RNA–Protein interactions for RNA: ENST00000469529.6

TRAF4-208, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-208ENST00000469529 ALDH1L2Q3SY69 923 aa16.48■□□□□ 0.23
TRAF4-208ENST00000469529 SLC52A2Q9HAB3 445 aa16.48■□□□□ 0.23
TRAF4-208ENST00000469529 USP35Q9P2H5 1018 aa16.48■□□□□ 0.23
TRAF4-208ENST00000469529 ADAMTS7Q9UKP4 1686 aa16.48■□□□□ 0.23
TRAF4-208ENST00000469529 PKD1L3Q7Z443 1732 aa16.48■□□□□ 0.23
TRAF4-208ENST00000469529 RARSP54136 660 aaKnown RBP16.47■□□□□ 0.23
TRAF4-208ENST00000469529 CHMP4AQ9BY43 222 aa16.47■□□□□ 0.23
TRAF4-208ENST00000469529 LAS1LQ9Y4W2 734 aaKnown RBP16.47■□□□□ 0.23
TRAF4-208ENST00000469529 DLG5Q8TDM6 1919 aa16.47■□□□□ 0.23
TRAF4-208ENST00000469529 ERICH6BQ5W0A0 696 aa16.46■□□□□ 0.23
TRAF4-208ENST00000469529 TSPYL4Q9UJ04 414 aa16.46■□□□□ 0.23
TRAF4-208ENST00000469529 THSD7AQ9UPZ6 1657 aa16.46■□□□□ 0.23
TRAF4-208ENST00000469529 KDM6AO15550 1401 aaPredicted RBP16.45■□□□□ 0.22
TRAF4-208ENST00000469529 PARP4Q9UKK3 1724 aaKnown RBP16.45■□□□□ 0.22
TRAF4-208ENST00000469529 HOXB7P09629 217 aa16.45■□□□□ 0.22
TRAF4-208ENST00000469529 DDB1Q16531 1140 aa16.45■□□□□ 0.22
TRAF4-208ENST00000469529 C8orf58Q8NAV2 365 aa16.45■□□□□ 0.22
TRAF4-208ENST00000469529 LRRC37A3O60309 1634 aa16.45■□□□□ 0.22
TRAF4-208ENST00000469529 HEG1Q9ULI3 1381 aa16.44■□□□□ 0.22
TRAF4-208ENST00000469529 BTBD11A6QL63 1104 aa16.44■□□□□ 0.22
TRAF4-208ENST00000469529 SF3B2Q13435 895 aaKnown RBP16.44■□□□□ 0.22
TRAF4-208ENST00000469529 EIF4A1P60842 406 aaKnown RBP16.43■□□□□ 0.22
TRAF4-208ENST00000469529 TWISTNBQ3B726 338 aaPredicted RBP16.43■□□□□ 0.22
TRAF4-208ENST00000469529 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.43■□□□□ 0.22
TRAF4-208ENST00000469529 NFATC2IPQ8NCF5 419 aa16.43■□□□□ 0.22
TRAF4-208ENST00000469529 DDX54Q8TDD1 881 aaKnown RBP16.43■□□□□ 0.22
TRAF4-208ENST00000469529 EP400Q96L91 3159 aa16.42■□□□□ 0.22
TRAF4-208ENST00000469529 MRC1P22897 1456 aa16.42■□□□□ 0.22
TRAF4-208ENST00000469529 RRP1P56182 461 aaKnown RBP16.42■□□□□ 0.22
TRAF4-208ENST00000469529 TSPYL6Q8N831 410 aa16.42■□□□□ 0.22
TRAF4-208ENST00000469529 MIS18AQ9NYP9 233 aa16.42■□□□□ 0.22
TRAF4-208ENST00000469529 TNS2Q63HR2 1409 aa16.42■□□□□ 0.22
TRAF4-208ENST00000469529 CABP4P57796 275 aa16.41■□□□□ 0.22
TRAF4-208ENST00000469529 FAM182BQ5T319 152 aa16.41■□□□□ 0.22
TRAF4-208ENST00000469529 ZNF790Q6PG37 636 aa16.4■□□□□ 0.22
TRAF4-208ENST00000469529 DEFB132Q7Z7B7 95 aa16.4■□□□□ 0.22
TRAF4-208ENST00000469529 SSH1Q8WYL5 1049 aa16.4■□□□□ 0.22
TRAF4-208ENST00000469529 ARHGAP45Q92619 1136 aa16.4■□□□□ 0.22
TRAF4-208ENST00000469529 BCAR3O75815 825 aa16.39■□□□□ 0.21
TRAF4-208ENST00000469529 PDE3AQ14432 1141 aa16.39■□□□□ 0.21
TRAF4-208ENST00000469529 BCL9O00512 1426 aa16.38■□□□□ 0.21
TRAF4-208ENST00000469529 NEFLP07196 543 aa16.38■□□□□ 0.21
TRAF4-208ENST00000469529 MARCH10Q8NA82 808 aaPredicted RBP16.38■□□□□ 0.21
TRAF4-208ENST00000469529 GIGYF1O75420 1035 aaPredicted RBP16.37■□□□□ 0.21
TRAF4-208ENST00000469529 MS4A1P11836 297 aa16.37■□□□□ 0.21
TRAF4-208ENST00000469529 MRPL50Q8N5N7 158 aaKnown RBP16.37■□□□□ 0.21
TRAF4-208ENST00000469529 IPO8O15397 1037 aaKnown RBP16.36■□□□□ 0.21
TRAF4-208ENST00000469529 BAG6P46379 1132 aa16.36■□□□□ 0.21
TRAF4-208ENST00000469529 FAM196AQ6ZSG2 479 aa16.36■□□□□ 0.21
TRAF4-208ENST00000469529 ELL2O00472 640 aaPredicted RBP16.35■□□□□ 0.21
TRAF4-208ENST00000469529 KCNQ3O43525 872 aa16.35■□□□□ 0.21
TRAF4-208ENST00000469529 CCDC30Q5VVM6 783 aa16.35■□□□□ 0.21
TRAF4-208ENST00000469529 SMC4Q9NTJ3 1288 aa16.35■□□□□ 0.21
TRAF4-208ENST00000469529 GTF3C3Q9Y5Q9 886 aa16.35■□□□□ 0.21
TRAF4-208ENST00000469529 SCN11AQ9UI33 1791 aa16.35■□□□□ 0.21
TRAF4-208ENST00000469529 KRT24Q2M2I5 525 aa16.34■□□□□ 0.21
TRAF4-208ENST00000469529 VSIG10Q8N0Z9 540 aa16.34■□□□□ 0.21
TRAF4-208ENST00000469529 PIGBQ92521 554 aa16.34■□□□□ 0.21
TRAF4-208ENST00000469529 FMNL2Q96PY5 1086 aa16.34■□□□□ 0.21
TRAF4-208ENST00000469529 TMOD3Q9NYL9 352 aa16.34■□□□□ 0.21
TRAF4-208ENST00000469529 KIF16BQ96L93 1317 aa16.34■□□□□ 0.21
TRAF4-208ENST00000469529 SHANK3Q9BYB0 1731 aa16.33■□□□□ 0.21
TRAF4-208ENST00000469529 ZKSCAN2Q63HK3 967 aa16.33■□□□□ 0.2
TRAF4-208ENST00000469529 TTC5Q8N0Z6 440 aa16.33■□□□□ 0.2
TRAF4-208ENST00000469529 SIPA1L3O60292 1781 aaPredicted RBP16.32■□□□□ 0.2
TRAF4-208ENST00000469529 TRIM37O94972 964 aa16.32■□□□□ 0.2
TRAF4-208ENST00000469529 SNRPA1P09661 255 aaKnown RBP16.32■□□□□ 0.2
TRAF4-208ENST00000469529 ZNF496Q96IT1 587 aaPredicted RBP16.32■□□□□ 0.2
TRAF4-208ENST00000469529 EN1Q05925 392 aaPredicted RBP16.31■□□□□ 0.2
TRAF4-208ENST00000469529 SLC39A6Q13433 755 aa16.31■□□□□ 0.2
TRAF4-208ENST00000469529 AAMPQ13685 434 aa16.31■□□□□ 0.2
TRAF4-208ENST00000469529 FKBP8Q14318 412 aa16.31■□□□□ 0.2
TRAF4-208ENST00000469529 ATF7IPQ6VMQ6 1270 aa16.31■□□□□ 0.2
TRAF4-208ENST00000469529 TEX13AQ9BXU3 409 aaPredicted RBP16.31■□□□□ 0.2
TRAF4-208ENST00000469529 WNK3Q9BYP7 1800 aa16.31■□□□□ 0.2
TRAF4-208ENST00000469529 PTPRCP08575 1304 aa16.3■□□□□ 0.2
TRAF4-208ENST00000469529 PLIN1O60240 522 aa16.3■□□□□ 0.2
TRAF4-208ENST00000469529 SLC4A2P04920 1241 aa16.3■□□□□ 0.2
TRAF4-208ENST00000469529 PRIM1P49642 420 aaKnown RBP16.3■□□□□ 0.2
TRAF4-208ENST00000469529 STK31Q9BXU1 1019 aa16.3■□□□□ 0.2
TRAF4-208ENST00000469529 ATG3Q9NT62 314 aa16.3■□□□□ 0.2
TRAF4-208ENST00000469529 NOB1Q9ULX3 412 aaKnown RBP16.3■□□□□ 0.2
TRAF4-208ENST00000469529 KDM3BQ7LBC6 1761 aa16.3■□□□□ 0.2
TRAF4-208ENST00000469529 TNS1Q9HBL0 1735 aaKnown RBP16.3■□□□□ 0.2
TRAF4-208ENST00000469529 HDGFL1Q5TGJ6 251 aa16.29■□□□□ 0.2
TRAF4-208ENST00000469529 DBF4Q9UBU7 674 aaPredicted RBP16.29■□□□□ 0.2
TRAF4-208ENST00000469529 ERBB4Q15303 1308 aa16.28■□□□□ 0.2
TRAF4-208ENST00000469529 TRIM27P14373 513 aa16.28■□□□□ 0.2
TRAF4-208ENST00000469529 BCL2L13Q9BXK5 485 aa16.28■□□□□ 0.2
TRAF4-208ENST00000469529 API5Q9BZZ5 524 aaKnown RBP16.28■□□□□ 0.2
TRAF4-208ENST00000469529 APBA3O96018 575 aa16.27■□□□□ 0.2
TRAF4-208ENST00000469529 DZIP1LQ8IYY4 767 aaKnown RBP16.27■□□□□ 0.2
TRAF4-208ENST00000469529 SMARCC1Q92922 1105 aaPredicted RBP16.27■□□□□ 0.2
TRAF4-208ENST00000469529 FRAT1Q92837 279 aaPredicted RBP16.26■□□□□ 0.19
TRAF4-208ENST00000469529 DDX21Q9NR30 783 aaKnown RBP eCLIP16.26■□□□□ 0.19
TRAF4-208ENST00000469529 ASAP1Q9ULH1 1129 aa16.26■□□□□ 0.19
TRAF4-208ENST00000469529 PDIA6Q15084 440 aa16.25■□□□□ 0.19
TRAF4-208ENST00000469529 EZH2Q15910 746 aaKnown RBP16.25■□□□□ 0.19
TRAF4-208ENST00000469529 C20orf194Q5TEA3 1177 aa16.25■□□□□ 0.19
TRAF4-208ENST00000469529 HYPKQ9NX55 129 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms