RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 COL24A1Q17RW2 1714 aa22.27■■□□□ 1.16
NCKIPSD-208ENST00000454134 MSL1Q68DK7 614 aa22.27■■□□□ 1.16
NCKIPSD-208ENST00000454134 DIAPH1O60610 1272 aaKnown RBP22.26■■□□□ 1.15
NCKIPSD-208ENST00000454134 CABP4P57796 275 aa22.26■■□□□ 1.15
NCKIPSD-208ENST00000454134 KLHL34Q8N239 644 aa22.26■■□□□ 1.15
NCKIPSD-208ENST00000454134 PHF14O94880 888 aa22.25■■□□□ 1.15
NCKIPSD-208ENST00000454134 HMGB2P26583 209 aaKnown RBP22.25■■□□□ 1.15
NCKIPSD-208ENST00000454134 ATP6V1AP38606 617 aa22.25■■□□□ 1.15
NCKIPSD-208ENST00000454134 FLAD1Q8NFF5 587 aa22.23■■□□□ 1.15
NCKIPSD-208ENST00000454134 RBM42Q9BTD8 480 aaKnown RBP22.23■■□□□ 1.15
NCKIPSD-208ENST00000454134 UBR3Q6ZT12 1888 aa22.22■■□□□ 1.15
NCKIPSD-208ENST00000454134 SLC4A9Q96Q91 983 aa22.22■■□□□ 1.15
NCKIPSD-208ENST00000454134 MAP3K5Q99683 1374 aa22.22■■□□□ 1.15
NCKIPSD-208ENST00000454134 COL3A1P02461 1466 aaPredicted RBP22.22■■□□□ 1.15
NCKIPSD-208ENST00000454134 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.21■■□□□ 1.15
NCKIPSD-208ENST00000454134 NFATC2IPQ8NCF5 419 aa22.21■■□□□ 1.15
NCKIPSD-208ENST00000454134 U2SURPO15042 1029 aaKnown RBP22.2■■□□□ 1.14
NCKIPSD-208ENST00000454134 GNPATO15228 680 aa22.2■■□□□ 1.14
NCKIPSD-208ENST00000454134 AKAP4Q5JQC9 854 aa22.2■■□□□ 1.14
NCKIPSD-208ENST00000454134 YY1P25490 414 aa22.19■■□□□ 1.14
NCKIPSD-208ENST00000454134 SCN11AQ9UI33 1791 aa22.18■■□□□ 1.14
NCKIPSD-208ENST00000454134 PTCD1O75127 700 aaKnown RBP22.18■■□□□ 1.14
NCKIPSD-208ENST00000454134 MTHFSDQ2M296 383 aaKnown RBP22.18■■□□□ 1.14
NCKIPSD-208ENST00000454134 LGR6Q9HBX8 967 aa22.18■■□□□ 1.14
NCKIPSD-208ENST00000454134 SSFA2P28290 1259 aa22.17■■□□□ 1.14
NCKIPSD-208ENST00000454134 NLGN2Q8NFZ4 835 aa22.17■■□□□ 1.14
NCKIPSD-208ENST00000454134 ZNF831Q5JPB2 1677 aa22.14■■□□□ 1.14
NCKIPSD-208ENST00000454134 RNMTO43148 476 aaKnown RBP22.14■■□□□ 1.13
NCKIPSD-208ENST00000454134 PPP2R1AP30153 589 aa22.13■■□□□ 1.13
NCKIPSD-208ENST00000454134 SLC52A2Q9HAB3 445 aa22.13■■□□□ 1.13
NCKIPSD-208ENST00000454134 COL5A3P25940 1745 aaPredicted RBP22.12■■□□□ 1.13
NCKIPSD-208ENST00000454134 GPR162Q16538 588 aa22.12■■□□□ 1.13
NCKIPSD-208ENST00000454134 PELP1Q8IZL8 1130 aaKnown RBP22.12■■□□□ 1.13
NCKIPSD-208ENST00000454134 CFAP53Q96M91 514 aa22.12■■□□□ 1.13
NCKIPSD-208ENST00000454134 RTCBQ9Y3I0 505 aaKnown RBP22.12■■□□□ 1.13
NCKIPSD-208ENST00000454134 VIRMAQ69YN4 1812 aaKnown RBP22.11■■□□□ 1.13
NCKIPSD-208ENST00000454134 CNTNAP4Q9C0A0 1308 aa22.1■■□□□ 1.13
NCKIPSD-208ENST00000454134 SLC39A6Q13433 755 aa22.1■■□□□ 1.13
NCKIPSD-208ENST00000454134 RC3H1Q5TC82 1133 aaKnown RBP22.1■■□□□ 1.13
NCKIPSD-208ENST00000454134 MRC1P22897 1456 aa22.09■■□□□ 1.13
NCKIPSD-208ENST00000454134 TRAPPC3LQ5T215 181 aa22.09■■□□□ 1.13
NCKIPSD-208ENST00000454134 ADAMTS7Q9UKP4 1686 aa22.08■■□□□ 1.13
NCKIPSD-208ENST00000454134 MYH14Q7Z406 1995 aaKnown RBP22.08■■□□□ 1.12
NCKIPSD-208ENST00000454134 TJP1Q07157 1748 aa22.08■■□□□ 1.12
NCKIPSD-208ENST00000454134 RPS6KA4O75676 772 aa22.07■■□□□ 1.12
NCKIPSD-208ENST00000454134 CRKLP46109 303 aaKnown RBP22.07■■□□□ 1.12
NCKIPSD-208ENST00000454134 ARHGEF1Q92888 912 aaKnown RBP22.07■■□□□ 1.12
NCKIPSD-208ENST00000454134 PRKAR2BP31323 418 aa22.06■■□□□ 1.12
NCKIPSD-208ENST00000454134 GAS2L2Q8NHY3 880 aa22.06■■□□□ 1.12
NCKIPSD-208ENST00000454134 PHACTR3Q96KR7 559 aa22.06■■□□□ 1.12
NCKIPSD-208ENST00000454134 RSPH6AQ9H0K4 717 aa22.06■■□□□ 1.12
NCKIPSD-208ENST00000454134 CD2APQ9Y5K6 639 aa22.06■■□□□ 1.12
NCKIPSD-208ENST00000454134 U2AF1L5P0DN76 240 aaPredicted RBP22.05■■□□□ 1.12
NCKIPSD-208ENST00000454134 U2AF1Q01081 240 aaKnown RBP eCLIP22.05■■□□□ 1.12
NCKIPSD-208ENST00000454134 DNAJC10Q8IXB1 793 aa22.05■■□□□ 1.12
NCKIPSD-208ENST00000454134 NUDCQ9Y266 331 aa22.05■■□□□ 1.12
NCKIPSD-208ENST00000454134 UTRNP46939 3433 aa22.04■■□□□ 1.12
NCKIPSD-208ENST00000454134 GNAT3A8MTJ3 354 aa22.04■■□□□ 1.12
NCKIPSD-208ENST00000454134 MMP10P09238 476 aa22.04■■□□□ 1.12
NCKIPSD-208ENST00000454134 ADRA2BP18089 450 aa22.04■■□□□ 1.12
NCKIPSD-208ENST00000454134 RFC4P35249 363 aa22.04■■□□□ 1.12
NCKIPSD-208ENST00000454134 IL17REQ8NFR9 667 aa22.04■■□□□ 1.12
NCKIPSD-208ENST00000454134 KCPQ6ZWJ8 1503 aa22.03■■□□□ 1.12
NCKIPSD-208ENST00000454134 YBX3P16989 372 aaKnown RBP eCLIP22.03■■□□□ 1.12
NCKIPSD-208ENST00000454134 INTS5Q6P9B9 1019 aaKnown RBP22.03■■□□□ 1.12
NCKIPSD-208ENST00000454134 CICQ96RK0 1608 aaPredicted RBP22.02■■□□□ 1.12
NCKIPSD-208ENST00000454134 C4AP0C0L4 1744 aa22.02■■□□□ 1.12
NCKIPSD-208ENST00000454134 GYS1P13807 737 aa22.01■■□□□ 1.11
NCKIPSD-208ENST00000454134 CHD4Q14839 1912 aa22■■□□□ 1.11
NCKIPSD-208ENST00000454134 TEFQ10587 303 aa22■■□□□ 1.11
NCKIPSD-208ENST00000454134 NLGN1Q8N2Q7 840 aa22■■□□□ 1.11
NCKIPSD-208ENST00000454134 SRP68Q9UHB9 627 aaKnown RBP22■■□□□ 1.11
NCKIPSD-208ENST00000454134 WWC3Q9ULE0 1092 aa22■■□□□ 1.11
NCKIPSD-208ENST00000454134 GOLGB1Q14789 3259 aaKnown RBP21.99■■□□□ 1.11
NCKIPSD-208ENST00000454134 CYP19A1P11511 503 aaPredicted RBP21.99■■□□□ 1.11
NCKIPSD-208ENST00000454134 CCDC87Q9NVE4 849 aa21.99■■□□□ 1.11
NCKIPSD-208ENST00000454134 UBR2Q8IWV8 1755 aa21.97■■□□□ 1.11
NCKIPSD-208ENST00000454134 FCHSD2O94868 740 aa21.97■■□□□ 1.11
NCKIPSD-208ENST00000454134 TTC5Q8N0Z6 440 aa21.97■■□□□ 1.11
NCKIPSD-208ENST00000454134 USP42Q9H9J4 1324 aaKnown RBP21.96■■□□□ 1.11
NCKIPSD-208ENST00000454134 SIPA1L3O60292 1781 aaPredicted RBP21.96■■□□□ 1.11
NCKIPSD-208ENST00000454134 FKBP8Q14318 412 aa21.95■■□□□ 1.1
NCKIPSD-208ENST00000454134 ZNF790Q6PG37 636 aa21.95■■□□□ 1.1
NCKIPSD-208ENST00000454134 VSIG10Q8N0Z9 540 aa21.95■■□□□ 1.1
NCKIPSD-208ENST00000454134 ZNF784Q8NCA9 323 aaPredicted RBP21.95■■□□□ 1.1
NCKIPSD-208ENST00000454134 ZNF496Q96IT1 587 aaPredicted RBP21.95■■□□□ 1.1
NCKIPSD-208ENST00000454134 ZBTB1Q9Y2K1 713 aa21.95■■□□□ 1.1
NCKIPSD-208ENST00000454134 SOS1Q07889 1333 aaPredicted RBP21.95■■□□□ 1.1
NCKIPSD-208ENST00000454134 CEMIPQ8WUJ3 1361 aa21.95■■□□□ 1.1
NCKIPSD-208ENST00000454134 GRIN3BO60391 1043 aa21.94■■□□□ 1.1
NCKIPSD-208ENST00000454134 DDX10Q13206 875 aaKnown RBP21.94■■□□□ 1.1
NCKIPSD-208ENST00000454134 MCM10Q7L590 875 aa21.93■■□□□ 1.1
NCKIPSD-208ENST00000454134 PARP3Q9Y6F1 533 aa21.93■■□□□ 1.1
NCKIPSD-208ENST00000454134 KCNQ3O43525 872 aa21.92■■□□□ 1.1
NCKIPSD-208ENST00000454134 CANXP27824 592 aaKnown RBP21.92■■□□□ 1.1
NCKIPSD-208ENST00000454134 HEG1Q9ULI3 1381 aa21.91■■□□□ 1.1
NCKIPSD-208ENST00000454134 BTBD11A6QL63 1104 aa21.91■■□□□ 1.1
NCKIPSD-208ENST00000454134 DCTN1Q14203 1278 aa21.91■■□□□ 1.1
NCKIPSD-208ENST00000454134 USPL1Q5W0Q7 1092 aa21.91■■□□□ 1.1
NCKIPSD-208ENST00000454134 RTF1Q92541 710 aaKnown RBP21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms