RNA–Protein interactions for RNA: ENST00000466260.1

RTFDC1-205, Transcript of Protein RTF2 homolog, humanhuman

TSL 3

Gene RTFDC1, Length 616 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-205ENST00000466260 DLG5Q8TDM6 1919 aa13.05□□□□□ -0.32
RTFDC1-205ENST00000466260 QSER1Q2KHR3 1735 aa13.05□□□□□ -0.32
RTFDC1-205ENST00000466260 HSP90AB1P08238 724 aaKnown RBP13.04□□□□□ -0.32
RTFDC1-205ENST00000466260 U2AF1L5P0DN76 240 aaPredicted RBP13.04□□□□□ -0.32
RTFDC1-205ENST00000466260 U2AF1Q01081 240 aaKnown RBP eCLIP13.04□□□□□ -0.32
RTFDC1-205ENST00000466260 SLC15A2Q16348 729 aa13.04□□□□□ -0.32
RTFDC1-205ENST00000466260 ZNF827Q17R98 1081 aa13.04□□□□□ -0.32
RTFDC1-205ENST00000466260 PDGFDQ9GZP0 370 aaPredicted RBP13.04□□□□□ -0.32
RTFDC1-205ENST00000466260 NUDCQ9Y266 331 aa13.04□□□□□ -0.32
RTFDC1-205ENST00000466260 PLEKHG2Q9H7P9 1386 aa13.04□□□□□ -0.32
RTFDC1-205ENST00000466260 C4BP0C0L5 1744 aa13.03□□□□□ -0.32
RTFDC1-205ENST00000466260 PRKAR2BP31323 418 aa13.03□□□□□ -0.32
RTFDC1-205ENST00000466260 CABP4P57796 275 aa13.03□□□□□ -0.32
RTFDC1-205ENST00000466260 MTHFSDQ2M296 383 aaKnown RBP13.03□□□□□ -0.32
RTFDC1-205ENST00000466260 SLC27A3Q5K4L6 730 aa13.03□□□□□ -0.32
RTFDC1-205ENST00000466260 AKAP4Q5JQC9 854 aa13.02□□□□□ -0.33
RTFDC1-205ENST00000466260 DCAF5Q96JK2 942 aa13.02□□□□□ -0.33
RTFDC1-205ENST00000466260 ASAP1Q9ULH1 1129 aa13.02□□□□□ -0.33
RTFDC1-205ENST00000466260 ZBTB7AO95365 584 aa13.01□□□□□ -0.33
RTFDC1-205ENST00000466260 FKBP8Q14318 412 aa13.01□□□□□ -0.33
RTFDC1-205ENST00000466260 SMARCC1Q92922 1105 aaPredicted RBP13.01□□□□□ -0.33
RTFDC1-205ENST00000466260 UBR3Q6ZT12 1888 aa13.01□□□□□ -0.33
RTFDC1-205ENST00000466260 SIPA1L3O60292 1781 aaPredicted RBP13□□□□□ -0.33
RTFDC1-205ENST00000466260 COL5A3P25940 1745 aaPredicted RBP13□□□□□ -0.33
RTFDC1-205ENST00000466260 ADAMTS7Q9UKP4 1686 aa13□□□□□ -0.33
RTFDC1-205ENST00000466260 ZNF316A6NFI3 1004 aaPredicted RBP13□□□□□ -0.33
RTFDC1-205ENST00000466260 RALBP1Q15311 655 aa13□□□□□ -0.33
RTFDC1-205ENST00000466260 RBM42Q9BTD8 480 aaKnown RBP13□□□□□ -0.33
RTFDC1-205ENST00000466260 RSPH6AQ9H0K4 717 aa13□□□□□ -0.33
RTFDC1-205ENST00000466260 LGR6Q9HBX8 967 aa13□□□□□ -0.33
RTFDC1-205ENST00000466260 TJP1Q07157 1748 aa12.99□□□□□ -0.33
RTFDC1-205ENST00000466260 MYBBP1AQ9BQG0 1328 aaKnown RBP12.99□□□□□ -0.33
RTFDC1-205ENST00000466260 ERVV-2B6SEH9 535 aa12.99□□□□□ -0.33
RTFDC1-205ENST00000466260 MKRN4PQ13434 485 aaPredicted RBP12.99□□□□□ -0.33
RTFDC1-205ENST00000466260 NFATC2IPQ8NCF5 419 aa12.99□□□□□ -0.33
RTFDC1-205ENST00000466260 ATG3Q9NT62 314 aa12.99□□□□□ -0.33
RTFDC1-205ENST00000466260 TFCP2L1Q9NZI6 479 aa12.99□□□□□ -0.33
RTFDC1-205ENST00000466260 MAP3K5Q99683 1374 aa12.98□□□□□ -0.33
RTFDC1-205ENST00000466260 LOC102724428A0A0B4J2F2 783 aa12.98□□□□□ -0.33
RTFDC1-205ENST00000466260 RNMTO43148 476 aaKnown RBP12.98□□□□□ -0.33
RTFDC1-205ENST00000466260 ATP6V1AP38606 617 aa12.98□□□□□ -0.33
RTFDC1-205ENST00000466260 SIK1P57059 783 aa12.98□□□□□ -0.33
RTFDC1-205ENST00000466260 GAS2L2Q8NHY3 880 aa12.98□□□□□ -0.33
RTFDC1-205ENST00000466260 AKT1S1Q96B36 256 aa12.98□□□□□ -0.33
RTFDC1-205ENST00000466260 PHACTR3Q96KR7 559 aa12.98□□□□□ -0.33
RTFDC1-205ENST00000466260 MRC1P22897 1456 aa12.97□□□□□ -0.33
RTFDC1-205ENST00000466260 PNPLA7Q6ZV29 1317 aa12.97□□□□□ -0.33
RTFDC1-205ENST00000466260 PTCD1O75127 700 aaKnown RBP12.97□□□□□ -0.33
RTFDC1-205ENST00000466260 PHF14O94880 888 aa12.97□□□□□ -0.33
RTFDC1-205ENST00000466260 AK7Q96M32 723 aa12.97□□□□□ -0.33
RTFDC1-205ENST00000466260 SPON1Q9HCB6 807 aa12.97□□□□□ -0.33
RTFDC1-205ENST00000466260 PPP1R1BQ9UD71 204 aaPredicted RBP12.97□□□□□ -0.33
RTFDC1-205ENST00000466260 GNAT3A8MTJ3 354 aa12.96□□□□□ -0.33
RTFDC1-205ENST00000466260 NEFMP07197 916 aa12.96□□□□□ -0.33
RTFDC1-205ENST00000466260 SMIM5Q71RC9 77 aa12.96□□□□□ -0.33
RTFDC1-205ENST00000466260 LINC00116Q8NCU8 138 aa12.96□□□□□ -0.33
RTFDC1-205ENST00000466260 SLC52A2Q9HAB3 445 aa12.96□□□□□ -0.33
RTFDC1-205ENST00000466260 ZBTB12Q9Y330 459 aaPredicted RBP12.96□□□□□ -0.33
RTFDC1-205ENST00000466260 UBR2Q8IWV8 1755 aa12.96□□□□□ -0.34
RTFDC1-205ENST00000466260 ZNF831Q5JPB2 1677 aa12.96□□□□□ -0.34
RTFDC1-205ENST00000466260 MYH14Q7Z406 1995 aaKnown RBP12.95□□□□□ -0.34
RTFDC1-205ENST00000466260 SLC39A6Q13433 755 aa12.95□□□□□ -0.34
RTFDC1-205ENST00000466260 ITPK1Q13572 414 aa12.95□□□□□ -0.34
RTFDC1-205ENST00000466260 PRKRIP1Q9H875 184 aaPredicted RBP12.95□□□□□ -0.34
RTFDC1-205ENST00000466260 C4AP0C0L4 1744 aa12.94□□□□□ -0.34
RTFDC1-205ENST00000466260 FCHSD2O94868 740 aa12.94□□□□□ -0.34
RTFDC1-205ENST00000466260 TEFQ10587 303 aa12.94□□□□□ -0.34
RTFDC1-205ENST00000466260 MAPK8IP3Q9UPT6 1336 aa12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 GNPATO15228 680 aa12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 DCTN1Q14203 1278 aa12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 MSL1Q68DK7 614 aa12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 KLHL34Q8N239 644 aa12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 RTF1Q92541 710 aaKnown RBP12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 SLC4A9Q96Q91 983 aa12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 MTFR1LQ9H019 292 aa12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 KCPQ6ZWJ8 1503 aa12.93□□□□□ -0.34
RTFDC1-205ENST00000466260 WDR43Q15061 677 aaKnown RBP eCLIP12.92□□□□□ -0.34
RTFDC1-205ENST00000466260 MCM10Q7L590 875 aa12.92□□□□□ -0.34
RTFDC1-205ENST00000466260 AMIGO3Q86WK7 504 aa12.92□□□□□ -0.34
RTFDC1-205ENST00000466260 COL23A1Q86Y22 540 aaPredicted RBP12.92□□□□□ -0.34
RTFDC1-205ENST00000466260 IL17REQ8NFR9 667 aa12.92□□□□□ -0.34
RTFDC1-205ENST00000466260 CICQ96RK0 1608 aaPredicted RBP12.91□□□□□ -0.34
RTFDC1-205ENST00000466260 COL24A1Q17RW2 1714 aa12.91□□□□□ -0.34
RTFDC1-205ENST00000466260 CCDC146Q8IYE0 955 aa12.91□□□□□ -0.34
RTFDC1-205ENST00000466260 TTC5Q8N0Z6 440 aa12.91□□□□□ -0.34
RTFDC1-205ENST00000466260 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.9□□□□□ -0.34
RTFDC1-205ENST00000466260 PTGER2P43116 358 aa12.89□□□□□ -0.35
RTFDC1-205ENST00000466260 DNAJC10Q8IXB1 793 aa12.89□□□□□ -0.35
RTFDC1-205ENST00000466260 PLEKHF1Q96S99 279 aa12.89□□□□□ -0.35
RTFDC1-205ENST00000466260 KDM3BQ7LBC6 1761 aa12.89□□□□□ -0.35
RTFDC1-205ENST00000466260 BTBD11A6QL63 1104 aa12.88□□□□□ -0.35
RTFDC1-205ENST00000466260 PNNQ9H307 717 aaKnown RBP12.88□□□□□ -0.35
RTFDC1-205ENST00000466260 RRP7AQ9Y3A4 280 aaKnown RBP12.88□□□□□ -0.35
RTFDC1-205ENST00000466260 CEMIPQ8WUJ3 1361 aa12.88□□□□□ -0.35
RTFDC1-205ENST00000466260 ANP32CO43423 234 aa12.87□□□□□ -0.35
RTFDC1-205ENST00000466260 KCNQ3O43525 872 aa12.87□□□□□ -0.35
RTFDC1-205ENST00000466260 HMGB2P26583 209 aaKnown RBP12.87□□□□□ -0.35
RTFDC1-205ENST00000466260 POLD1P28340 1107 aa12.87□□□□□ -0.35
RTFDC1-205ENST00000466260 CRKLP46109 303 aaKnown RBP12.87□□□□□ -0.35
RTFDC1-205ENST00000466260 NEUROD2Q15784 382 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms