RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	CGNL1	Q0VF96	1302 aa		11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	PLSCR1	O15162	318 aa		11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	ST18	O60284	1047 aa		11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	TNNT2	P45379	298 aa	Predicted RBP	11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	HSP90AB2P	Q58FF8	381 aa		11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	NBPF6	Q5VWK0	638 aa		11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	NBPF4	Q96M43	638 aa		11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	NUBP1	P53384	320 aa		11.97	□□□□□ -0.49
RFX3-209	ENST00000451859	TXNRD1	Q16881	649 aa		11.97	□□□□□ -0.49
RFX3-209	ENST00000451859	IFNL1	Q8IU54	200 aa		11.97	□□□□□ -0.49
RFX3-209	ENST00000451859	SYTL4	Q96C24	671 aa	Predicted RBP	11.97	□□□□□ -0.49
RFX3-209	ENST00000451859	LY75	O60449	1722 aa		11.97	□□□□□ -0.49
RFX3-209	ENST00000451859	INSR	P06213	1382 aa		11.96	□□□□□ -0.49
RFX3-209	ENST00000451859	PKD1L3	Q7Z443	1732 aa		11.96	□□□□□ -0.49
RFX3-209	ENST00000451859	TOGARAM1	Q9Y4F4	1720 aa		11.95	□□□□□ -0.5
RFX3-209	ENST00000451859	SLAIN1	Q8ND83	568 aa		11.95	□□□□□ -0.5
RFX3-209	ENST00000451859	RAPGEF4	Q8WZA2	1011 aa		11.95	□□□□□ -0.5
RFX3-209	ENST00000451859	PANK3	Q9H999	370 aa		11.95	□□□□□ -0.5
RFX3-209	ENST00000451859	PAPPA	Q13219	1627 aa		11.95	□□□□□ -0.5
RFX3-209	ENST00000451859	TAT	P17735	454 aa	Predicted RBP	11.94	□□□□□ -0.5
RFX3-209	ENST00000451859	ZCRB1	Q8TBF4	217 aa	Known RBP	11.94	□□□□□ -0.5
RFX3-209	ENST00000451859	STK32B	Q9NY57	414 aa		11.94	□□□□□ -0.5
RFX3-209	ENST00000451859	PDGFD	Q9GZP0	370 aa	Predicted RBP	11.93	□□□□□ -0.5
RFX3-209	ENST00000451859	VIRMA	Q69YN4	1812 aa	Known RBP	11.93	□□□□□ -0.5
RFX3-209	ENST00000451859	TAF1L	Q8IZX4	1826 aa		11.93	□□□□□ -0.5
RFX3-209	ENST00000451859	KIF24	Q5T7B8	1368 aa		11.92	□□□□□ -0.5
RFX3-209	ENST00000451859	QSER1	Q2KHR3	1735 aa		11.92	□□□□□ -0.5
RFX3-209	ENST00000451859	PRIM1	P49642	420 aa	Known RBP	11.92	□□□□□ -0.5
RFX3-209	ENST00000451859	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.92	□□□□□ -0.5
RFX3-209	ENST00000451859	ZBTB7A	O95365	584 aa		11.91	□□□□□ -0.5
RFX3-209	ENST00000451859	KCNQ4	P56696	695 aa		11.91	□□□□□ -0.5
RFX3-209	ENST00000451859	SPON1	Q9HCB6	807 aa		11.91	□□□□□ -0.5
RFX3-209	ENST00000451859	C5	P01031	1676 aa		11.91	□□□□□ -0.5
RFX3-209	ENST00000451859	IRX5	P78411	483 aa	Predicted RBP	11.9	□□□□□ -0.5
RFX3-209	ENST00000451859	SLC15A2	Q16348	729 aa		11.9	□□□□□ -0.5
RFX3-209	ENST00000451859	POLK	Q9UBT6	870 aa		11.9	□□□□□ -0.5
RFX3-209	ENST00000451859	NSD2	O96028	1365 aa		11.9	□□□□□ -0.5
RFX3-209	ENST00000451859	KIF7	Q2M1P5	1343 aa		11.89	□□□□□ -0.51
RFX3-209	ENST00000451859	WASHC2A	Q641Q2	1341 aa		11.89	□□□□□ -0.51
RFX3-209	ENST00000451859	PCDH11X	Q9BZA7	1347 aa		11.89	□□□□□ -0.51
RFX3-209	ENST00000451859	PCDH11Y	Q9BZA8	1340 aa		11.89	□□□□□ -0.51
RFX3-209	ENST00000451859	PLCD3	Q8N3E9	789 aa		11.89	□□□□□ -0.51
RFX3-209	ENST00000451859	TMEM106C	Q9BVX2	250 aa		11.89	□□□□□ -0.51
RFX3-209	ENST00000451859	LRRC4B	Q9NT99	713 aa		11.89	□□□□□ -0.51
RFX3-209	ENST00000451859	ZNF827	Q17R98	1081 aa		11.88	□□□□□ -0.51
RFX3-209	ENST00000451859	MORC1	Q86VD1	984 aa		11.88	□□□□□ -0.51
RFX3-209	ENST00000451859	EYA1	Q99502	592 aa		11.88	□□□□□ -0.51
RFX3-209	ENST00000451859	NCAPD2	Q15021	1401 aa		11.87	□□□□□ -0.51
RFX3-209	ENST00000451859	CNGB1	Q14028	1251 aa	Predicted RBP	11.87	□□□□□ -0.51
RFX3-209	ENST00000451859	EIF4A2	Q14240	407 aa	Known RBP	11.87	□□□□□ -0.51
RFX3-209	ENST00000451859	KNSTRN	Q9Y448	316 aa		11.87	□□□□□ -0.51
RFX3-209	ENST00000451859	CYP27B1	O15528	508 aa		11.86	□□□□□ -0.51
RFX3-209	ENST00000451859	MPRIP	Q6WCQ1	1025 aa		11.86	□□□□□ -0.51
RFX3-209	ENST00000451859	PLCG2	P16885	1265 aa		11.85	□□□□□ -0.51
RFX3-209	ENST00000451859	CCNL1	Q9UK58	526 aa	Predicted RBP	11.85	□□□□□ -0.51
RFX3-209	ENST00000451859	SPG7	Q9UQ90	795 aa		11.85	□□□□□ -0.51
RFX3-209	ENST00000451859	SLC27A3	Q5K4L6	730 aa		11.84	□□□□□ -0.51
RFX3-209	ENST00000451859	UBR3	Q6ZT12	1888 aa		11.84	□□□□□ -0.51
RFX3-209	ENST00000451859	C4B	P0C0L5	1744 aa		11.83	□□□□□ -0.52
RFX3-209	ENST00000451859	PTGER2	P43116	358 aa		11.83	□□□□□ -0.52
RFX3-209	ENST00000451859	CC2D1B	Q5T0F9	858 aa	Known RBP	11.83	□□□□□ -0.52
RFX3-209	ENST00000451859	MTFR1L	Q9H019	292 aa		11.83	□□□□□ -0.52
RFX3-209	ENST00000451859	TFCP2L1	Q9NZI6	479 aa		11.83	□□□□□ -0.52
RFX3-209	ENST00000451859	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.83	□□□□□ -0.52
RFX3-209	ENST00000451859	COL24A1	Q17RW2	1714 aa		11.83	□□□□□ -0.52
RFX3-209	ENST00000451859	SCN11A	Q9UI33	1791 aa		11.82	□□□□□ -0.52
RFX3-209	ENST00000451859	PALLD	Q8WX93	1383 aa		11.82	□□□□□ -0.52
RFX3-209	ENST00000451859	PNPLA7	Q6ZV29	1317 aa		11.82	□□□□□ -0.52
RFX3-209	ENST00000451859	IGSF1	Q8N6C5	1336 aa		11.82	□□□□□ -0.52
RFX3-209	ENST00000451859	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.81	□□□□□ -0.52
RFX3-209	ENST00000451859	AEBP1	Q8IUX7	1158 aa		11.81	□□□□□ -0.52
RFX3-209	ENST00000451859	KLHL34	Q8N239	644 aa		11.81	□□□□□ -0.52
RFX3-209	ENST00000451859	FAM212A	Q96EL1	285 aa		11.81	□□□□□ -0.52
RFX3-209	ENST00000451859	CHD4	Q14839	1912 aa		11.81	□□□□□ -0.52
RFX3-209	ENST00000451859	PHKG2	P15735	406 aa		11.8	□□□□□ -0.52
RFX3-209	ENST00000451859	MMRN1	Q13201	1228 aa		11.8	□□□□□ -0.52
RFX3-209	ENST00000451859	SPNS2	Q8IVW8	549 aa		11.8	□□□□□ -0.52
RFX3-209	ENST00000451859	IFNL2	Q8IZJ0	200 aa		11.8	□□□□□ -0.52
RFX3-209	ENST00000451859	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.8	□□□□□ -0.52
RFX3-209	ENST00000451859	TMOD3	Q9NYL9	352 aa		11.8	□□□□□ -0.52
RFX3-209	ENST00000451859	PIGB	Q92521	554 aa		11.79	□□□□□ -0.52
RFX3-209	ENST00000451859	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.79	□□□□□ -0.52	4e-6	■□□□□ 11.2
RFX3-209	ENST00000451859	COL5A3	P25940	1745 aa	Predicted RBP	11.78	□□□□□ -0.52
RFX3-209	ENST00000451859	MTHFS	P49914	203 aa		11.78	□□□□□ -0.52
RFX3-209	ENST00000451859	NKX1-1	Q15270	411 aa	Predicted RBP	11.78	□□□□□ -0.52
RFX3-209	ENST00000451859	SULT6B1	Q6IMI4	303 aa		11.78	□□□□□ -0.52
RFX3-209	ENST00000451859	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.78	□□□□□ -0.52
RFX3-209	ENST00000451859	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.78	□□□□□ -0.52
RFX3-209	ENST00000451859	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.77	□□□□□ -0.53
RFX3-209	ENST00000451859	MSL1	Q68DK7	614 aa		11.77	□□□□□ -0.53
RFX3-209	ENST00000451859	SMARCC1	Q92922	1105 aa	Predicted RBP	11.77	□□□□□ -0.53
RFX3-209	ENST00000451859	ARX	Q96QS3	562 aa		11.77	□□□□□ -0.53
RFX3-209	ENST00000451859	OCEL1	Q9H607	264 aa		11.77	□□□□□ -0.53
RFX3-209	ENST00000451859	ASAP1	Q9ULH1	1129 aa		11.77	□□□□□ -0.53
RFX3-209	ENST00000451859	KDM6A	O15550	1401 aa	Predicted RBP	11.77	□□□□□ -0.53
RFX3-209	ENST00000451859	PER1	O15534	1290 aa	Predicted RBP	11.76	□□□□□ -0.53
RFX3-209	ENST00000451859	POLD1	P28340	1107 aa		11.76	□□□□□ -0.53
RFX3-209	ENST00000451859	IL13	P35225	146 aa		11.76	□□□□□ -0.53
RFX3-209	ENST00000451859	SMIM5	Q71RC9	77 aa		11.76	□□□□□ -0.53

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