RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 PALLDQ8WX93 1383 aa26.63■■□□□ 1.85
COL9A3-202ENST00000452372 FCHSD2O94868 740 aa26.63■■□□□ 1.85
COL9A3-202ENST00000452372 RSPH6AQ9H0K4 717 aa26.63■■□□□ 1.85
COL9A3-202ENST00000452372 MTHFSDQ2M296 383 aaKnown RBP26.62■■□□□ 1.85
COL9A3-202ENST00000452372 AKAP4Q5JQC9 854 aa26.61■■□□□ 1.85
COL9A3-202ENST00000452372 C5P01031 1676 aa26.6■■□□□ 1.85
COL9A3-202ENST00000452372 ERVV-2B6SEH9 535 aa26.6■■□□□ 1.85
COL9A3-202ENST00000452372 PRKAR2BP31323 418 aa26.6■■□□□ 1.85
COL9A3-202ENST00000452372 SMARCC1Q92922 1105 aaPredicted RBP26.59■■□□□ 1.85
COL9A3-202ENST00000452372 POLD1P28340 1107 aa26.58■■□□□ 1.85
COL9A3-202ENST00000452372 AMIGO3Q86WK7 504 aa26.58■■□□□ 1.85
COL9A3-202ENST00000452372 PHACTR3Q96KR7 559 aa26.58■■□□□ 1.85
COL9A3-202ENST00000452372 KDM6AO15550 1401 aaPredicted RBP26.57■■□□□ 1.84
COL9A3-202ENST00000452372 GAS2L2Q8NHY3 880 aa26.57■■□□□ 1.84
COL9A3-202ENST00000452372 TMOD3Q9NYL9 352 aa26.57■■□□□ 1.84
COL9A3-202ENST00000452372 ASAP1Q9ULH1 1129 aa26.56■■□□□ 1.84
COL9A3-202ENST00000452372 MSH5O43196 834 aa26.54■■□□□ 1.84
COL9A3-202ENST00000452372 GOLGB1Q14789 3259 aaKnown RBP26.54■■□□□ 1.84
COL9A3-202ENST00000452372 SCN11AQ9UI33 1791 aa26.53■■□□□ 1.84
COL9A3-202ENST00000452372 SMIM5Q71RC9 77 aa26.53■■□□□ 1.84
COL9A3-202ENST00000452372 C4BP0C0L5 1744 aa26.53■■□□□ 1.84
COL9A3-202ENST00000452372 LOC102724428A0A0B4J2F2 783 aa26.52■■□□□ 1.84
COL9A3-202ENST00000452372 SIK1P57059 783 aa26.52■■□□□ 1.84
COL9A3-202ENST00000452372 CABP4P57796 275 aa26.52■■□□□ 1.84
COL9A3-202ENST00000452372 CHD4Q14839 1912 aa26.52■■□□□ 1.84
COL9A3-202ENST00000452372 MSL1Q68DK7 614 aa26.52■■□□□ 1.84
COL9A3-202ENST00000452372 NLGN2Q8NFZ4 835 aa26.52■■□□□ 1.84
COL9A3-202ENST00000452372 LGR6Q9HBX8 967 aa26.52■■□□□ 1.84
COL9A3-202ENST00000452372 ATG3Q9NT62 314 aa26.52■■□□□ 1.84
COL9A3-202ENST00000452372 RNMTO43148 476 aaKnown RBP26.51■■□□□ 1.83
COL9A3-202ENST00000452372 ANP32CO43423 234 aa26.51■■□□□ 1.83
COL9A3-202ENST00000452372 PNNQ9H307 717 aaKnown RBP26.51■■□□□ 1.83
COL9A3-202ENST00000452372 UBR3Q6ZT12 1888 aa26.51■■□□□ 1.83
COL9A3-202ENST00000452372 GNAT3A8MTJ3 354 aa26.5■■□□□ 1.83
COL9A3-202ENST00000452372 HMGB2P26583 209 aaKnown RBP26.5■■□□□ 1.83
COL9A3-202ENST00000452372 ITPK1Q13572 414 aa26.5■■□□□ 1.83
COL9A3-202ENST00000452372 KLHL34Q8N239 644 aa26.5■■□□□ 1.83
COL9A3-202ENST00000452372 LINC00116Q8NCU8 138 aa26.5■■□□□ 1.83
COL9A3-202ENST00000452372 FLAD1Q8NFF5 587 aa26.5■■□□□ 1.83
COL9A3-202ENST00000452372 NFATC2IPQ8NCF5 419 aa26.49■■□□□ 1.83
COL9A3-202ENST00000452372 PLEKHF1Q96S99 279 aa26.49■■□□□ 1.83
COL9A3-202ENST00000452372 VIRMAQ69YN4 1812 aaKnown RBP26.49■■□□□ 1.83
COL9A3-202ENST00000452372 ADAMTS7Q9UKP4 1686 aa26.48■■□□□ 1.83
COL9A3-202ENST00000452372 NEFMP07197 916 aa26.48■■□□□ 1.83
COL9A3-202ENST00000452372 GPR162Q16538 588 aa26.46■■□□□ 1.83
COL9A3-202ENST00000452372 AK7Q96M32 723 aa26.46■■□□□ 1.83
COL9A3-202ENST00000452372 SLC4A9Q96Q91 983 aa26.46■■□□□ 1.83
COL9A3-202ENST00000452372 SLC52A2Q9HAB3 445 aa26.46■■□□□ 1.83
COL9A3-202ENST00000452372 ZNF784Q8NCA9 323 aaPredicted RBP26.45■■□□□ 1.82
COL9A3-202ENST00000452372 IL17REQ8NFR9 667 aa26.45■■□□□ 1.82
COL9A3-202ENST00000452372 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.44■■□□□ 1.82
COL9A3-202ENST00000452372 ATP6V1AP38606 617 aa26.44■■□□□ 1.82
COL9A3-202ENST00000452372 WDR43Q15061 677 aaKnown RBP eCLIP26.44■■□□□ 1.821e-6■□□□□ 9.5
COL9A3-202ENST00000452372 MRC1P22897 1456 aa26.42■■□□□ 1.82
COL9A3-202ENST00000452372 PHF14O94880 888 aa26.42■■□□□ 1.82
COL9A3-202ENST00000452372 MAPK8IP3Q9UPT6 1336 aa26.41■■□□□ 1.82
COL9A3-202ENST00000452372 HTATSF1O43719 755 aaKnown RBP26.41■■□□□ 1.82
COL9A3-202ENST00000452372 SSFA2P28290 1259 aa26.41■■□□□ 1.82
COL9A3-202ENST00000452372 ADAMTS8Q9UP79 889 aa26.41■■□□□ 1.82
COL9A3-202ENST00000452372 YBX3P16989 372 aaKnown RBP eCLIP26.4■■□□□ 1.82
COL9A3-202ENST00000452372 RTF1Q92541 710 aaKnown RBP26.4■■□□□ 1.82
COL9A3-202ENST00000452372 CEMIPQ8WUJ3 1361 aa26.4■■□□□ 1.82
COL9A3-202ENST00000452372 TEFQ10587 303 aa26.39■■□□□ 1.82
COL9A3-202ENST00000452372 NFE2L2Q16236 605 aa26.39■■□□□ 1.82
COL9A3-202ENST00000452372 CCDC184Q52MB2 194 aa26.39■■□□□ 1.82
COL9A3-202ENST00000452372 CD2APQ9Y5K6 639 aa26.39■■□□□ 1.82
COL9A3-202ENST00000452372 PELP1Q8IZL8 1130 aaKnown RBP26.37■■□□□ 1.81
COL9A3-202ENST00000452372 DLG5Q8TDM6 1919 aa26.37■■□□□ 1.81
COL9A3-202ENST00000452372 ZNF831Q5JPB2 1677 aa26.36■■□□□ 1.81
COL9A3-202ENST00000452372 GNPATO15228 680 aa26.36■■□□□ 1.81
COL9A3-202ENST00000452372 RBM42Q9BTD8 480 aaKnown RBP26.36■■□□□ 1.81
COL9A3-202ENST00000452372 MCM10Q7L590 875 aa26.35■■□□□ 1.81
COL9A3-202ENST00000452372 RUNDC1Q96C34 613 aa26.35■■□□□ 1.81
COL9A3-202ENST00000452372 MYH14Q7Z406 1995 aaKnown RBP26.35■■□□□ 1.81
COL9A3-202ENST00000452372 SIPA1L3O60292 1781 aaPredicted RBP26.34■■□□□ 1.81
COL9A3-202ENST00000452372 PTCD1O75127 700 aaKnown RBP26.33■■□□□ 1.81
COL9A3-202ENST00000452372 SLC39A6Q13433 755 aa26.33■■□□□ 1.81
COL9A3-202ENST00000452372 DCTN1Q14203 1278 aa26.33■■□□□ 1.81
COL9A3-202ENST00000452372 RC3H1Q5TC82 1133 aaKnown RBP26.33■■□□□ 1.81
COL9A3-202ENST00000452372 CCDC146Q8IYE0 955 aa26.33■■□□□ 1.81
COL9A3-202ENST00000452372 MRS2Q9HD23 443 aa26.32■■□□□ 1.8
COL9A3-202ENST00000452372 COL5A3P25940 1745 aaPredicted RBP26.31■■□□□ 1.8
COL9A3-202ENST00000452372 TMPOP42166 694 aaKnown RBP26.31■■□□□ 1.8
COL9A3-202ENST00000452372 RIPK4P57078 832 aa26.3■■□□□ 1.8
COL9A3-202ENST00000452372 PNISRQ8TF01 805 aaKnown RBP26.3■■□□□ 1.8
COL9A3-202ENST00000452372 GRIN3BO60391 1043 aa26.29■■□□□ 1.8
COL9A3-202ENST00000452372 TRAPPC3LQ5T215 181 aa26.29■■□□□ 1.8
COL9A3-202ENST00000452372 ARHGEF1Q92888 912 aaKnown RBP26.29■■□□□ 1.8
COL9A3-202ENST00000452372 RTCBQ9Y3I0 505 aaKnown RBP26.29■■□□□ 1.8
COL9A3-202ENST00000452372 BTBD11A6QL63 1104 aa26.28■■□□□ 1.8
COL9A3-202ENST00000452372 ZNF790Q6PG37 636 aa26.28■■□□□ 1.8
COL9A3-202ENST00000452372 CNTNAP4Q9C0A0 1308 aa26.28■■□□□ 1.8
COL9A3-202ENST00000452372 RPS6KA4O75676 772 aa26.27■■□□□ 1.8
COL9A3-202ENST00000452372 TTC5Q8N0Z6 440 aa26.27■■□□□ 1.8
COL9A3-202ENST00000452372 UBR2Q8IWV8 1755 aa26.26■■□□□ 1.79
COL9A3-202ENST00000452372 KCPQ6ZWJ8 1503 aa26.26■■□□□ 1.79
COL9A3-202ENST00000452372 TAF7Q15545 349 aaPredicted RBP26.26■■□□□ 1.79
COL9A3-202ENST00000452372 MMP10P09238 476 aa26.25■■□□□ 1.79
COL9A3-202ENST00000452372 VSIG10Q8N0Z9 540 aa26.25■■□□□ 1.79
COL9A3-202ENST00000452372 RRP7AQ9Y3A4 280 aaKnown RBP26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms