RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 LRRFIP2Q9Y608 721 aaKnown RBP23.62■■□□□ 1.37
VIM-203ENST00000469543 ANKARQ7Z5J8 1434 aa23.61■■□□□ 1.37
VIM-203ENST00000469543 MPRIPQ6WCQ1 1025 aa23.61■■□□□ 1.37
VIM-203ENST00000469543 HDGFL1Q5TGJ6 251 aa23.61■■□□□ 1.37
VIM-203ENST00000469543 HTATSF1O43719 755 aaKnown RBP23.6■■□□□ 1.37
VIM-203ENST00000469543 K7ELQ4 463 aaPredicted RBP23.6■■□□□ 1.37
VIM-203ENST00000469543 TRAK2O60296 914 aa23.6■■□□□ 1.37
VIM-203ENST00000469543 PDE1AP54750 535 aa23.6■■□□□ 1.37
VIM-203ENST00000469543 IP6K1Q92551 441 aa23.6■■□□□ 1.37
VIM-203ENST00000469543 USP44Q9H0E7 712 aa23.6■■□□□ 1.37
VIM-203ENST00000469543 HMMRO75330 724 aa23.59■■□□□ 1.37
VIM-203ENST00000469543 NCOA3Q9Y6Q9 1424 aa23.59■■□□□ 1.37
VIM-203ENST00000469543 IL1RAPL2Q9NP60 686 aa23.56■■□□□ 1.36
VIM-203ENST00000469543 CHPF2Q9P2E5 772 aa23.56■■□□□ 1.36
VIM-203ENST00000469543 AXIN2Q9Y2T1 843 aa23.55■■□□□ 1.36
VIM-203ENST00000469543 PRAMEF22A3QJZ6 481 aa23.54■■□□□ 1.36
VIM-203ENST00000469543 GCP02774 474 aa23.54■■□□□ 1.36
VIM-203ENST00000469543 NBPF7P0C2Y1 421 aaPredicted RBP23.54■■□□□ 1.36
VIM-203ENST00000469543 ATP8B2P98198 1209 aa23.54■■□□□ 1.36
VIM-203ENST00000469543 LRRCC1Q9C099 1032 aa23.54■■□□□ 1.36
VIM-203ENST00000469543 SSFA2P28290 1259 aa23.53■■□□□ 1.36
VIM-203ENST00000469543 EIF4A1P60842 406 aaKnown RBP23.53■■□□□ 1.36
VIM-203ENST00000469543 UNC5CLQ8IV45 518 aa23.53■■□□□ 1.36
VIM-203ENST00000469543 AK9Q5TCS8 1911 aa23.52■■□□□ 1.36
VIM-203ENST00000469543 GNAI3P08754 354 aa23.52■■□□□ 1.36
VIM-203ENST00000469543 PKP1Q13835 747 aa23.52■■□□□ 1.36
VIM-203ENST00000469543 ZNF530Q6P9A1 599 aaPredicted RBP23.52■■□□□ 1.36
VIM-203ENST00000469543 RILPL2Q969X0 211 aa23.52■■□□□ 1.36
VIM-203ENST00000469543 PI4KAP2A4QPH2 592 aa23.51■■□□□ 1.35
VIM-203ENST00000469543 RAB3GAP1Q15042 981 aa23.51■■□□□ 1.35
VIM-203ENST00000469543 PI4KAP1Q8N8J0 262 aa23.51■■□□□ 1.35
VIM-203ENST00000469543 UBTFL1P0CB47 393 aaPredicted RBP23.51■■□□□ 1.35
VIM-203ENST00000469543 DDX17Q92841 729 aaKnown RBP23.51■■□□□ 1.35
VIM-203ENST00000469543 LTN1O94822 1766 aa23.51■■□□□ 1.35
VIM-203ENST00000469543 MAP4K4O95819 1239 aaPredicted RBP23.5■■□□□ 1.35
VIM-203ENST00000469543 NUTM1Q86Y26 1132 aa23.5■■□□□ 1.35
VIM-203ENST00000469543 PANK2Q9BZ23 570 aa23.5■■□□□ 1.35
VIM-203ENST00000469543 BTBD11A6QL63 1104 aa23.5■■□□□ 1.35
VIM-203ENST00000469543 TRIM6-TRIM34B2RNG4 842 aa23.5■■□□□ 1.35
VIM-203ENST00000469543 MX1P20591 662 aa23.49■■□□□ 1.35
VIM-203ENST00000469543 RGPD2P0DJD1 1756 aa23.49■■□□□ 1.35
VIM-203ENST00000469543 CEMIPQ8WUJ3 1361 aa23.49■■□□□ 1.35
VIM-203ENST00000469543 XRCC6P12956 609 aaKnown RBP eCLIP23.48■■□□□ 1.35
VIM-203ENST00000469543 TEFQ10587 303 aa23.48■■□□□ 1.35
VIM-203ENST00000469543 PPP1R42Q7Z4L9 355 aa23.48■■□□□ 1.35
VIM-203ENST00000469543 CASC1Q6TDU7 716 aa23.48■■□□□ 1.35
VIM-203ENST00000469543 OSBPL3Q9H4L5 887 aa23.48■■□□□ 1.35
VIM-203ENST00000469543 SALL3Q9BXA9 1300 aa23.48■■□□□ 1.35
VIM-203ENST00000469543 CHD2O14647 1828 aaKnown RBP23.48■■□□□ 1.35
VIM-203ENST00000469543 ZC3H6P61129 1189 aaKnown RBP23.47■■□□□ 1.35
VIM-203ENST00000469543 ZGPATQ8N5A5 531 aaKnown RBP23.47■■□□□ 1.35
VIM-203ENST00000469543 IL25Q9H293 177 aa23.47■■□□□ 1.35
VIM-203ENST00000469543 ERC2O15083 957 aa23.47■■□□□ 1.35
VIM-203ENST00000469543 RABEP1Q15276 862 aa23.47■■□□□ 1.35
VIM-203ENST00000469543 PROSER3Q2NL68 480 aa23.47■■□□□ 1.35
VIM-203ENST00000469543 LRRC37A3O60309 1634 aa23.47■■□□□ 1.35
VIM-203ENST00000469543 SURF6O75683 361 aaKnown RBP23.46■■□□□ 1.35
VIM-203ENST00000469543 CHAMP1Q96JM3 812 aa23.46■■□□□ 1.35
VIM-203ENST00000469543 KCNH5Q8NCM2 988 aa23.46■■□□□ 1.35
VIM-203ENST00000469543 NFAT5O94916 1531 aa23.46■■□□□ 1.35
VIM-203ENST00000469543 IBTKQ9P2D0 1353 aaPredicted RBP23.46■■□□□ 1.35
VIM-203ENST00000469543 ARHGEF25Q86VW2 580 aa23.46■■□□□ 1.35
VIM-203ENST00000469543 SRCIN1Q9C0H9 1055 aa23.46■■□□□ 1.35
VIM-203ENST00000469543 ANKRD24Q8TF21 1146 aa23.45■■□□□ 1.34
VIM-203ENST00000469543 PALD1Q9ULE6 856 aa23.45■■□□□ 1.34
VIM-203ENST00000469543 FAM208AQ9UK61 1670 aaKnown RBP23.44■■□□□ 1.34
VIM-203ENST00000469543 SRGAP3O43295 1099 aa23.44■■□□□ 1.34
VIM-203ENST00000469543 NOL8Q76FK4 1167 aaKnown RBP23.44■■□□□ 1.34
VIM-203ENST00000469543 GOLGA6L3A6NEY3 463 aa23.43■■□□□ 1.34
VIM-203ENST00000469543 REC8O95072 547 aa23.43■■□□□ 1.34
VIM-203ENST00000469543 ADGRL3Q9HAR2 1447 aa23.43■■□□□ 1.34
VIM-203ENST00000469543 DDX11L8A8MPP1 907 aa23.43■■□□□ 1.34
VIM-203ENST00000469543 SOS1Q07889 1333 aaPredicted RBP23.42■■□□□ 1.34
VIM-203ENST00000469543 PXDNQ92626 1479 aa23.42■■□□□ 1.34
VIM-203ENST00000469543 AKAP4Q5JQC9 854 aa23.42■■□□□ 1.34
VIM-203ENST00000469543 BEND3Q5T5X7 828 aa23.42■■□□□ 1.34
VIM-203ENST00000469543 CIZ1Q9ULV3 898 aaPredicted RBP23.42■■□□□ 1.34
VIM-203ENST00000469543 PROSER2Q86WR7 435 aaPredicted RBP23.42■■□□□ 1.34
VIM-203ENST00000469543 DNAAF4Q8WXU2 420 aa23.42■■□□□ 1.34
VIM-203ENST00000469543 PLEKHO1Q53GL0 409 aaPredicted RBP23.41■■□□□ 1.34
VIM-203ENST00000469543 SSH3Q8TE77 659 aa23.41■■□□□ 1.34
VIM-203ENST00000469543 ANO2Q9NQ90 1003 aa23.41■■□□□ 1.34
VIM-203ENST00000469543 BABAM1Q9NWV8 329 aa23.41■■□□□ 1.34
VIM-203ENST00000469543 FSD2A1L4K1 749 aa23.41■■□□□ 1.34
VIM-203ENST00000469543 RNMTO43148 476 aaKnown RBP23.41■■□□□ 1.34
VIM-203ENST00000469543 NEK4P51957 841 aa23.41■■□□□ 1.34
VIM-203ENST00000469543 KRT28Q7Z3Y7 464 aa23.41■■□□□ 1.34
VIM-203ENST00000469543 ESYT1Q9BSJ8 1104 aa23.41■■□□□ 1.34
VIM-203ENST00000469543 CHMLP26374 656 aa23.4■■□□□ 1.34
VIM-203ENST00000469543 CWF19L2Q2TBE0 894 aaKnown RBP23.4■■□□□ 1.34
VIM-203ENST00000469543 FOXD4L5Q5VV16 416 aaPredicted RBP23.4■■□□□ 1.34
VIM-203ENST00000469543 FOXD4L4Q8WXT5 416 aaPredicted RBP23.4■■□□□ 1.34
VIM-203ENST00000469543 GBP4Q96PP9 640 aa23.4■■□□□ 1.34
VIM-203ENST00000469543 C1orf141Q5JVX7 400 aa23.39■■□□□ 1.34
VIM-203ENST00000469543 GAS2L3Q86XJ1 694 aa23.39■■□□□ 1.34
VIM-203ENST00000469543 SLC39A6Q13433 755 aa23.39■■□□□ 1.33
VIM-203ENST00000469543 CABLES1Q8TDN4 633 aa23.39■■□□□ 1.33
VIM-203ENST00000469543 AIMP1Q12904 312 aaKnown RBP23.38■■□□□ 1.33
VIM-203ENST00000469543 ADCY9O60503 1353 aa23.38■■□□□ 1.33
VIM-203ENST00000469543 RHPN1Q8TCX5 695 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms