RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 SLC52A2Q9HAB3 445 aa19.08■□□□□ 0.64
COL3A1-203ENST00000450867 HTATSF1O43719 755 aaKnown RBP19.07■□□□□ 0.64
COL3A1-203ENST00000450867 NBPF14Q5TI25 921 aa19.07■□□□□ 0.64
COL3A1-203ENST00000450867 IL17REQ8NFR9 667 aa19.07■□□□□ 0.64
COL3A1-203ENST00000450867 ANO8Q9HCE9 1232 aaPredicted RBP19.07■□□□□ 0.64
COL3A1-203ENST00000450867 ATG3Q9NT62 314 aa19.07■□□□□ 0.64
COL3A1-203ENST00000450867 ASAP1Q9ULH1 1129 aa19.07■□□□□ 0.64
COL3A1-203ENST00000450867 C4BP0C0L5 1744 aa19.06■□□□□ 0.64
COL3A1-203ENST00000450867 TJP1Q07157 1748 aa19.06■□□□□ 0.64
COL3A1-203ENST00000450867 WDR43Q15061 677 aaKnown RBP eCLIP19.06■□□□□ 0.64
COL3A1-203ENST00000450867 NFATC2IPQ8NCF5 419 aa19.06■□□□□ 0.64
COL3A1-203ENST00000450867 UBR3Q6ZT12 1888 aa19.05■□□□□ 0.64
COL3A1-203ENST00000450867 NEFMP07197 916 aa19.05■□□□□ 0.64
COL3A1-203ENST00000450867 HMGB2P26583 209 aaKnown RBP19.05■□□□□ 0.64
COL3A1-203ENST00000450867 NFE2L2Q16236 605 aa19.05■□□□□ 0.64
COL3A1-203ENST00000450867 CCNL1Q9UK58 526 aaPredicted RBP19.05■□□□□ 0.64
COL3A1-203ENST00000450867 KCPQ6ZWJ8 1503 aa19.05■□□□□ 0.64
COL3A1-203ENST00000450867 CCDC184Q52MB2 194 aa19.04■□□□□ 0.64
COL3A1-203ENST00000450867 ADAMTS8Q9UP79 889 aa19.04■□□□□ 0.64
COL3A1-203ENST00000450867 MAPK8IP3Q9UPT6 1336 aa19.03■□□□□ 0.64
COL3A1-203ENST00000450867 LOC102724428A0A0B4J2F2 783 aa19.03■□□□□ 0.64
COL3A1-203ENST00000450867 SIK1P57059 783 aa19.03■□□□□ 0.64
COL3A1-203ENST00000450867 SLC15A2Q16348 729 aa19.03■□□□□ 0.64
COL3A1-203ENST00000450867 AKT1S1Q96B36 256 aa19.03■□□□□ 0.64
COL3A1-203ENST00000450867 LRP5O75197 1615 aa19.03■□□□□ 0.64
COL3A1-203ENST00000450867 KDM3BQ7LBC6 1761 aa19.02■□□□□ 0.64
COL3A1-203ENST00000450867 R3HDM1Q15032 1099 aaKnown RBP19.02■□□□□ 0.64
COL3A1-203ENST00000450867 COL24A1Q17RW2 1714 aa19.02■□□□□ 0.63
COL3A1-203ENST00000450867 MYH14Q7Z406 1995 aaKnown RBP19.01■□□□□ 0.63
COL3A1-203ENST00000450867 RUNDC1Q96C34 613 aa19.01■□□□□ 0.63
COL3A1-203ENST00000450867 STK32BQ9NY57 414 aa19.01■□□□□ 0.63
COL3A1-203ENST00000450867 TEFQ10587 303 aa19■□□□□ 0.63
COL3A1-203ENST00000450867 ZNF827Q17R98 1081 aa19■□□□□ 0.63
COL3A1-203ENST00000450867 PNISRQ8TF01 805 aaKnown RBP19■□□□□ 0.63
COL3A1-203ENST00000450867 SLC4A9Q96Q91 983 aa19■□□□□ 0.63
COL3A1-203ENST00000450867 PSDA5PKW4 1024 aaPredicted RBP18.99■□□□□ 0.63
COL3A1-203ENST00000450867 KCNQ4P56696 695 aa18.99■□□□□ 0.63
COL3A1-203ENST00000450867 RTF1Q92541 710 aaKnown RBP18.99■□□□□ 0.63
COL3A1-203ENST00000450867 TMPOP42166 694 aaKnown RBP18.98■□□□□ 0.63
COL3A1-203ENST00000450867 MRS2Q9HD23 443 aa18.98■□□□□ 0.63
COL3A1-203ENST00000450867 ITPK1Q13572 414 aa18.97■□□□□ 0.63
COL3A1-203ENST00000450867 MCM10Q7L590 875 aa18.97■□□□□ 0.63
COL3A1-203ENST00000450867 ATP6V1AP38606 617 aa18.96■□□□□ 0.63
COL3A1-203ENST00000450867 CCDC146Q8IYE0 955 aa18.96■□□□□ 0.63
COL3A1-203ENST00000450867 DCTN1Q14203 1278 aa18.95■□□□□ 0.62
COL3A1-203ENST00000450867 ZNF790Q6PG37 636 aa18.95■□□□□ 0.62
COL3A1-203ENST00000450867 VSIG10Q8N0Z9 540 aa18.95■□□□□ 0.62
COL3A1-203ENST00000450867 LINC00116Q8NCU8 138 aa18.95■□□□□ 0.62
COL3A1-203ENST00000450867 RBM42Q9BTD8 480 aaKnown RBP18.95■□□□□ 0.62
COL3A1-203ENST00000450867 RIPK4P57078 832 aa18.94■□□□□ 0.62
COL3A1-203ENST00000450867 LMOD3Q0VAK6 560 aa18.94■□□□□ 0.62
COL3A1-203ENST00000450867 SLC39A6Q13433 755 aa18.94■□□□□ 0.62
COL3A1-203ENST00000450867 PNPLA7Q6ZV29 1317 aa18.94■□□□□ 0.62
COL3A1-203ENST00000450867 CNTNAP4Q9C0A0 1308 aa18.94■□□□□ 0.62
COL3A1-203ENST00000450867 PTCD1O75127 700 aaKnown RBP18.93■□□□□ 0.62
COL3A1-203ENST00000450867 TAF7Q15545 349 aaPredicted RBP18.93■□□□□ 0.62
COL3A1-203ENST00000450867 RC3H1Q5TC82 1133 aaKnown RBP18.93■□□□□ 0.62
COL3A1-203ENST00000450867 SRCAPQ6ZRS2 3230 aa18.93■□□□□ 0.62
COL3A1-203ENST00000450867 LAMB4A4D0S4 1761 aa18.93■□□□□ 0.62
COL3A1-203ENST00000450867 C4AP0C0L4 1744 aa18.92■□□□□ 0.62
COL3A1-203ENST00000450867 BTBD11A6QL63 1104 aa18.92■□□□□ 0.62
COL3A1-203ENST00000450867 TTC5Q8N0Z6 440 aa18.91■□□□□ 0.62
COL3A1-203ENST00000450867 TFCP2L1Q9NZI6 479 aa18.91■□□□□ 0.62
COL3A1-203ENST00000450867 TRIM35Q9UPQ4 493 aa18.91■□□□□ 0.62
COL3A1-203ENST00000450867 HEG1Q9ULI3 1381 aa18.91■□□□□ 0.62
COL3A1-203ENST00000450867 NCBP3Q53F19 620 aaKnown RBP18.9■□□□□ 0.62
COL3A1-203ENST00000450867 FLAD1Q8NFF5 587 aa18.9■□□□□ 0.62
COL3A1-203ENST00000450867 ZNF496Q96IT1 587 aaPredicted RBP18.9■□□□□ 0.62
COL3A1-203ENST00000450867 PDGFDQ9GZP0 370 aaPredicted RBP18.9■□□□□ 0.62
COL3A1-203ENST00000450867 BABAM1Q9NWV8 329 aa18.9■□□□□ 0.62
COL3A1-203ENST00000450867 CCER2I3L3R5 266 aa18.89■□□□□ 0.61
COL3A1-203ENST00000450867 SSFA2P28290 1259 aa18.89■□□□□ 0.61
COL3A1-203ENST00000450867 SLC16A10Q8TF71 515 aa18.89■□□□□ 0.61
COL3A1-203ENST00000450867 AK7Q96M32 723 aa18.89■□□□□ 0.61
COL3A1-203ENST00000450867 RRP7AQ9Y3A4 280 aaKnown RBP18.89■□□□□ 0.61
COL3A1-203ENST00000450867 APAF1O14727 1248 aa18.88■□□□□ 0.61
COL3A1-203ENST00000450867 FMNL2Q96PY5 1086 aa18.88■□□□□ 0.61
COL3A1-203ENST00000450867 THUMPD2Q9BTF0 503 aaKnown RBP18.88■□□□□ 0.61
COL3A1-203ENST00000450867 KCNQ3O43525 872 aa18.87■□□□□ 0.61
COL3A1-203ENST00000450867 CYP19A1P11511 503 aaPredicted RBP18.87■□□□□ 0.61
COL3A1-203ENST00000450867 AMIGO3Q86WK7 504 aa18.87■□□□□ 0.61
COL3A1-203ENST00000450867 DNAJC10Q8IXB1 793 aa18.87■□□□□ 0.61
COL3A1-203ENST00000450867 CRKLP46109 303 aaKnown RBP18.86■□□□□ 0.61
COL3A1-203ENST00000450867 DIEXFQ68CQ4 756 aaKnown RBP18.86■□□□□ 0.61
COL3A1-203ENST00000450867 COL23A1Q86Y22 540 aaPredicted RBP18.86■□□□□ 0.61
COL3A1-203ENST00000450867 TEX13AQ9BXU3 409 aaPredicted RBP18.86■□□□□ 0.61
COL3A1-203ENST00000450867 MTFR1LQ9H019 292 aa18.86■□□□□ 0.61
COL3A1-203ENST00000450867 GNPATO15228 680 aa18.85■□□□□ 0.61
COL3A1-203ENST00000450867 RPS6KA4O75676 772 aa18.85■□□□□ 0.61
COL3A1-203ENST00000450867 ADRA2BP18089 450 aa18.85■□□□□ 0.61
COL3A1-203ENST00000450867 NEUROD2Q15784 382 aa18.85■□□□□ 0.61
COL3A1-203ENST00000450867 CCDC27Q2M243 656 aa18.85■□□□□ 0.61
COL3A1-203ENST00000450867 INTS5Q6P9B9 1019 aaKnown RBP18.85■□□□□ 0.61
COL3A1-203ENST00000450867 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.84■□□□□ 0.61
COL3A1-203ENST00000450867 SGIP1Q9BQI5 828 aa18.84■□□□□ 0.61
COL3A1-203ENST00000450867 SPON1Q9HCB6 807 aa18.84■□□□□ 0.61
COL3A1-203ENST00000450867 CCDC87Q9NVE4 849 aa18.84■□□□□ 0.61
COL3A1-203ENST00000450867 RTCBQ9Y3I0 505 aaKnown RBP18.83■□□□□ 0.6
COL3A1-203ENST00000450867 CHL1O00533 1208 aa18.82■□□□□ 0.6
COL3A1-203ENST00000450867 STARD3NLO95772 234 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms