RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 LGR6Q9HBX8 967 aa15.21■□□□□ 0.02
SCN9A-204ENST00000452182 FAM182BQ5T319 152 aa15.2■□□□□ 0.02
SCN9A-204ENST00000452182 MCM10Q7L590 875 aa15.19■□□□□ 0.02
SCN9A-204ENST00000452182 WWC1Q8IX03 1113 aa15.19■□□□□ 0.02
SCN9A-204ENST00000452182 SLC52A2Q9HAB3 445 aa15.18■□□□□ 0.02
SCN9A-204ENST00000452182 CALD1Q05682 793 aaKnown RBP15.17■□□□□ 0.02
SCN9A-204ENST00000452182 DCTN1Q14203 1278 aa15.17■□□□□ 0.02
SCN9A-204ENST00000452182 ZNF521Q96K83 1311 aa15.17■□□□□ 0.02
SCN9A-204ENST00000452182 TEFQ10587 303 aa15.17■□□□□ 0.02
SCN9A-204ENST00000452182 PRIM1P49642 420 aaKnown RBP15.16■□□□□ 0.02
SCN9A-204ENST00000452182 CABP4P57796 275 aa15.16■□□□□ 0.02
SCN9A-204ENST00000452182 HNRNPUQ00839 825 aaKnown RBP eCLIP15.16■□□□□ 0.02
SCN9A-204ENST00000452182 WDR63Q8IWG1 891 aa15.16■□□□□ 0.02
SCN9A-204ENST00000452182 TMOD3Q9NYL9 352 aa15.16■□□□□ 0.02
SCN9A-204ENST00000452182 KAT6BQ8WYB5 2073 aa15.16■□□□□ 0.02
SCN9A-204ENST00000452182 NFATC2IPQ8NCF5 419 aa15.15■□□□□ 0.02
SCN9A-204ENST00000452182 ACSBG1Q96GR2 724 aa15.15■□□□□ 0.02
SCN9A-204ENST00000452182 THUMPD2Q9BTF0 503 aaKnown RBP15.15■□□□□ 0.02
SCN9A-204ENST00000452182 BCL11BQ9C0K0 894 aaPredicted RBP15.15■□□□□ 0.02
SCN9A-204ENST00000452182 BABAM1Q9NWV8 329 aa15.15■□□□□ 0.02
SCN9A-204ENST00000452182 IL16Q14005 1332 aa15.15■□□□□ 0.02
SCN9A-204ENST00000452182 SENP3-EIF4A1A0A087X0R7 540 aa15.14■□□□□ 0.01
SCN9A-204ENST00000452182 KCNQ2O43526 872 aa15.14■□□□□ 0.01
SCN9A-204ENST00000452182 TAF7Q15545 349 aaPredicted RBP15.14■□□□□ 0.01
SCN9A-204ENST00000452182 SALL2Q9Y467 1007 aaPredicted RBP15.14■□□□□ 0.01
SCN9A-204ENST00000452182 BTAF1O14981 1849 aa15.14■□□□□ 0.01
SCN9A-204ENST00000452182 PAPPAQ13219 1627 aa15.14■□□□□ 0.01
SCN9A-204ENST00000452182 PIGBQ92521 554 aa15.14■□□□□ 0.01
SCN9A-204ENST00000452182 SYTL4Q96C24 671 aaPredicted RBP15.14■□□□□ 0.01
SCN9A-204ENST00000452182 ZBED9Q6R2W3 1325 aa15.13■□□□□ 0.01
SCN9A-204ENST00000452182 TNS1Q9HBL0 1735 aaKnown RBP15.12■□□□□ 0.01
SCN9A-204ENST00000452182 KDM3BQ7LBC6 1761 aa15.12■□□□□ 0.01
SCN9A-204ENST00000452182 TRIM37O94972 964 aa15.12■□□□□ 0.01
SCN9A-204ENST00000452182 ZNF853P0CG23 659 aa15.12■□□□□ 0.01
SCN9A-204ENST00000452182 CFAP44Q96MT7 982 aa15.12■□□□□ 0.01
SCN9A-204ENST00000452182 IFT57Q9NWB7 429 aa15.12■□□□□ 0.01
SCN9A-204ENST00000452182 BTBD11A6QL63 1104 aa15.11■□□□□ 0.01
SCN9A-204ENST00000452182 CHL1O00533 1208 aa15.11■□□□□ 0.01
SCN9A-204ENST00000452182 GNAI1P63096 354 aa15.11■□□□□ 0.01
SCN9A-204ENST00000452182 RNF39Q9H2S5 420 aa15.11■□□□□ 0.01
SCN9A-204ENST00000452182 UBR2Q8IWV8 1755 aa15.11■□□□□ 0.01
SCN9A-204ENST00000452182 PTF1AQ7RTS3 328 aa15.1■□□□□ 0.01
SCN9A-204ENST00000452182 CCDC125Q86Z20 511 aa15.1■□□□□ 0.01
SCN9A-204ENST00000452182 RGPD3A6NKT7 1758 aaPredicted RBP15.1■□□□□ 0.01
SCN9A-204ENST00000452182 RGPD4Q7Z3J3 1758 aa15.1■□□□□ 0.01
SCN9A-204ENST00000452182 GOLGA2Q08379 1002 aa15.1■□□□□ 0.01
SCN9A-204ENST00000452182 ILDR2Q71H61 639 aa15.1■□□□□ 0.01
SCN9A-204ENST00000452182 ZNF790Q6PG37 636 aa15.09■□□□□ 0.01
SCN9A-204ENST00000452182 SMARCC1Q92922 1105 aaPredicted RBP15.09■□□□□ 0.01
SCN9A-204ENST00000452182 ATG3Q9NT62 314 aa15.09■□□□□ 0.01
SCN9A-204ENST00000452182 LY75O60449 1722 aa15.08■□□□□ 0.01
SCN9A-204ENST00000452182 ZNF831Q5JPB2 1677 aa15.08■□□□□ 0
SCN9A-204ENST00000452182 TSPYL4Q9UJ04 414 aa15.08■□□□□ 0
SCN9A-204ENST00000452182 ASAP1Q9ULH1 1129 aa15.08■□□□□ 0
SCN9A-204ENST00000452182 PLSCR1O15162 318 aa15.07■□□□□ 0
SCN9A-204ENST00000452182 KCPQ6ZWJ8 1503 aa15.07■□□□□ 0
SCN9A-204ENST00000452182 E9PSI1 815 aa15.06■□□□□ 0
SCN9A-204ENST00000452182 SLC39A6Q13433 755 aa15.06■□□□□ 0
SCN9A-204ENST00000452182 TTC5Q8N0Z6 440 aa15.06■□□□□ 0
SCN9A-204ENST00000452182 MYH16Q9H6N6 1097 aa15.06■□□□□ 0
SCN9A-204ENST00000452182 MBIPQ9NS73 344 aa15.06■□□□□ 0
SCN9A-204ENST00000452182 MIS18AQ9NYP9 233 aa15.06■□□□□ 0
SCN9A-204ENST00000452182 CICQ96RK0 1608 aaPredicted RBP15.06■□□□□ 0
SCN9A-204ENST00000452182 PALLDQ8WX93 1383 aa15.06■□□□□ 0
SCN9A-204ENST00000452182 SLFN5Q08AF3 891 aa15.06■□□□□ 0
SCN9A-204ENST00000452182 TRMT2AQ8IZ69 625 aaKnown RBP15.06■□□□□ 0
SCN9A-204ENST00000452182 SPINK5Q9NQ38 1064 aaPredicted RBP15.06■□□□□ 0
SCN9A-204ENST00000452182 LAS1LQ9Y4W2 734 aaKnown RBP15.06■□□□□ 0
SCN9A-204ENST00000452182 HEG1Q9ULI3 1381 aa15.05■□□□□ 0
SCN9A-204ENST00000452182 APBA3O96018 575 aa15.05■□□□□ -0
SCN9A-204ENST00000452182 VSIG10Q8N0Z9 540 aa15.05■□□□□ -0
SCN9A-204ENST00000452182 KCNQ3O43525 872 aa15.04■□□□□ -0
SCN9A-204ENST00000452182 EIF4A1P60842 406 aaKnown RBP15.04■□□□□ -0
SCN9A-204ENST00000452182 SF3B2Q13435 895 aaKnown RBP15.04■□□□□ -0
SCN9A-204ENST00000452182 FMNL2Q96PY5 1086 aa15.04■□□□□ -0
SCN9A-204ENST00000452182 FANCIQ9NVI1 1328 aa15.04■□□□□ -0
SCN9A-204ENST00000452182 POTEDQ86YR6 584 aa15.03■□□□□ -0
SCN9A-204ENST00000452182 UPF1Q92900 1129 aaKnown RBP eCLIP15.03■□□□□ -0
SCN9A-204ENST00000452182 CDCA7LQ96GN5 454 aa15.03■□□□□ -0
SCN9A-204ENST00000452182 ZNF496Q96IT1 587 aaPredicted RBP15.03■□□□□ -0
SCN9A-204ENST00000452182 YTHDC1Q96MU7 727 aaKnown RBP15.03■□□□□ -0
SCN9A-204ENST00000452182 LOC102724428A0A0B4J2F2 783 aa15.03■□□□□ -0
SCN9A-204ENST00000452182 SIK1P57059 783 aa15.03■□□□□ -0
SCN9A-204ENST00000452182 TSR2Q969E8 191 aaKnown RBP15.03■□□□□ -0
SCN9A-204ENST00000452182 PTCD1O75127 700 aaKnown RBP15.02□□□□□ -0.01
SCN9A-204ENST00000452182 BAG6P46379 1132 aa15.02□□□□□ -0.01
SCN9A-204ENST00000452182 SLC27A3Q5K4L6 730 aa15.02□□□□□ -0.01
SCN9A-204ENST00000452182 HMGB2P26583 209 aaKnown RBP15.01□□□□□ -0.01
SCN9A-204ENST00000452182 DUSP27Q5VZP5 1158 aa15.01□□□□□ -0.01
SCN9A-204ENST00000452182 SLC4A9Q96Q91 983 aa15.01□□□□□ -0.01
SCN9A-204ENST00000452182 SOS1Q07889 1333 aaPredicted RBP15.01□□□□□ -0.01
SCN9A-204ENST00000452182 TJP1Q07157 1748 aa15.01□□□□□ -0.01
SCN9A-204ENST00000452182 TAF1LQ8IZX4 1826 aa15□□□□□ -0.01
SCN9A-204ENST00000452182 LAMB4A4D0S4 1761 aa15□□□□□ -0.01
SCN9A-204ENST00000452182 GIGYF1O75420 1035 aaPredicted RBP15□□□□□ -0.01
SCN9A-204ENST00000452182 HOXB7P09629 217 aa15□□□□□ -0.01
SCN9A-204ENST00000452182 CAMKK2Q96RR4 588 aa15□□□□□ -0.01
SCN9A-204ENST00000452182 RBM42Q9BTD8 480 aaKnown RBP15□□□□□ -0.01
SCN9A-204ENST00000452182 COL5A3P25940 1745 aaPredicted RBP15□□□□□ -0.01
SCN9A-204ENST00000452182 C5P01031 1676 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms