RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 POTEDQ86YR6 584 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 PTPN14Q15678 1187 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.06□□□□□ -1.44
CSMD3-204ENST00000455883 HMG20BQ9P0W2 317 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 MAP3K11Q16584 847 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC57Q2TAC2 916 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 MCTP1Q6DN14 999 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 BCAP29Q9UHQ4 241 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 SEC62Q99442 399 aaKnown RBP6.06□□□□□ -1.44
CSMD3-204ENST00000455883 DDX19AQ9NUU7 478 aaKnown RBP6.06□□□□□ -1.44
CSMD3-204ENST00000455883 PDE6BP35913 854 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 TTC5Q8N0Z6 440 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 CFAP74Q9C0B2 1584 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 K7ELQ4 463 aaPredicted RBP6.06□□□□□ -1.44
CSMD3-204ENST00000455883 ATP5DP30049 168 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 ANAPC15P60006 121 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC6Q16204 474 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 ELP1O95163 1332 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 TEFQ10587 303 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 STXBP4Q6ZWJ1 553 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 ZNF592Q92610 1267 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 IFT74Q96LB3 600 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 FMNL2Q96PY5 1086 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 KIAA1524Q8TCG1 905 aa6.06□□□□□ -1.44
CSMD3-204ENST00000455883 EPRSP07814 1512 aaKnown RBP6.05□□□□□ -1.44
CSMD3-204ENST00000455883 KIAA1107Q9UPP5 1409 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 ARHGAP25P42331 645 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 NEUROD2Q15784 382 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 ENOX2Q16206 610 aaKnown RBP6.05□□□□□ -1.44
CSMD3-204ENST00000455883 ALDH1L2Q3SY69 923 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC30Q5VVM6 783 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 RAB11FIP3O75154 756 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 CLCN1P35523 988 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 GABPB2Q8TAK5 448 aaPredicted RBP6.05□□□□□ -1.44
CSMD3-204ENST00000455883 TNMDQ9H2S6 317 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 PAFAH1B1P43034 410 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 NAP1L1P55209 391 aaKnown RBP6.05□□□□□ -1.44
CSMD3-204ENST00000455883 ANO10Q9NW15 660 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 GBP1P32455 592 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 IRX4P78413 519 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 ANKRD45Q5TZF3 282 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 CEP112Q8N8E3 955 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC12Q8WUD4 166 aaPredicted RBP6.05□□□□□ -1.44
CSMD3-204ENST00000455883 FAM186AA6NE01 2351 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 REREQ9P2R6 1566 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 NAP1L3Q99457 506 aaPredicted RBP6.05□□□□□ -1.44
CSMD3-204ENST00000455883 GABPB1Q06547 395 aaPredicted RBP6.05□□□□□ -1.44
CSMD3-204ENST00000455883 RGL3Q3MIN7 710 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 TAF4BQ92750 862 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 ARFGAP3Q9NP61 516 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 ZSCAN16Q9H4T2 348 aaPredicted RBP6.05□□□□□ -1.44
CSMD3-204ENST00000455883 CDK5RAP3Q96JB5 506 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 CYP46A1Q9Y6A2 500 aa6.05□□□□□ -1.44
CSMD3-204ENST00000455883 ARMC9Q7Z3E5 817 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 BACH2Q9BYV9 841 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 CLGNO14967 610 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 OPA1O60313 960 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 RSRC1Q96IZ7 334 aaKnown RBP6.04□□□□□ -1.44
CSMD3-204ENST00000455883 ATP2A1O14983 1001 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 IQSEC3Q9UPP2 1182 aaPredicted RBP6.04□□□□□ -1.44
CSMD3-204ENST00000455883 SPA17Q15506 151 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 GRIPAP1Q4V328 841 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 CFAP157Q5JU67 520 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 CERS3Q8IU89 383 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 SEPT11Q9NVA2 429 aaKnown RBP6.04□□□□□ -1.44
CSMD3-204ENST00000455883 STIM2Q9P246 746 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 NBPF7P0C2Y1 421 aaPredicted RBP6.04□□□□□ -1.44
CSMD3-204ENST00000455883 ALDH3A1P30838 453 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 NCBP3Q53F19 620 aaKnown RBP6.04□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC178Q5BJE1 867 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 PRM3Q9NNZ6 103 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 ZFYP08048 801 aaPredicted RBP6.04□□□□□ -1.44
CSMD3-204ENST00000455883 NT5C2P49902 561 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 FAM184BQ9ULE4 1060 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 ATAD2BQ9ULI0 1458 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 RASAL2Q9UJF2 1139 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 UHRF1BP1Q6BDS2 1440 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 MAP7Q14244 749 aa6.04□□□□□ -1.44
CSMD3-204ENST00000455883 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.04□□□□□ -1.44
CSMD3-204ENST00000455883 PLXNC1O60486 1568 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 TSGA10Q9BZW7 698 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 FKBP15Q5T1M5 1219 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 SMARCC1Q92922 1105 aaPredicted RBP6.03□□□□□ -1.44
CSMD3-204ENST00000455883 UPF3BQ9BZI7 483 aaKnown RBP6.03□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC77Q9BR77 488 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 NUP62CLQ9H1M0 184 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 ANO2Q9NQ90 1003 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.03□□□□□ -1.44
CSMD3-204ENST00000455883 RASSF2P50749 326 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 DAAM2Q86T65 1068 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 RNF168Q8IYW5 571 aaPredicted RBP6.03□□□□□ -1.44
CSMD3-204ENST00000455883 ARHGAP24Q8N264 748 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 FSD2A1L4K1 749 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 HNRNPMP52272 730 aaKnown RBP eCLIP6.03□□□□□ -1.44
CSMD3-204ENST00000455883 STX1AQ16623 288 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 MAP3K21Q5TCX8 1036 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 SCN8AQ9UQD0 1980 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 UQCRHLA0A096LP55 91 aa6.03□□□□□ -1.44
CSMD3-204ENST00000455883 MAP4K4O95819 1239 aaPredicted RBP6.03□□□□□ -1.44
CSMD3-204ENST00000455883 UQCRHP07919 91 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms