RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 CCDC27Q2M243 656 aa15.62■□□□□ 0.09
LINC00339-205ENST00000452322 PTF1AQ7RTS3 328 aa15.62■□□□□ 0.09
LINC00339-205ENST00000452322 PIGBQ92521 554 aa15.62■□□□□ 0.09
LINC00339-205ENST00000452322 NFATC2IPQ8NCF5 419 aa15.61■□□□□ 0.09
LINC00339-205ENST00000452322 SF3B2Q13435 895 aaKnown RBP15.6■□□□□ 0.09
LINC00339-205ENST00000452322 UPF1Q92900 1129 aaKnown RBP eCLIP15.6■□□□□ 0.09
LINC00339-205ENST00000452322 PAPPAQ13219 1627 aa15.59■□□□□ 0.09
LINC00339-205ENST00000452322 THUMPD2Q9BTF0 503 aaKnown RBP15.59■□□□□ 0.09
LINC00339-205ENST00000452322 RGPD3A6NKT7 1758 aaPredicted RBP15.59■□□□□ 0.09
LINC00339-205ENST00000452322 RGPD4Q7Z3J3 1758 aa15.59■□□□□ 0.09
LINC00339-205ENST00000452322 SENP3-EIF4A1A0A087X0R7 540 aa15.58■□□□□ 0.08
LINC00339-205ENST00000452322 APBA3O96018 575 aa15.58■□□□□ 0.08
LINC00339-205ENST00000452322 WWC1Q8IX03 1113 aa15.58■□□□□ 0.08
LINC00339-205ENST00000452322 PLSCR1O15162 318 aa15.57■□□□□ 0.08
LINC00339-205ENST00000452322 CALD1Q05682 793 aaKnown RBP15.57■□□□□ 0.08
LINC00339-205ENST00000452322 TAF7Q15545 349 aaPredicted RBP15.57■□□□□ 0.08
LINC00339-205ENST00000452322 SMARCC1Q92922 1105 aaPredicted RBP15.57■□□□□ 0.08
LINC00339-205ENST00000452322 BAG6P46379 1132 aa15.56■□□□□ 0.08
LINC00339-205ENST00000452322 ATG3Q9NT62 314 aa15.56■□□□□ 0.08
LINC00339-205ENST00000452322 SALL2Q9Y467 1007 aaPredicted RBP15.56■□□□□ 0.08
LINC00339-205ENST00000452322 PALLDQ8WX93 1383 aa15.55■□□□□ 0.08
LINC00339-205ENST00000452322 LY75O60449 1722 aa15.55■□□□□ 0.08
LINC00339-205ENST00000452322 BTBD11A6QL63 1104 aa15.55■□□□□ 0.08
LINC00339-205ENST00000452322 BABAM1Q9NWV8 329 aa15.55■□□□□ 0.08
LINC00339-205ENST00000452322 ASAP1Q9ULH1 1129 aa15.55■□□□□ 0.08
LINC00339-205ENST00000452322 KDM3BQ7LBC6 1761 aa15.55■□□□□ 0.08
LINC00339-205ENST00000452322 UBR2Q8IWV8 1755 aa15.54■□□□□ 0.08
LINC00339-205ENST00000452322 ZNF521Q96K83 1311 aa15.53■□□□□ 0.08
LINC00339-205ENST00000452322 SLC39A6Q13433 755 aa15.53■□□□□ 0.08
LINC00339-205ENST00000452322 ZNF790Q6PG37 636 aa15.53■□□□□ 0.08
LINC00339-205ENST00000452322 WDR63Q8IWG1 891 aa15.53■□□□□ 0.08
LINC00339-205ENST00000452322 TTC5Q8N0Z6 440 aa15.53■□□□□ 0.08
LINC00339-205ENST00000452322 CFAP44Q96MT7 982 aa15.53■□□□□ 0.08
LINC00339-205ENST00000452322 KCPQ6ZWJ8 1503 aa15.53■□□□□ 0.08
LINC00339-205ENST00000452322 IL16Q14005 1332 aa15.53■□□□□ 0.08
LINC00339-205ENST00000452322 HNRNPUQ00839 825 aaKnown RBP eCLIP15.52■□□□□ 0.08
LINC00339-205ENST00000452322 DEFB132Q7Z7B7 95 aa15.52■□□□□ 0.08
LINC00339-205ENST00000452322 IFT57Q9NWB7 429 aa15.52■□□□□ 0.08
LINC00339-205ENST00000452322 ZNF831Q5JPB2 1677 aa15.51■□□□□ 0.07
LINC00339-205ENST00000452322 CHL1O00533 1208 aa15.51■□□□□ 0.07
LINC00339-205ENST00000452322 SOCS7O14512 581 aa15.51■□□□□ 0.07
LINC00339-205ENST00000452322 ZNF853P0CG23 659 aa15.51■□□□□ 0.07
LINC00339-205ENST00000452322 GNAI1P63096 354 aa15.51■□□□□ 0.07
LINC00339-205ENST00000452322 EN1Q05925 392 aaPredicted RBP15.51■□□□□ 0.07
LINC00339-205ENST00000452322 CAMKK2Q96RR4 588 aa15.51■□□□□ 0.07
LINC00339-205ENST00000452322 TSPYL4Q9UJ04 414 aa15.51■□□□□ 0.07
LINC00339-205ENST00000452322 RREB1Q92766 1687 aa15.51■□□□□ 0.07
LINC00339-205ENST00000452322 CICQ96RK0 1608 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-205ENST00000452322 LOC102724428A0A0B4J2F2 783 aa15.5■□□□□ 0.07
LINC00339-205ENST00000452322 SIK1P57059 783 aa15.5■□□□□ 0.07
LINC00339-205ENST00000452322 TXNRD1Q16881 649 aa15.5■□□□□ 0.07
LINC00339-205ENST00000452322 SLC27A3Q5K4L6 730 aa15.5■□□□□ 0.07
LINC00339-205ENST00000452322 MIS18AQ9NYP9 233 aa15.5■□□□□ 0.07
LINC00339-205ENST00000452322 KCNQ3O43525 872 aa15.49■□□□□ 0.07
LINC00339-205ENST00000452322 ADRA2BP18089 450 aa15.49■□□□□ 0.07
LINC00339-205ENST00000452322 EZH2Q15910 746 aaKnown RBP15.49■□□□□ 0.07
LINC00339-205ENST00000452322 LAS1LQ9Y4W2 734 aaKnown RBP15.49■□□□□ 0.07
LINC00339-205ENST00000452322 PTCD1O75127 700 aaKnown RBP15.49■□□□□ 0.07
LINC00339-205ENST00000452322 VSIG10Q8N0Z9 540 aa15.49■□□□□ 0.07
LINC00339-205ENST00000452322 PROM2Q8N271 834 aa15.49■□□□□ 0.07
LINC00339-205ENST00000452322 FMNL2Q96PY5 1086 aa15.49■□□□□ 0.07
LINC00339-205ENST00000452322 RBM42Q9BTD8 480 aaKnown RBP15.49■□□□□ 0.07
LINC00339-205ENST00000452322 CCNL1Q9UK58 526 aaPredicted RBP15.49■□□□□ 0.07
LINC00339-205ENST00000452322 ZBED9Q6R2W3 1325 aa15.48■□□□□ 0.07
LINC00339-205ENST00000452322 HEG1Q9ULI3 1381 aa15.48■□□□□ 0.07
LINC00339-205ENST00000452322 EIF4A1P60842 406 aaKnown RBP15.48■□□□□ 0.07
LINC00339-205ENST00000452322 GOLGA2Q08379 1002 aa15.48■□□□□ 0.07
LINC00339-205ENST00000452322 ZNF496Q96IT1 587 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-205ENST00000452322 SLC4A9Q96Q91 983 aa15.48■□□□□ 0.07
LINC00339-205ENST00000452322 MBIPQ9NS73 344 aa15.48■□□□□ 0.07
LINC00339-205ENST00000452322 TJP1Q07157 1748 aa15.47■□□□□ 0.07
LINC00339-205ENST00000452322 NUP188Q5SRE5 1749 aa15.47■□□□□ 0.07
LINC00339-205ENST00000452322 HMGB2P26583 209 aaKnown RBP15.47■□□□□ 0.07
LINC00339-205ENST00000452322 ATP6V1AP38606 617 aa15.47■□□□□ 0.07
LINC00339-205ENST00000452322 LRRC4BQ9NT99 713 aa15.47■□□□□ 0.07
LINC00339-205ENST00000452322 C5P01031 1676 aa15.46■□□□□ 0.07
LINC00339-205ENST00000452322 MYH16Q9H6N6 1097 aa15.46■□□□□ 0.07
LINC00339-205ENST00000452322 TAF1LQ8IZX4 1826 aa15.46■□□□□ 0.06
LINC00339-205ENST00000452322 E9PSI1 815 aa15.45■□□□□ 0.06
LINC00339-205ENST00000452322 COL5A3P25940 1745 aaPredicted RBP15.45■□□□□ 0.06
LINC00339-205ENST00000452322 ITPK1Q13572 414 aa15.45■□□□□ 0.06
LINC00339-205ENST00000452322 SPINK5Q9NQ38 1064 aaPredicted RBP15.45■□□□□ 0.06
LINC00339-205ENST00000452322 FANCIQ9NVI1 1328 aa15.45■□□□□ 0.06
LINC00339-205ENST00000452322 SNRPA1P09661 255 aaKnown RBP15.44■□□□□ 0.06
LINC00339-205ENST00000452322 KCNQ4P56696 695 aa15.44■□□□□ 0.06
LINC00339-205ENST00000452322 TSR2Q969E8 191 aaKnown RBP15.44■□□□□ 0.06
LINC00339-205ENST00000452322 TEX13AQ9BXU3 409 aaPredicted RBP15.44■□□□□ 0.06
LINC00339-205ENST00000452322 LAMB4A4D0S4 1761 aa15.43■□□□□ 0.06
LINC00339-205ENST00000452322 GIGYF1O75420 1035 aaPredicted RBP15.43■□□□□ 0.06
LINC00339-205ENST00000452322 SLFN5Q08AF3 891 aa15.43■□□□□ 0.06
LINC00339-205ENST00000452322 DNAJC10Q8IXB1 793 aa15.43■□□□□ 0.06
LINC00339-205ENST00000452322 C4BP0C0L5 1744 aa15.43■□□□□ 0.06
LINC00339-205ENST00000452322 LINC00116Q8NCU8 138 aa15.42■□□□□ 0.06
LINC00339-205ENST00000452322 HOXB7P09629 217 aa15.41■□□□□ 0.06
LINC00339-205ENST00000452322 CDCA7LQ96GN5 454 aa15.41■□□□□ 0.06
LINC00339-205ENST00000452322 CNTNAP4Q9C0A0 1308 aa15.41■□□□□ 0.06
LINC00339-205ENST00000452322 PRAMEF22A3QJZ6 481 aa15.4■□□□□ 0.06
LINC00339-205ENST00000452322 STARD3NLO95772 234 aa15.4■□□□□ 0.06
LINC00339-205ENST00000452322 CYP19A1P11511 503 aaPredicted RBP15.4■□□□□ 0.06
LINC00339-205ENST00000452322 KRT24Q2M2I5 525 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms