RNA–Protein interactions for RNA: ENST00000462276.1

RTF1-202, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-202ENST00000462276 MBIPQ9NS73 344 aa13.82□□□□□ -0.2
RTF1-202ENST00000462276 TMOD3Q9NYL9 352 aa13.82□□□□□ -0.2
RTF1-202ENST00000462276 FANCIQ9NVI1 1328 aa13.82□□□□□ -0.2
RTF1-202ENST00000462276 KDM6AO15550 1401 aaPredicted RBP13.81□□□□□ -0.2
RTF1-202ENST00000462276 PKD1L3Q7Z443 1732 aa13.81□□□□□ -0.2
RTF1-202ENST00000462276 GLI3P10071 1580 aa13.8□□□□□ -0.2
RTF1-202ENST00000462276 HOXB7P09629 217 aa13.8□□□□□ -0.2
RTF1-202ENST00000462276 FAM196AQ6ZSG2 479 aa13.8□□□□□ -0.2
RTF1-202ENST00000462276 KRT27Q7Z3Y8 459 aa13.8□□□□□ -0.2
RTF1-202ENST00000462276 ZNF790Q6PG37 636 aa13.79□□□□□ -0.2
RTF1-202ENST00000462276 UPF1Q92900 1129 aaKnown RBP eCLIP13.79□□□□□ -0.2
RTF1-202ENST00000462276 TSR2Q969E8 191 aaKnown RBP13.79□□□□□ -0.2
RTF1-202ENST00000462276 SRCAPQ6ZRS2 3230 aa13.79□□□□□ -0.2
RTF1-202ENST00000462276 PRIM1P49642 420 aaKnown RBP13.78□□□□□ -0.2
RTF1-202ENST00000462276 TTC5Q8N0Z6 440 aa13.78□□□□□ -0.2
RTF1-202ENST00000462276 PIAS4Q8N2W9 510 aaPredicted RBP13.78□□□□□ -0.2
RTF1-202ENST00000462276 MRC1P22897 1456 aa13.78□□□□□ -0.2
RTF1-202ENST00000462276 HMGB2P26583 209 aaKnown RBP13.77□□□□□ -0.21
RTF1-202ENST00000462276 EIF4A1P60842 406 aaKnown RBP13.77□□□□□ -0.21
RTF1-202ENST00000462276 EXOSC9Q06265 439 aaKnown RBP13.77□□□□□ -0.21
RTF1-202ENST00000462276 PIGBQ92521 554 aa13.77□□□□□ -0.21
RTF1-202ENST00000462276 SMARCC1Q92922 1105 aaPredicted RBP13.77□□□□□ -0.21
RTF1-202ENST00000462276 MIS18AQ9NYP9 233 aa13.77□□□□□ -0.21
RTF1-202ENST00000462276 THSD7AQ9UPZ6 1657 aa13.77□□□□□ -0.21
RTF1-202ENST00000462276 ADAMTS7Q9UKP4 1686 aa13.76□□□□□ -0.21
RTF1-202ENST00000462276 FMNL2Q96PY5 1086 aa13.76□□□□□ -0.21
RTF1-202ENST00000462276 RCAN3Q9UKA8 241 aa13.76□□□□□ -0.21
RTF1-202ENST00000462276 VAMP4O75379 141 aa13.75□□□□□ -0.21
RTF1-202ENST00000462276 TWISTNBQ3B726 338 aaPredicted RBP13.75□□□□□ -0.21
RTF1-202ENST00000462276 VSIG10Q8N0Z9 540 aa13.75□□□□□ -0.21
RTF1-202ENST00000462276 SYTL4Q96C24 671 aaPredicted RBP13.75□□□□□ -0.21
RTF1-202ENST00000462276 TEX13AQ9BXU3 409 aaPredicted RBP13.75□□□□□ -0.21
RTF1-202ENST00000462276 SNRPA1P09661 255 aaKnown RBP13.74□□□□□ -0.21
RTF1-202ENST00000462276 ALDH1L2Q3SY69 923 aa13.74□□□□□ -0.21
RTF1-202ENST00000462276 C8orf58Q8NAV2 365 aa13.74□□□□□ -0.21
RTF1-202ENST00000462276 BCL11BQ9C0K0 894 aaPredicted RBP13.74□□□□□ -0.21
RTF1-202ENST00000462276 LRRC37A3O60309 1634 aa13.74□□□□□ -0.21
RTF1-202ENST00000462276 HEG1Q9ULI3 1381 aa13.73□□□□□ -0.21
RTF1-202ENST00000462276 GIGYF1O75420 1035 aaPredicted RBP13.73□□□□□ -0.21
RTF1-202ENST00000462276 BRPF1P55201 1214 aaPredicted RBP13.73□□□□□ -0.21
RTF1-202ENST00000462276 ATG3Q9NT62 314 aa13.73□□□□□ -0.21
RTF1-202ENST00000462276 RARSP54136 660 aaKnown RBP13.72□□□□□ -0.21
RTF1-202ENST00000462276 SLC39A6Q13433 755 aa13.72□□□□□ -0.21
RTF1-202ENST00000462276 CCDC30Q5VVM6 783 aa13.72□□□□□ -0.21
RTF1-202ENST00000462276 ZNF496Q96IT1 587 aaPredicted RBP13.72□□□□□ -0.21
RTF1-202ENST00000462276 DLG5Q8TDM6 1919 aa13.71□□□□□ -0.21
RTF1-202ENST00000462276 KCNQ3O43525 872 aa13.71□□□□□ -0.21
RTF1-202ENST00000462276 TSPYL6Q8N831 410 aa13.71□□□□□ -0.21
RTF1-202ENST00000462276 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.71□□□□□ -0.21
RTF1-202ENST00000462276 ACSBG1Q96GR2 724 aa13.71□□□□□ -0.21
RTF1-202ENST00000462276 ASAP1Q9ULH1 1129 aa13.71□□□□□ -0.21
RTF1-202ENST00000462276 WNK3Q9BYP7 1800 aa13.71□□□□□ -0.22
RTF1-202ENST00000462276 STK31Q9BXU1 1019 aa13.7□□□□□ -0.22
RTF1-202ENST00000462276 ERBB4Q15303 1308 aa13.69□□□□□ -0.22
RTF1-202ENST00000462276 ELL2O00472 640 aaPredicted RBP13.69□□□□□ -0.22
RTF1-202ENST00000462276 IPO8O15397 1037 aaKnown RBP13.69□□□□□ -0.22
RTF1-202ENST00000462276 KCNQ2O43526 872 aa13.69□□□□□ -0.22
RTF1-202ENST00000462276 STARD3NLO95772 234 aa13.69□□□□□ -0.22
RTF1-202ENST00000462276 RGS12O14924 1447 aa13.69□□□□□ -0.22
RTF1-202ENST00000462276 SCN11AQ9UI33 1791 aa13.68□□□□□ -0.22
RTF1-202ENST00000462276 SHANK3Q9BYB0 1731 aa13.68□□□□□ -0.22
RTF1-202ENST00000462276 PTCD1O75127 700 aaKnown RBP13.68□□□□□ -0.22
RTF1-202ENST00000462276 HDGFL1Q5TGJ6 251 aa13.68□□□□□ -0.22
RTF1-202ENST00000462276 SMC4Q9NTJ3 1288 aa13.68□□□□□ -0.22
RTF1-202ENST00000462276 RNF123Q5XPI4 1314 aa13.67□□□□□ -0.22
RTF1-202ENST00000462276 KIF16BQ96L93 1317 aa13.67□□□□□ -0.22
RTF1-202ENST00000462276 LOC102724428A0A0B4J2F2 783 aa13.67□□□□□ -0.22
RTF1-202ENST00000462276 MS4A1P11836 297 aa13.67□□□□□ -0.22
RTF1-202ENST00000462276 SIK1P57059 783 aa13.67□□□□□ -0.22
RTF1-202ENST00000462276 KRT24Q2M2I5 525 aa13.67□□□□□ -0.22
RTF1-202ENST00000462276 SSH1Q8WYL5 1049 aa13.67□□□□□ -0.22
RTF1-202ENST00000462276 ARHGAP45Q92619 1136 aa13.67□□□□□ -0.22
RTF1-202ENST00000462276 DBF4Q9UBU7 674 aaPredicted RBP13.67□□□□□ -0.22
RTF1-202ENST00000462276 FAM182BQ5T319 152 aa13.66□□□□□ -0.22
RTF1-202ENST00000462276 POTEDQ86YR6 584 aa13.66□□□□□ -0.22
RTF1-202ENST00000462276 RBM42Q9BTD8 480 aaKnown RBP13.66□□□□□ -0.22
RTF1-202ENST00000462276 PALLDQ8WX93 1383 aa13.66□□□□□ -0.22
RTF1-202ENST00000462276 PLSCR1O15162 318 aa13.65□□□□□ -0.22
RTF1-202ENST00000462276 TRIM37O94972 964 aa13.65□□□□□ -0.22
RTF1-202ENST00000462276 SLC4A2P04920 1241 aa13.65□□□□□ -0.22
RTF1-202ENST00000462276 EIF2S2P20042 333 aaKnown RBP13.65□□□□□ -0.22
RTF1-202ENST00000462276 SLC27A3Q5K4L6 730 aa13.65□□□□□ -0.22
RTF1-202ENST00000462276 DDX21Q9NR30 783 aaKnown RBP eCLIP13.65□□□□□ -0.22
RTF1-202ENST00000462276 HYPKQ9NX55 129 aa13.65□□□□□ -0.22
RTF1-202ENST00000462276 SUPT16HQ9Y5B9 1047 aaKnown RBP13.65□□□□□ -0.22
RTF1-202ENST00000462276 CCDC125Q86Z20 511 aa13.64□□□□□ -0.23
RTF1-202ENST00000462276 MRPL50Q8N5N7 158 aaKnown RBP13.64□□□□□ -0.23
RTF1-202ENST00000462276 USP16Q9Y5T5 823 aa13.64□□□□□ -0.23
RTF1-202ENST00000462276 PTPRCP08575 1304 aa13.64□□□□□ -0.23
RTF1-202ENST00000462276 BCAR3O75815 825 aa13.63□□□□□ -0.23
RTF1-202ENST00000462276 ADRA2BP18089 450 aa13.63□□□□□ -0.23
RTF1-202ENST00000462276 ATP6V1AP38606 617 aa13.63□□□□□ -0.23
RTF1-202ENST00000462276 PDE3AQ14432 1141 aa13.63□□□□□ -0.23
RTF1-202ENST00000462276 ZKSCAN2Q63HK3 967 aa13.63□□□□□ -0.23
RTF1-202ENST00000462276 API5Q9BZZ5 524 aaKnown RBP13.63□□□□□ -0.23
RTF1-202ENST00000462276 CYP19A1P11511 503 aaPredicted RBP13.62□□□□□ -0.23
RTF1-202ENST00000462276 RRP1P56182 461 aaKnown RBP13.62□□□□□ -0.23
RTF1-202ENST00000462276 RC3H1Q5TC82 1133 aaKnown RBP13.62□□□□□ -0.23
RTF1-202ENST00000462276 DNAJC10Q8IXB1 793 aa13.62□□□□□ -0.23
RTF1-202ENST00000462276 KCPQ6ZWJ8 1503 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms