RNA–Protein interactions for RNA: ENST00000452162.5

PKP4-206, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 2,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-206ENST00000452162 COG6Q9Y2V7 657 aa13.74□□□□□ -0.21
PKP4-206ENST00000452162 CYP27B1O15528 508 aa13.74□□□□□ -0.21
PKP4-206ENST00000452162 BCL2L13Q9BXK5 485 aa13.74□□□□□ -0.21
PKP4-206ENST00000452162 TNS1Q9HBL0 1735 aaKnown RBP13.73□□□□□ -0.21
PKP4-206ENST00000452162 RLBP1P12271 317 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 PTF1AQ7RTS3 328 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 BCL11AQ9H165 835 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 TNNQ9UQP3 1299 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 BCL9O00512 1426 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 NEFMP07197 916 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 PDE4AP27815 886 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 CLUAP1Q96AJ1 413 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 PCDH11XQ9BZA7 1347 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 PCDH11YQ9BZA8 1340 aa13.73□□□□□ -0.21
PKP4-206ENST00000452162 AAMPQ13685 434 aa13.72□□□□□ -0.21
PKP4-206ENST00000452162 ACSBG1Q96GR2 724 aa13.72□□□□□ -0.21
PKP4-206ENST00000452162 BACH2Q9BYV9 841 aa13.72□□□□□ -0.21
PKP4-206ENST00000452162 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.72□□□□□ -0.213e-8■■■□□ 17.3
PKP4-206ENST00000452162 SPG7Q9UQ90 795 aa13.72□□□□□ -0.21
PKP4-206ENST00000452162 DLG5Q8TDM6 1919 aa13.71□□□□□ -0.21
PKP4-206ENST00000452162 DOT1LQ8TEK3 1739 aa13.71□□□□□ -0.21
PKP4-206ENST00000452162 KCNQ2O43526 872 aa13.71□□□□□ -0.21
PKP4-206ENST00000452162 PLEKHO1Q53GL0 409 aaPredicted RBP13.71□□□□□ -0.22
PKP4-206ENST00000452162 CCDC125Q86Z20 511 aa13.71□□□□□ -0.22
PKP4-206ENST00000452162 ZKSCAN2Q63HK3 967 aa13.7□□□□□ -0.22
PKP4-206ENST00000452162 DEFB132Q7Z7B7 95 aa13.7□□□□□ -0.22
PKP4-206ENST00000452162 ANP32EQ9BTT0 268 aa13.7□□□□□ -0.22
PKP4-206ENST00000452162 NHSQ6T4R5 1651 aa13.7□□□□□ -0.22
PKP4-206ENST00000452162 IGHDP01880 384 aa13.69□□□□□ -0.22
PKP4-206ENST00000452162 SSH1Q8WYL5 1049 aa13.69□□□□□ -0.22
PKP4-206ENST00000452162 PLEKHG2Q9H7P9 1386 aa13.69□□□□□ -0.22
PKP4-206ENST00000452162 TOGARAM1Q9Y4F4 1720 aa13.69□□□□□ -0.22
PKP4-206ENST00000452162 PHKG2P15735 406 aa13.69□□□□□ -0.22
PKP4-206ENST00000452162 SF3B2Q13435 895 aaKnown RBP13.69□□□□□ -0.22
PKP4-206ENST00000452162 AMOTQ4VCS5 1084 aa13.69□□□□□ -0.22
PKP4-206ENST00000452162 ZNF530Q6P9A1 599 aaPredicted RBP13.69□□□□□ -0.22
PKP4-206ENST00000452162 IFNL2Q8IZJ0 200 aa13.69□□□□□ -0.22
PKP4-206ENST00000452162 SMC4Q9NTJ3 1288 aa13.69□□□□□ -0.22
PKP4-206ENST00000452162 CALD1Q05682 793 aaKnown RBP13.68□□□□□ -0.22
PKP4-206ENST00000452162 BCL11BQ9C0K0 894 aaPredicted RBP13.68□□□□□ -0.22
PKP4-206ENST00000452162 ITGB4P16144 1822 aa13.68□□□□□ -0.22
PKP4-206ENST00000452162 BTAF1O14981 1849 aa13.68□□□□□ -0.22
PKP4-206ENST00000452162 VIRMAQ69YN4 1812 aaKnown RBP13.68□□□□□ -0.22
PKP4-206ENST00000452162 APBA3O96018 575 aa13.67□□□□□ -0.22
PKP4-206ENST00000452162 ZNF853P0CG23 659 aa13.67□□□□□ -0.22
PKP4-206ENST00000452162 PRIM1P49642 420 aaKnown RBP13.67□□□□□ -0.22
PKP4-206ENST00000452162 MVPQ14764 893 aaKnown RBP13.67□□□□□ -0.22
PKP4-206ENST00000452162 NKX1-1Q15270 411 aaPredicted RBP13.67□□□□□ -0.22
PKP4-206ENST00000452162 MTHFSDQ2M296 383 aaKnown RBP13.67□□□□□ -0.22
PKP4-206ENST00000452162 EN1Q05925 392 aaPredicted RBP13.67□□□□□ -0.22
PKP4-206ENST00000452162 LMOD3Q0VAK6 560 aa13.67□□□□□ -0.22
PKP4-206ENST00000452162 DZIP1LQ8IYY4 767 aaKnown RBP13.67□□□□□ -0.22
PKP4-206ENST00000452162 SYTL4Q96C24 671 aaPredicted RBP13.67□□□□□ -0.22
PKP4-206ENST00000452162 THUMPD2Q9BTF0 503 aaKnown RBP13.67□□□□□ -0.22
PKP4-206ENST00000452162 IFT57Q9NWB7 429 aa13.67□□□□□ -0.22
PKP4-206ENST00000452162 ANP32AP39687 249 aaKnown RBP13.66□□□□□ -0.22
PKP4-206ENST00000452162 ALDH1L2Q3SY69 923 aa13.66□□□□□ -0.22
PKP4-206ENST00000452162 TRIM27P14373 513 aa13.66□□□□□ -0.22
PKP4-206ENST00000452162 BAG6P46379 1132 aa13.66□□□□□ -0.22
PKP4-206ENST00000452162 PCDHB15Q9Y5E8 787 aa13.66□□□□□ -0.22
PKP4-206ENST00000452162 GNAI1P63096 354 aa13.65□□□□□ -0.22
PKP4-206ENST00000452162 ZNF428Q96B54 188 aa13.65□□□□□ -0.22
PKP4-206ENST00000452162 KIF16BQ96L93 1317 aa13.65□□□□□ -0.22
PKP4-206ENST00000452162 C1orf141Q5JVX7 400 aa13.65□□□□□ -0.22
PKP4-206ENST00000452162 ATF7IPQ6VMQ6 1270 aa13.65□□□□□ -0.22
PKP4-206ENST00000452162 FTSJ3Q8IY81 847 aaKnown RBP13.65□□□□□ -0.22
PKP4-206ENST00000452162 SCN11AQ9UI33 1791 aa13.64□□□□□ -0.23
PKP4-206ENST00000452162 KDM6AO15550 1401 aaPredicted RBP13.64□□□□□ -0.23
PKP4-206ENST00000452162 BRPF1P55201 1214 aaPredicted RBP13.64□□□□□ -0.23
PKP4-206ENST00000452162 MPRIPQ6WCQ1 1025 aa13.64□□□□□ -0.23
PKP4-206ENST00000452162 NOB1Q9ULX3 412 aaKnown RBP13.64□□□□□ -0.23
PKP4-206ENST00000452162 EZH2Q15910 746 aaKnown RBP13.64□□□□□ -0.23
PKP4-206ENST00000452162 AKAP4Q5JQC9 854 aa13.64□□□□□ -0.23
PKP4-206ENST00000452162 IPO9Q96P70 1041 aaKnown RBP13.64□□□□□ -0.23
PKP4-206ENST00000452162 MBIPQ9NS73 344 aa13.64□□□□□ -0.23
PKP4-206ENST00000452162 LAS1LQ9Y4W2 734 aaKnown RBP13.64□□□□□ -0.23
PKP4-206ENST00000452162 CFAP44Q96MT7 982 aa13.63□□□□□ -0.23
PKP4-206ENST00000452162 CAMKK2Q96RR4 588 aa13.63□□□□□ -0.23
PKP4-206ENST00000452162 VAMP4O75379 141 aa13.63□□□□□ -0.23
PKP4-206ENST00000452162 HSP90AB1P08238 724 aaKnown RBP13.63□□□□□ -0.23
PKP4-206ENST00000452162 DCAF5Q96JK2 942 aa13.63□□□□□ -0.23
PKP4-206ENST00000452162 LGR6Q9HBX8 967 aa13.62□□□□□ -0.23
PKP4-206ENST00000452162 PLSCR1O15162 318 aa13.61□□□□□ -0.23
PKP4-206ENST00000452162 RGS3P49796 1198 aa13.61□□□□□ -0.23
PKP4-206ENST00000452162 C8orf34Q49A92 452 aa13.61□□□□□ -0.23
PKP4-206ENST00000452162 GAS2L2Q8NHY3 880 aa13.61□□□□□ -0.23
PKP4-206ENST00000452162 IPO8O15397 1037 aaKnown RBP13.61□□□□□ -0.23
PKP4-206ENST00000452162 FAM161AQ3B820 660 aa13.61□□□□□ -0.23
PKP4-206ENST00000452162 TSPYL6Q8N831 410 aa13.61□□□□□ -0.23
PKP4-206ENST00000452162 PIGBQ92521 554 aa13.61□□□□□ -0.23
PKP4-206ENST00000452162 RGPD3A6NKT7 1758 aaPredicted RBP13.61□□□□□ -0.23
PKP4-206ENST00000452162 RGPD4Q7Z3J3 1758 aa13.61□□□□□ -0.23
PKP4-206ENST00000452162 RREB1Q92766 1687 aa13.6□□□□□ -0.23
PKP4-206ENST00000452162 PROM2Q8N271 834 aa13.6□□□□□ -0.23
PKP4-206ENST00000452162 DDX19BQ9UMR2 479 aa13.6□□□□□ -0.23
PKP4-206ENST00000452162 NOP58Q9Y2X3 529 aaKnown RBP13.6□□□□□ -0.23
PKP4-206ENST00000452162 ADAMTS7Q9UKP4 1686 aa13.6□□□□□ -0.23
PKP4-206ENST00000452162 ERVV-2B6SEH9 535 aa13.6□□□□□ -0.23
PKP4-206ENST00000452162 MRPL50Q8N5N7 158 aaKnown RBP13.6□□□□□ -0.23
PKP4-206ENST00000452162 MAP3K5Q99683 1374 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms