RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 SBNO1A3KN83 1393 aa23.31■■□□□ 1.32
SDCBP-204ENST00000447182 TNRQ92752 1358 aa23.31■■□□□ 1.32
SDCBP-204ENST00000447182 FOXO3O43524 673 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 CYB5RLQ6IPT4 315 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 TMX3Q96JJ7 454 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 LRRCC1Q9C099 1032 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 RBSNQ9H1K0 784 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 FLT4P35916 1363 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 LRRC37A3O60309 1634 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 TPM2P07951 284 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 NEK4P51957 841 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 CUL4AQ13619 759 aa23.3■■□□□ 1.32
SDCBP-204ENST00000447182 CACNA1FO60840 1977 aa23.29■■□□□ 1.32
SDCBP-204ENST00000447182 HTATSF1O43719 755 aaKnown RBP23.29■■□□□ 1.32
SDCBP-204ENST00000447182 GNAI3P08754 354 aa23.29■■□□□ 1.32
SDCBP-204ENST00000447182 STK31Q9BXU1 1019 aa23.29■■□□□ 1.32
SDCBP-204ENST00000447182 XRN1Q8IZH2 1706 aaKnown RBP23.29■■□□□ 1.32
SDCBP-204ENST00000447182 RIMS1Q86UR5 1692 aaKnown RBP23.29■■□□□ 1.32
SDCBP-204ENST00000447182 N4BP2Q86UW6 1770 aaPredicted RBP23.29■■□□□ 1.32
SDCBP-204ENST00000447182 PRIM1P49642 420 aaKnown RBP23.29■■□□□ 1.32
SDCBP-204ENST00000447182 ESF1Q9H501 851 aaKnown RBP23.29■■□□□ 1.32
SDCBP-204ENST00000447182 EXOC6BQ9Y2D4 811 aa23.29■■□□□ 1.32
SDCBP-204ENST00000447182 FAM208AQ9UK61 1670 aaKnown RBP23.28■■□□□ 1.32
SDCBP-204ENST00000447182 MX1P20591 662 aa23.28■■□□□ 1.32
SDCBP-204ENST00000447182 MCCP23508 829 aa23.28■■□□□ 1.32
SDCBP-204ENST00000447182 INTS4Q96HW7 963 aaKnown RBP23.28■■□□□ 1.32
SDCBP-204ENST00000447182 STAP2Q9UGK3 403 aa23.28■■□□□ 1.32
SDCBP-204ENST00000447182 ATP8B2P98198 1209 aa23.27■■□□□ 1.32
SDCBP-204ENST00000447182 IGSF1Q8N6C5 1336 aa23.27■■□□□ 1.32
SDCBP-204ENST00000447182 BRD1O95696 1058 aa23.27■■□□□ 1.32
SDCBP-204ENST00000447182 MSNP26038 577 aaKnown RBP23.27■■□□□ 1.32
SDCBP-204ENST00000447182 LRSAM1Q6UWE0 723 aa23.27■■□□□ 1.32
SDCBP-204ENST00000447182 SRCIN1Q9C0H9 1055 aa23.27■■□□□ 1.32
SDCBP-204ENST00000447182 SOS1Q07889 1333 aaPredicted RBP23.27■■□□□ 1.32
SDCBP-204ENST00000447182 MBD3O95983 291 aa23.26■■□□□ 1.31
SDCBP-204ENST00000447182 FLIIQ13045 1269 aa23.26■■□□□ 1.31
SDCBP-204ENST00000447182 PLEKHG1Q9ULL1 1385 aa23.26■■□□□ 1.31
SDCBP-204ENST00000447182 EPB41L2O43491 1005 aaKnown RBP23.26■■□□□ 1.31
SDCBP-204ENST00000447182 OFD1O75665 1012 aa23.26■■□□□ 1.31
SDCBP-204ENST00000447182 CHMLP26374 656 aa23.26■■□□□ 1.31
SDCBP-204ENST00000447182 CCDC30Q5VVM6 783 aa23.26■■□□□ 1.31
SDCBP-204ENST00000447182 HSP90AA2PQ14568 343 aaPredicted RBP23.25■■□□□ 1.31
SDCBP-204ENST00000447182 TMEM63CQ9P1W3 806 aa23.25■■□□□ 1.31
SDCBP-204ENST00000447182 CEP170BQ9Y4F5 1589 aaPredicted RBP23.25■■□□□ 1.31
SDCBP-204ENST00000447182 AOX1Q06278 1338 aa23.24■■□□□ 1.31
SDCBP-204ENST00000447182 RBM27Q9P2N5 1060 aaKnown RBP23.24■■□□□ 1.31
SDCBP-204ENST00000447182 NOL7Q9UMY1 257 aaKnown RBP23.24■■□□□ 1.31
SDCBP-204ENST00000447182 PXDNLA1KZ92 1463 aa23.24■■□□□ 1.31
SDCBP-204ENST00000447182 PTPRUQ92729 1446 aa23.24■■□□□ 1.31
SDCBP-204ENST00000447182 PNMA6EA0A0J9YXQ4 647 aa23.24■■□□□ 1.31
SDCBP-204ENST00000447182 EYA1Q99502 592 aa23.23■■□□□ 1.31
SDCBP-204ENST00000447182 TSHZ3Q63HK5 1081 aa23.23■■□□□ 1.31
SDCBP-204ENST00000447182 TERF1P54274 439 aa23.22■■□□□ 1.31
SDCBP-204ENST00000447182 FKBP5Q13451 457 aaPredicted RBP23.22■■□□□ 1.31
SDCBP-204ENST00000447182 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.22■■□□□ 1.31
SDCBP-204ENST00000447182 PALD1Q9ULE6 856 aa23.22■■□□□ 1.31
SDCBP-204ENST00000447182 NUTM2FA1L443 756 aa23.21■■□□□ 1.31
SDCBP-204ENST00000447182 ZNF500O60304 480 aaPredicted RBP23.21■■□□□ 1.31
SDCBP-204ENST00000447182 BABAM1Q9NWV8 329 aa23.21■■□□□ 1.31
SDCBP-204ENST00000447182 SOX12O15370 315 aa23.2■■□□□ 1.3
SDCBP-204ENST00000447182 KIAA1211Q6ZU35 1233 aa23.2■■□□□ 1.3
SDCBP-204ENST00000447182 ANO2Q9NQ90 1003 aa23.2■■□□□ 1.3
SDCBP-204ENST00000447182 NSFL1CQ9UNZ2 370 aaKnown RBP23.2■■□□□ 1.3
SDCBP-204ENST00000447182 SYCE3A1L190 88 aa23.19■■□□□ 1.3
SDCBP-204ENST00000447182 CHAMP1Q96JM3 812 aa23.19■■□□□ 1.3
SDCBP-204ENST00000447182 GNAT3A8MTJ3 354 aa23.18■■□□□ 1.3
SDCBP-204ENST00000447182 TRIM6-TRIM34B2RNG4 842 aa23.18■■□□□ 1.3
SDCBP-204ENST00000447182 GLIPR1L2Q4G1C9 344 aa23.18■■□□□ 1.3
SDCBP-204ENST00000447182 RILPL2Q969X0 211 aa23.18■■□□□ 1.3
SDCBP-204ENST00000447182 AMPHP49418 695 aa23.18■■□□□ 1.3
SDCBP-204ENST00000447182 MCM5P33992 734 aa23.17■■□□□ 1.3
SDCBP-204ENST00000447182 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.17■■□□□ 1.3
SDCBP-204ENST00000447182 LRRFIP2Q9Y608 721 aaKnown RBP23.17■■□□□ 1.3
SDCBP-204ENST00000447182 PIK3C2AO00443 1686 aa23.17■■□□□ 1.3
SDCBP-204ENST00000447182 LTKP29376 864 aa23.17■■□□□ 1.3
SDCBP-204ENST00000447182 SSH3Q8TE77 659 aa23.16■■□□□ 1.3
SDCBP-204ENST00000447182 USP44Q9H0E7 712 aa23.16■■□□□ 1.3
SDCBP-204ENST00000447182 FOXD4L5Q5VV16 416 aaPredicted RBP23.15■■□□□ 1.3
SDCBP-204ENST00000447182 UNC5CLQ8IV45 518 aa23.15■■□□□ 1.3
SDCBP-204ENST00000447182 FOXD4L4Q8WXT5 416 aaPredicted RBP23.15■■□□□ 1.3
SDCBP-204ENST00000447182 ZKSCAN5Q9Y2L8 839 aa23.15■■□□□ 1.3
SDCBP-204ENST00000447182 RAB11FIP3O75154 756 aa23.14■■□□□ 1.3
SDCBP-204ENST00000447182 HSPA4P34932 840 aa23.14■■□□□ 1.3
SDCBP-204ENST00000447182 SYAP1Q96A49 352 aaPredicted RBP23.14■■□□□ 1.3
SDCBP-204ENST00000447182 NWD1Q149M9 1564 aa23.14■■□□□ 1.29
SDCBP-204ENST00000447182 PLEKHG5O94827 1062 aa23.14■■□□□ 1.29
SDCBP-204ENST00000447182 UBTFL1P0CB47 393 aaPredicted RBP23.14■■□□□ 1.29
SDCBP-204ENST00000447182 MAP3K5Q99683 1374 aa23.13■■□□□ 1.29
SDCBP-204ENST00000447182 TAF7Q15545 349 aaPredicted RBP23.12■■□□□ 1.29
SDCBP-204ENST00000447182 CCDC39Q9UFE4 941 aa23.12■■□□□ 1.29
SDCBP-204ENST00000447182 IL17REQ8NFR9 667 aa23.12■■□□□ 1.29
SDCBP-204ENST00000447182 WDR33Q9C0J8 1336 aaKnown RBP23.12■■□□□ 1.29
SDCBP-204ENST00000447182 DIP2AQ14689 1571 aa23.12■■□□□ 1.29
SDCBP-204ENST00000447182 POLA2Q14181 598 aa23.11■■□□□ 1.29
SDCBP-204ENST00000447182 NGDNQ8NEJ9 315 aaKnown RBP23.11■■□□□ 1.29
SDCBP-204ENST00000447182 RGPD8O14715 1765 aaPredicted RBP23.11■■□□□ 1.29
SDCBP-204ENST00000447182 USP54Q70EL1 1684 aa23.11■■□□□ 1.29
SDCBP-204ENST00000447182 UPF3BQ9BZI7 483 aaKnown RBP23.1■■□□□ 1.29
SDCBP-204ENST00000447182 TSPY26PQ9H489 355 aa23.1■■□□□ 1.29
SDCBP-204ENST00000447182 PHF14O94880 888 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms