13308 1070 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 CDCA8Q53HL2 280 aa10.19□□□□□ -0.78
HDAC9-221ENST00000471887 SOBPA7XYQ1 873 aa10.18□□□□□ -0.78
HDAC9-221ENST00000471887 TLR1Q15399 786 aa10.18□□□□□ -0.78
HDAC9-221ENST00000471887 LYSMD3Q7Z3D4 306 aa10.18□□□□□ -0.78
HDAC9-221ENST00000471887 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.18□□□□□ -0.78
HDAC9-221ENST00000471887 ARID3AQ99856 593 aa10.18□□□□□ -0.78
HDAC9-221ENST00000471887 ZNF358Q9NW07 568 aa10.18□□□□□ -0.78
HDAC9-221ENST00000471887 SERTAD1Q9UHV2 236 aa10.18□□□□□ -0.78
HDAC9-221ENST00000471887 GTF2E1P29083 439 aaPredicted RBP10.17□□□□□ -0.78
HDAC9-221ENST00000471887 SRPK2P78362 688 aaKnown RBP10.17□□□□□ -0.78
HDAC9-221ENST00000471887 SLC4A9Q96Q91 983 aa10.17□□□□□ -0.78
HDAC9-221ENST00000471887 ZSCAN10Q96SZ4 725 aaPredicted RBP10.17□□□□□ -0.78
HDAC9-221ENST00000471887 GRIP2Q9C0E4 1043 aa10.17□□□□□ -0.78
HDAC9-221ENST00000471887 SMTNP53814 917 aa10.16□□□□□ -0.78
HDAC9-221ENST00000471887 PRICKLE2Q7Z3G6 844 aa10.16□□□□□ -0.78
HDAC9-221ENST00000471887 ANKMY2Q8IV38 441 aa10.16□□□□□ -0.78
HDAC9-221ENST00000471887 FHDC1Q9C0D6 1143 aaPredicted RBP10.16□□□□□ -0.78
HDAC9-221ENST00000471887 M0R2N6 131 aa10.15□□□□□ -0.78
HDAC9-221ENST00000471887 DKK1O94907 266 aa10.15□□□□□ -0.78
HDAC9-221ENST00000471887 SEC13P55735 322 aa10.15□□□□□ -0.78
HDAC9-221ENST00000471887 DPYDQ12882 1025 aa10.15□□□□□ -0.78
HDAC9-221ENST00000471887 A6NJY4 79 aa10.14□□□□□ -0.79
HDAC9-221ENST00000471887 PPP1R15AO75807 674 aaPredicted RBP10.14□□□□□ -0.79
HDAC9-221ENST00000471887 TMEM214Q6NUQ4 689 aaKnown RBP10.14□□□□□ -0.79
HDAC9-221ENST00000471887 SFI1A8K8P3 1242 aa10.13□□□□□ -0.79
HDAC9-221ENST00000471887 SPATA31C2B4DYI2 1134 aa10.13□□□□□ -0.79
HDAC9-221ENST00000471887 ATG7O95352 703 aa10.13□□□□□ -0.79
HDAC9-221ENST00000471887 MTFR1Q15390 333 aa10.13□□□□□ -0.79
HDAC9-221ENST00000471887 GNASQ5JWF2 1037 aa10.13□□□□□ -0.79
HDAC9-221ENST00000471887 NOVA2Q9UNW9 492 aaKnown RBP10.13□□□□□ -0.79
HDAC9-221ENST00000471887 POU4F2Q12837 409 aa10.12□□□□□ -0.79
HDAC9-221ENST00000471887 ELOAQ14241 798 aaKnown RBP10.12□□□□□ -0.79
HDAC9-221ENST00000471887 TAS1R3Q7RTX0 852 aa10.12□□□□□ -0.79
HDAC9-221ENST00000471887 PPARGC1BQ86YN6 1023 aaKnown RBP10.12□□□□□ -0.79
HDAC9-221ENST00000471887 NBPF15Q8N660 670 aa10.12□□□□□ -0.79
HDAC9-221ENST00000471887 ARXQ96QS3 562 aa10.12□□□□□ -0.79
HDAC9-221ENST00000471887 PTSQ03393 145 aa10.11□□□□□ -0.79
HDAC9-221ENST00000471887 WDR44Q5JSH3 913 aa10.11□□□□□ -0.79
HDAC9-221ENST00000471887 NBPF10Q6P3W6 841 aaKnown RBP10.11□□□□□ -0.79
HDAC9-221ENST00000471887 FAM200AQ8TCP9 573 aa10.11□□□□□ -0.79
HDAC9-221ENST00000471887 RHBDD1Q8TEB9 315 aa10.11□□□□□ -0.79
HDAC9-221ENST00000471887 CDK2AP1O14519 115 aa10.1□□□□□ -0.79
HDAC9-221ENST00000471887 RHOQP17081 205 aa10.1□□□□□ -0.79
HDAC9-221ENST00000471887 EPHA4P54764 986 aa10.1□□□□□ -0.79
HDAC9-221ENST00000471887 TNS4Q8IZW8 715 aa10.1□□□□□ -0.79
HDAC9-221ENST00000471887 TSEN2Q8NCE0 465 aaKnown RBP10.1□□□□□ -0.79
HDAC9-221ENST00000471887 SCHIP1Q9P0W5 487 aaPredicted RBP10.1□□□□□ -0.79
HDAC9-221ENST00000471887 NIFKQ9BYG3 293 aaKnown RBP10.09□□□□□ -0.79
HDAC9-221ENST00000471887 IQSEC3Q9UPP2 1182 aaPredicted RBP10.09□□□□□ -0.79
HDAC9-221ENST00000471887 ACIN1Q9UKV3 1341 aaKnown RBP10.08□□□□□ -0.8
HDAC9-221ENST00000471887 C4orf17Q53FE4 359 aa10.08□□□□□ -0.8
HDAC9-221ENST00000471887 HINFPQ9BQA5 517 aa10.08□□□□□ -0.8
HDAC9-221ENST00000471887 ZMIZ1Q9ULJ6 1067 aa10.08□□□□□ -0.8
HDAC9-221ENST00000471887 SLC35F4A4IF30 521 aa10.07□□□□□ -0.8
HDAC9-221ENST00000471887 FOXK2Q01167 660 aa10.07□□□□□ -0.8
HDAC9-221ENST00000471887 SLC9A9Q8IVB4 645 aa10.07□□□□□ -0.8
HDAC9-221ENST00000471887 TIMMDC1Q9NPL8 285 aa10.07□□□□□ -0.8
HDAC9-221ENST00000471887 NXF1Q9UBU9 619 aaKnown RBP10.07□□□□□ -0.8
HDAC9-221ENST00000471887 SENP3-EIF4A1A0A087X0R7 540 aa10.06□□□□□ -0.8
HDAC9-221ENST00000471887 PHKA2P46019 1235 aa10.06□□□□□ -0.8
HDAC9-221ENST00000471887 CCDC155Q8N6L0 562 aa10.06□□□□□ -0.8
HDAC9-221ENST00000471887 STK32AQ8WU08 396 aa10.06□□□□□ -0.8
HDAC9-221ENST00000471887 CABP1Q9NZU7 370 aa10.06□□□□□ -0.8
HDAC9-221ENST00000471887 USP3Q9Y6I4 520 aa10.06□□□□□ -0.8
HDAC9-221ENST00000471887 NPAS3Q8IXF0 933 aa10.05□□□□□ -0.8
HDAC9-221ENST00000471887 TSPAN10Q9H1Z9 355 aaPredicted RBP10.05□□□□□ -0.8
HDAC9-221ENST00000471887 DYRK1BQ9Y463 629 aa10.05□□□□□ -0.8
HDAC9-221ENST00000471887 PLA2G4AP47712 749 aa10.04□□□□□ -0.8
HDAC9-221ENST00000471887 SWI5Q1ZZU3 235 aa10.04□□□□□ -0.8
HDAC9-221ENST00000471887 CHMP3Q9Y3E7 222 aa10.04□□□□□ -0.8
HDAC9-221ENST00000471887 A0A1B0GTH6 734 aa10.03□□□□□ -0.8
HDAC9-221ENST00000471887 PPFIA3O75145 1194 aa10.03□□□□□ -0.8
HDAC9-221ENST00000471887 PSMA6P60900 246 aaKnown RBP10.03□□□□□ -0.8
HDAC9-221ENST00000471887 TBCELQ5QJ74 424 aa10.03□□□□□ -0.8
HDAC9-221ENST00000471887 TMEM164Q5U3C3 297 aa10.03□□□□□ -0.8
HDAC9-221ENST00000471887 ZNF295-AS1Q8N0V1 137 aa10.03□□□□□ -0.8
HDAC9-221ENST00000471887 TERTO14746 1132 aaKnown RBP10.02□□□□□ -0.81
HDAC9-221ENST00000471887 TEAD4Q15561 434 aa10.02□□□□□ -0.81
HDAC9-221ENST00000471887 GAS2L2Q8NHY3 880 aa10.02□□□□□ -0.81
HDAC9-221ENST00000471887 SCG3Q8WXD2 468 aaKnown RBP10.02□□□□□ -0.81
HDAC9-221ENST00000471887 GAS2L1Q99501 681 aaPredicted RBP10.02□□□□□ -0.81
HDAC9-221ENST00000471887 ATAD2Q6PL18 1390 aa10.01□□□□□ -0.81
HDAC9-221ENST00000471887 LGR5O75473 907 aa10.01□□□□□ -0.81
HDAC9-221ENST00000471887 CSB-PGBD3P0DP91 1061 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms