RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 CEP126Q9P2H0 1117 aa7□□□□□ -1.29
CSMD3-205ENST00000462254 CDV3Q9UKY7 258 aaKnown RBP7□□□□□ -1.29
CSMD3-205ENST00000462254 MTUS2Q5JR59 1369 aa6.99□□□□□ -1.29
CSMD3-205ENST00000462254 PREX2Q70Z35 1606 aa6.99□□□□□ -1.29
CSMD3-205ENST00000462254 ST8SIA5O15466 376 aa6.99□□□□□ -1.29
CSMD3-205ENST00000462254 PPP1R15AO75807 674 aaPredicted RBP6.99□□□□□ -1.29
CSMD3-205ENST00000462254 AVPP01185 164 aa6.99□□□□□ -1.29
CSMD3-205ENST00000462254 PDE4CQ08493 712 aa6.99□□□□□ -1.29
CSMD3-205ENST00000462254 NBPF20Q3BBV1 942 aa6.99□□□□□ -1.29
CSMD3-205ENST00000462254 WWC1Q8IX03 1113 aa6.99□□□□□ -1.29
CSMD3-205ENST00000462254 ALG2Q9H553 416 aa6.99□□□□□ -1.29
CSMD3-205ENST00000462254 TROQ12816 1431 aaPredicted RBP6.99□□□□□ -1.29
CSMD3-205ENST00000462254 NCOA2Q15596 1464 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 E9PSI1 815 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 HMGB1P09429 215 aaKnown RBP6.98□□□□□ -1.29
CSMD3-205ENST00000462254 SEMA3FQ13275 785 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 TSGA10IPQ3SY00 556 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 HDGFL1Q5TGJ6 251 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 CCDC116Q8IYX3 515 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 ITPKCQ96DU7 683 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 TMPRSS4Q9NRS4 437 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 ABCA9Q8IUA7 1624 aa6.98□□□□□ -1.29
CSMD3-205ENST00000462254 MAPKBP1O60336 1514 aa6.97□□□□□ -1.29
CSMD3-205ENST00000462254 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.97□□□□□ -1.29
CSMD3-205ENST00000462254 ERVH48-1M5A8F1 160 aa6.97□□□□□ -1.29
CSMD3-205ENST00000462254 TIMP2P16035 220 aa6.97□□□□□ -1.29
CSMD3-205ENST00000462254 WDR4P57081 412 aaKnown RBP6.97□□□□□ -1.29
CSMD3-205ENST00000462254 MCCD1P59942 119 aaPredicted RBP6.97□□□□□ -1.29
CSMD3-205ENST00000462254 PPP1R26Q5T8A7 1209 aaPredicted RBP6.97□□□□□ -1.29
CSMD3-205ENST00000462254 ZNF428Q96B54 188 aa6.97□□□□□ -1.29
CSMD3-205ENST00000462254 ZFAND3Q9H8U3 227 aa6.97□□□□□ -1.29
CSMD3-205ENST00000462254 DACH1Q9UI36 760 aa6.97□□□□□ -1.29
CSMD3-205ENST00000462254 ABCC10Q5T3U5 1492 aa6.97□□□□□ -1.29
CSMD3-205ENST00000462254 WDR7Q9Y4E6 1490 aa6.97□□□□□ -1.29
CSMD3-205ENST00000462254 PHLDB1Q86UU1 1377 aa6.96□□□□□ -1.29
CSMD3-205ENST00000462254 ZIC2O95409 532 aaPredicted RBP6.96□□□□□ -1.3
CSMD3-205ENST00000462254 CYB5RLQ6IPT4 315 aa6.96□□□□□ -1.3
CSMD3-205ENST00000462254 PHTF2Q8N3S3 785 aa6.96□□□□□ -1.3
CSMD3-205ENST00000462254 AAASQ9NRG9 546 aa6.96□□□□□ -1.3
CSMD3-205ENST00000462254 PTPN23Q9H3S7 1636 aa6.96□□□□□ -1.3
CSMD3-205ENST00000462254 TSPOAP1O95153 1857 aa6.96□□□□□ -1.3
CSMD3-205ENST00000462254 ASXL2Q76L83 1435 aa6.95□□□□□ -1.3
CSMD3-205ENST00000462254 PIK3CDO00329 1044 aa6.95□□□□□ -1.3
CSMD3-205ENST00000462254 SOX11P35716 441 aa6.95□□□□□ -1.3
CSMD3-205ENST00000462254 TRAF7Q6Q0C0 670 aa6.95□□□□□ -1.3
CSMD3-205ENST00000462254 GLMNQ92990 594 aa6.95□□□□□ -1.3
CSMD3-205ENST00000462254 CCDC85AQ96PX6 553 aaPredicted RBP6.95□□□□□ -1.3
CSMD3-205ENST00000462254 CROCC2H7BZ55 1655 aa6.95□□□□□ -1.3
CSMD3-205ENST00000462254 DIP2BQ9P265 1576 aa6.95□□□□□ -1.3
CSMD3-205ENST00000462254 MAP3K4Q9Y6R4 1608 aa6.94□□□□□ -1.3
CSMD3-205ENST00000462254 MYOM3Q5VTT5 1437 aa6.94□□□□□ -1.3
CSMD3-205ENST00000462254 RRBP1Q9P2E9 1410 aaKnown RBP6.94□□□□□ -1.3
CSMD3-205ENST00000462254 PPRC1Q5VV67 1664 aaKnown RBP6.94□□□□□ -1.3
CSMD3-205ENST00000462254 AXIN1O15169 862 aa6.94□□□□□ -1.3
CSMD3-205ENST00000462254 CAPN5O15484 640 aaPredicted RBP6.94□□□□□ -1.3
CSMD3-205ENST00000462254 SEPT12Q8IYM1 358 aa6.94□□□□□ -1.3
CSMD3-205ENST00000462254 CRIPAKQ8N1N5 446 aa6.94□□□□□ -1.3
CSMD3-205ENST00000462254 ZNF784Q8NCA9 323 aaPredicted RBP6.94□□□□□ -1.3
CSMD3-205ENST00000462254 ZNF592Q92610 1267 aa6.94□□□□□ -1.3
CSMD3-205ENST00000462254 CDCA7Q9BWT1 371 aaPredicted RBP6.94□□□□□ -1.3
CSMD3-205ENST00000462254 EMILIN1Q9Y6C2 1016 aa6.94□□□□□ -1.3
CSMD3-205ENST00000462254 PLEKHD1A6NEE1 506 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 SMCPP49901 116 aaPredicted RBP6.93□□□□□ -1.3
CSMD3-205ENST00000462254 DHX9Q08211 1270 aaKnown RBP6.93□□□□□ -1.3
CSMD3-205ENST00000462254 CBLBQ13191 982 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 CTC1Q2NKJ3 1217 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 SLFNL1Q499Z3 407 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 UCN2Q96RP3 112 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 CDK11AQ9UQ88 783 aaPredicted RBP6.93□□□□□ -1.3
CSMD3-205ENST00000462254 AMOTL2Q9Y2J4 779 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 PCDHB11Q9Y5F2 797 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 SAMD9LQ8IVG5 1584 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 FGD6Q6ZV73 1430 aa6.93□□□□□ -1.3
CSMD3-205ENST00000462254 GPATCH8Q9UKJ3 1502 aaKnown RBP6.92□□□□□ -1.3
CSMD3-205ENST00000462254 DNMT1P26358 1616 aaKnown RBP6.92□□□□□ -1.3
CSMD3-205ENST00000462254 LILRA1O75019 489 aa6.92□□□□□ -1.3
CSMD3-205ENST00000462254 BMP1P13497 986 aa6.92□□□□□ -1.3
CSMD3-205ENST00000462254 HSP90B1P14625 803 aaKnown RBP6.92□□□□□ -1.3
CSMD3-205ENST00000462254 ADD1P35611 737 aaKnown RBP6.92□□□□□ -1.3
CSMD3-205ENST00000462254 SCTRP47872 440 aa6.92□□□□□ -1.3
CSMD3-205ENST00000462254 KCNA1Q09470 495 aa6.92□□□□□ -1.3
CSMD3-205ENST00000462254 RNF20Q5VTR2 975 aa6.92□□□□□ -1.3
CSMD3-205ENST00000462254 RNF135Q8IUD6 432 aa6.92□□□□□ -1.3
CSMD3-205ENST00000462254 CYLDQ9NQC7 956 aa6.92□□□□□ -1.3
CSMD3-205ENST00000462254 ACIN1Q9UKV3 1341 aaKnown RBP6.92□□□□□ -1.3
CSMD3-205ENST00000462254 TCOF1Q13428 1488 aaKnown RBP6.92□□□□□ -1.3
CSMD3-205ENST00000462254 GLI2P10070 1586 aa6.91□□□□□ -1.3
CSMD3-205ENST00000462254 ADGBQ8N7X0 1667 aa6.91□□□□□ -1.3
CSMD3-205ENST00000462254 CALR3Q96L12 384 aaKnown RBP6.91□□□□□ -1.3
CSMD3-205ENST00000462254 PGPEP1Q9NXJ5 209 aa6.91□□□□□ -1.3
CSMD3-205ENST00000462254 CHIC2Q9UKJ5 165 aa6.91□□□□□ -1.3
CSMD3-205ENST00000462254 ARAP3Q8WWN8 1544 aa6.91□□□□□ -1.3
CSMD3-205ENST00000462254 TBC1D9Q6ZT07 1266 aa6.9□□□□□ -1.3
CSMD3-205ENST00000462254 Q6ZVU0 165 aa6.9□□□□□ -1.3
CSMD3-205ENST00000462254 TRIM46Q7Z4K8 759 aa6.9□□□□□ -1.3
CSMD3-205ENST00000462254 AGBL1Q96MI9 1066 aa6.9□□□□□ -1.3
CSMD3-205ENST00000462254 CCNB3Q8WWL7 1395 aa6.9□□□□□ -1.31
CSMD3-205ENST00000462254 MIA2Q96PC5 1412 aa6.9□□□□□ -1.31
CSMD3-205ENST00000462254 CAMSAP2Q08AD1 1489 aa6.9□□□□□ -1.31
CSMD3-205ENST00000462254 ARHGAP5Q13017 1502 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms