RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 IRF5Q13568 498 aa9.61□□□□□ -0.87
USP49-205ENST00000448078 SLFNL1Q499Z3 407 aa9.61□□□□□ -0.87
USP49-205ENST00000448078 C6orf118Q5T5N4 469 aa9.61□□□□□ -0.87
USP49-205ENST00000448078 CRIPAKQ8N1N5 446 aa9.61□□□□□ -0.87
USP49-205ENST00000448078 CLUAP1Q96AJ1 413 aa9.61□□□□□ -0.87
USP49-205ENST00000448078 ATP13A2Q9NQ11 1180 aa9.61□□□□□ -0.87
USP49-205ENST00000448078 PTPRTO14522 1441 aa9.61□□□□□ -0.87
USP49-205ENST00000448078 C11orf95C9JLR9 678 aaPredicted RBP9.6□□□□□ -0.87
USP49-205ENST00000448078 BMP2P12643 396 aa9.6□□□□□ -0.87
USP49-205ENST00000448078 SENP2Q9HC62 589 aa9.6□□□□□ -0.87
USP49-205ENST00000448078 TMPRSS4Q9NRS4 437 aa9.6□□□□□ -0.87
USP49-205ENST00000448078 DACH1Q9UI36 760 aa9.6□□□□□ -0.87
USP49-205ENST00000448078 ATP10AO60312 1499 aa9.59□□□□□ -0.87
USP49-205ENST00000448078 SPATA31D1Q6ZQQ2 1576 aa9.59□□□□□ -0.87
USP49-205ENST00000448078 ERVH48-1M5A8F1 160 aa9.59□□□□□ -0.87
USP49-205ENST00000448078 SEPT12Q8IYM1 358 aa9.59□□□□□ -0.87
USP49-205ENST00000448078 CYLDQ9NQC7 956 aa9.59□□□□□ -0.87
USP49-205ENST00000448078 PCDHB11Q9Y5F2 797 aa9.59□□□□□ -0.87
USP49-205ENST00000448078 GTF3C3Q9Y5Q9 886 aa9.59□□□□□ -0.87
USP49-205ENST00000448078 EFCAB5A4FU69 1503 aa9.59□□□□□ -0.87
USP49-205ENST00000448078 SCAPERQ9BY12 1400 aa9.58□□□□□ -0.88
USP49-205ENST00000448078 ZFYVE16Q7Z3T8 1539 aa9.58□□□□□ -0.88
USP49-205ENST00000448078 SETD1BQ9UPS6 1966 aaKnown RBP9.58□□□□□ -0.88
USP49-205ENST00000448078 GPR37L1O60883 481 aa9.58□□□□□ -0.88
USP49-205ENST00000448078 PURBQ96QR8 312 aaKnown RBP9.58□□□□□ -0.88
USP49-205ENST00000448078 GMPR2Q9P2T1 348 aaKnown RBP9.58□□□□□ -0.88
USP49-205ENST00000448078 LCE2BO14633 110 aa9.57□□□□□ -0.88
USP49-205ENST00000448078 TOM1O60784 492 aa9.57□□□□□ -0.88
USP49-205ENST00000448078 SOX11P35716 441 aa9.57□□□□□ -0.88
USP49-205ENST00000448078 CBLBQ13191 982 aa9.57□□□□□ -0.88
USP49-205ENST00000448078 MRPL14Q6P1L8 145 aaKnown RBP9.57□□□□□ -0.88
USP49-205ENST00000448078 PROSER2Q86WR7 435 aaPredicted RBP9.57□□□□□ -0.88
USP49-205ENST00000448078 RNF135Q8IUD6 432 aa9.57□□□□□ -0.88
USP49-205ENST00000448078 ZNF784Q8NCA9 323 aaPredicted RBP9.57□□□□□ -0.88
USP49-205ENST00000448078 ARHGEF40Q8TER5 1519 aa9.56□□□□□ -0.88
USP49-205ENST00000448078 IQSEC2Q5JU85 1478 aa9.56□□□□□ -0.88
USP49-205ENST00000448078 KIFC2Q96AC6 838 aa9.56□□□□□ -0.88
USP49-205ENST00000448078 CEP126Q9P2H0 1117 aa9.56□□□□□ -0.88
USP49-205ENST00000448078 CFAP74Q9C0B2 1584 aa9.55□□□□□ -0.88
USP49-205ENST00000448078 MYCP01106 439 aaPredicted RBP9.55□□□□□ -0.88
USP49-205ENST00000448078 RELBQ01201 579 aa9.55□□□□□ -0.88
USP49-205ENST00000448078 TSEN34Q9BSV6 310 aaKnown RBP9.55□□□□□ -0.88
USP49-205ENST00000448078 C9orf84Q5VXU9 1444 aa9.55□□□□□ -0.88
USP49-205ENST00000448078 CTTNBP2Q8WZ74 1663 aa9.55□□□□□ -0.88
USP49-205ENST00000448078 ESPNB1AK53 854 aa9.54□□□□□ -0.88
USP49-205ENST00000448078 CCDC125Q86Z20 511 aa9.54□□□□□ -0.88
USP49-205ENST00000448078 LINC00528Q8N1L1 170 aa9.54□□□□□ -0.88
USP49-205ENST00000448078 ZFP42Q96MM3 310 aa9.54□□□□□ -0.88
USP49-205ENST00000448078 DOLKQ9UPQ8 538 aa9.54□□□□□ -0.88
USP49-205ENST00000448078 TRAPPC8Q9Y2L5 1435 aa9.54□□□□□ -0.88
USP49-205ENST00000448078 PRXQ9BXM0 1461 aa9.53□□□□□ -0.88
USP49-205ENST00000448078 OXLD1Q5BKU9 147 aa9.53□□□□□ -0.88
USP49-205ENST00000448078 MEIOBQ8N635 442 aa9.53□□□□□ -0.88
USP49-205ENST00000448078 AGBL1Q96MI9 1066 aa9.53□□□□□ -0.88
USP49-205ENST00000448078 KLF16Q9BXK1 252 aaPredicted RBP9.53□□□□□ -0.88
USP49-205ENST00000448078 PLCH2O75038 1416 aa9.53□□□□□ -0.88
USP49-205ENST00000448078 TRIM46Q7Z4K8 759 aa9.52□□□□□ -0.89
USP49-205ENST00000448078 AFAP1Q8N556 730 aa9.52□□□□□ -0.89
USP49-205ENST00000448078 RAPGEF6Q8TEU7 1601 aa9.52□□□□□ -0.89
USP49-205ENST00000448078 ZMYM4Q5VZL5 1548 aa9.51□□□□□ -0.89
USP49-205ENST00000448078 FRMPD1Q5SYB0 1578 aa9.51□□□□□ -0.89
USP49-205ENST00000448078 TTC37Q6PGP7 1564 aa9.51□□□□□ -0.89
USP49-205ENST00000448078 POTECB2RU33 542 aa9.51□□□□□ -0.89
USP49-205ENST00000448078 MAN1A2O60476 641 aa9.51□□□□□ -0.89
USP49-205ENST00000448078 PIP4K2BP78356 416 aa9.51□□□□□ -0.89
USP49-205ENST00000448078 CC2D2BQ6DHV5 1058 aa9.51□□□□□ -0.89
USP49-205ENST00000448078 ZNF395Q9H8N7 513 aaPredicted RBP9.51□□□□□ -0.89
USP49-205ENST00000448078 POLMQ9NP87 494 aaPredicted RBP9.51□□□□□ -0.89
USP49-205ENST00000448078 PREX1Q8TCU6 1659 aa9.51□□□□□ -0.89
USP49-205ENST00000448078 POM121CA8CG34 1229 aa9.5□□□□□ -0.89
USP49-205ENST00000448078 ARHGEF12Q9NZN5 1544 aa9.5□□□□□ -0.89
USP49-205ENST00000448078 FER1L4A9Z1Z3 1794 aa9.5□□□□□ -0.89
USP49-205ENST00000448078 CNTLNQ9NXG0 1405 aa9.49□□□□□ -0.89
USP49-205ENST00000448078 NUP153P49790 1475 aaKnown RBP9.49□□□□□ -0.89
USP49-205ENST00000448078 ADH1AP07327 375 aa9.49□□□□□ -0.89
USP49-205ENST00000448078 SKIP12755 728 aa9.49□□□□□ -0.89
USP49-205ENST00000448078 HDGFL1Q5TGJ6 251 aa9.49□□□□□ -0.89
USP49-205ENST00000448078 TRIM47Q96LD4 638 aa9.49□□□□□ -0.89
USP49-205ENST00000448078 RICTORQ6R327 1708 aa9.48□□□□□ -0.89
USP49-205ENST00000448078 ATP5J2-PTCD1G3V325 749 aa9.48□□□□□ -0.89
USP49-205ENST00000448078 MEN1O00255 615 aa9.48□□□□□ -0.89
USP49-205ENST00000448078 USP4Q13107 963 aa9.48□□□□□ -0.89
USP49-205ENST00000448078 CYP2U1Q7Z449 544 aa9.48□□□□□ -0.89
USP49-205ENST00000448078 SIRT1Q96EB6 747 aa9.48□□□□□ -0.89
USP49-205ENST00000448078 CALR3Q96L12 384 aaKnown RBP9.48□□□□□ -0.89
USP49-205ENST00000448078 HECW1Q76N89 1606 aa9.48□□□□□ -0.89
USP49-205ENST00000448078 ZNF518AQ6AHZ1 1483 aa9.47□□□□□ -0.89
USP49-205ENST00000448078 SNRPBP14678 240 aaKnown RBP9.47□□□□□ -0.89
USP49-205ENST00000448078 HSPA1LP34931 641 aa9.47□□□□□ -0.89
USP49-205ENST00000448078 Q6ZVU0 165 aa9.47□□□□□ -0.89
USP49-205ENST00000448078 C14orf37Q86TY3 774 aa9.47□□□□□ -0.89
USP49-205ENST00000448078 NLRP3Q96P20 1036 aa9.47□□□□□ -0.89
USP49-205ENST00000448078 ZNF335Q9H4Z2 1342 aaPredicted RBP9.47□□□□□ -0.89
USP49-205ENST00000448078 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.46□□□□□ -0.89
USP49-205ENST00000448078 A6NJR5 290 aa9.46□□□□□ -0.9
USP49-205ENST00000448078 PLPP7Q8NBV4 271 aa9.46□□□□□ -0.9
USP49-205ENST00000448078 CCDC85AQ96PX6 553 aaPredicted RBP9.46□□□□□ -0.9
USP49-205ENST00000448078 FIGNL2A6NMB9 653 aa9.45□□□□□ -0.9
USP49-205ENST00000448078 TTLL8A6PVC2 850 aa9.45□□□□□ -0.9
USP49-205ENST00000448078 LILRA1O75019 489 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms