RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 SLC52A2Q9HAB3 445 aa23.98■■□□□ 1.43
CPSF4-205ENST00000440514 STK32BQ9NY57 414 aa23.98■■□□□ 1.43
CPSF4-205ENST00000440514 SIPA1L3O60292 1781 aaPredicted RBP23.98■■□□□ 1.43
CPSF4-205ENST00000440514 CASZ1Q86V15 1759 aa23.98■■□□□ 1.43
CPSF4-205ENST00000440514 DLG5Q8TDM6 1919 aa23.98■■□□□ 1.43
CPSF4-205ENST00000440514 WDR43Q15061 677 aaKnown RBP eCLIP23.96■■□□□ 1.43
CPSF4-205ENST00000440514 SLC15A2Q16348 729 aa23.96■■□□□ 1.43
CPSF4-205ENST00000440514 CCDC184Q52MB2 194 aa23.95■■□□□ 1.42
CPSF4-205ENST00000440514 MAPK8IP3Q9UPT6 1336 aa23.94■■□□□ 1.42
CPSF4-205ENST00000440514 C4BP0C0L5 1744 aa23.94■■□□□ 1.42
CPSF4-205ENST00000440514 NEFMP07197 916 aa23.94■■□□□ 1.42
CPSF4-205ENST00000440514 IL17REQ8NFR9 667 aa23.94■■□□□ 1.42
CPSF4-205ENST00000440514 QSER1Q2KHR3 1735 aa23.93■■□□□ 1.42
CPSF4-205ENST00000440514 CEMIPQ8WUJ3 1361 aa23.93■■□□□ 1.42
CPSF4-205ENST00000440514 ZNF831Q5JPB2 1677 aa23.93■■□□□ 1.42
CPSF4-205ENST00000440514 LOC102724428A0A0B4J2F2 783 aa23.93■■□□□ 1.42
CPSF4-205ENST00000440514 SIK1P57059 783 aa23.93■■□□□ 1.42
CPSF4-205ENST00000440514 AKT1S1Q96B36 256 aa23.93■■□□□ 1.42
CPSF4-205ENST00000440514 RBM42Q9BTD8 480 aaKnown RBP23.92■■□□□ 1.42
CPSF4-205ENST00000440514 TJP1Q07157 1748 aa23.92■■□□□ 1.42
CPSF4-205ENST00000440514 UBR2Q8IWV8 1755 aa23.91■■□□□ 1.42
CPSF4-205ENST00000440514 COL5A3P25940 1745 aaPredicted RBP23.91■■□□□ 1.42
CPSF4-205ENST00000440514 CCDC146Q8IYE0 955 aa23.91■■□□□ 1.42
CPSF4-205ENST00000440514 PDGFDQ9GZP0 370 aaPredicted RBP23.91■■□□□ 1.42
CPSF4-205ENST00000440514 PNNQ9H307 717 aaKnown RBP23.91■■□□□ 1.42
CPSF4-205ENST00000440514 KCPQ6ZWJ8 1503 aa23.9■■□□□ 1.42
CPSF4-205ENST00000440514 TEFQ10587 303 aa23.9■■□□□ 1.42
CPSF4-205ENST00000440514 ITPK1Q13572 414 aa23.9■■□□□ 1.42
CPSF4-205ENST00000440514 NFE2L2Q16236 605 aa23.9■■□□□ 1.42
CPSF4-205ENST00000440514 MCM10Q7L590 875 aa23.9■■□□□ 1.42
CPSF4-205ENST00000440514 SLC4A9Q96Q91 983 aa23.9■■□□□ 1.42
CPSF4-205ENST00000440514 ADAMTS8Q9UP79 889 aa23.9■■□□□ 1.42
CPSF4-205ENST00000440514 LRP5O75197 1615 aa23.9■■□□□ 1.42
CPSF4-205ENST00000440514 CICQ96RK0 1608 aaPredicted RBP23.9■■□□□ 1.42
CPSF4-205ENST00000440514 PTCD1O75127 700 aaKnown RBP23.89■■□□□ 1.41
CPSF4-205ENST00000440514 ATP6V1AP38606 617 aa23.89■■□□□ 1.41
CPSF4-205ENST00000440514 SLC39A6Q13433 755 aa23.89■■□□□ 1.41
CPSF4-205ENST00000440514 DCTN1Q14203 1278 aa23.89■■□□□ 1.41
CPSF4-205ENST00000440514 RTF1Q92541 710 aaKnown RBP23.89■■□□□ 1.41
CPSF4-205ENST00000440514 LINC00116Q8NCU8 138 aa23.88■■□□□ 1.41
CPSF4-205ENST00000440514 PNPLA7Q6ZV29 1317 aa23.86■■□□□ 1.41
CPSF4-205ENST00000440514 TFCP2L1Q9NZI6 479 aa23.86■■□□□ 1.41
CPSF4-205ENST00000440514 UBR3Q6ZT12 1888 aa23.85■■□□□ 1.41
CPSF4-205ENST00000440514 HTATSF1O43719 755 aaKnown RBP23.85■■□□□ 1.41
CPSF4-205ENST00000440514 MRS2Q9HD23 443 aa23.85■■□□□ 1.41
CPSF4-205ENST00000440514 RUNDC1Q96C34 613 aa23.84■■□□□ 1.41
CPSF4-205ENST00000440514 AK7Q96M32 723 aa23.83■■□□□ 1.41
CPSF4-205ENST00000440514 RRP7AQ9Y3A4 280 aaKnown RBP23.83■■□□□ 1.41
CPSF4-205ENST00000440514 TMPOP42166 694 aaKnown RBP23.82■■□□□ 1.4
CPSF4-205ENST00000440514 THUMPD2Q9BTF0 503 aaKnown RBP23.82■■□□□ 1.4
CPSF4-205ENST00000440514 AMIGO3Q86WK7 504 aa23.81■■□□□ 1.4
CPSF4-205ENST00000440514 TTC5Q8N0Z6 440 aa23.81■■□□□ 1.4
CPSF4-205ENST00000440514 ZBTB7AO95365 584 aa23.8■■□□□ 1.4
CPSF4-205ENST00000440514 RIPK4P57078 832 aa23.8■■□□□ 1.4
CPSF4-205ENST00000440514 KDM3BQ7LBC6 1761 aa23.8■■□□□ 1.4
CPSF4-205ENST00000440514 BTBD11A6QL63 1104 aa23.79■■□□□ 1.4
CPSF4-205ENST00000440514 ZNF790Q6PG37 636 aa23.79■■□□□ 1.4
CPSF4-205ENST00000440514 SMIM5Q71RC9 77 aa23.79■■□□□ 1.4
CPSF4-205ENST00000440514 MYH14Q7Z406 1995 aaKnown RBP23.78■■□□□ 1.4
CPSF4-205ENST00000440514 KCNQ3O43525 872 aa23.78■■□□□ 1.4
CPSF4-205ENST00000440514 PHF14O94880 888 aa23.78■■□□□ 1.4
CPSF4-205ENST00000440514 HMGB2P26583 209 aaKnown RBP23.78■■□□□ 1.4
CPSF4-205ENST00000440514 NEUROD2Q15784 382 aa23.78■■□□□ 1.4
CPSF4-205ENST00000440514 DNAJC10Q8IXB1 793 aa23.78■■□□□ 1.4
CPSF4-205ENST00000440514 GNPATO15228 680 aa23.77■■□□□ 1.4
CPSF4-205ENST00000440514 COL23A1Q86Y22 540 aaPredicted RBP23.77■■□□□ 1.4
CPSF4-205ENST00000440514 PNISRQ8TF01 805 aaKnown RBP23.77■■□□□ 1.4
CPSF4-205ENST00000440514 ZNF496Q96IT1 587 aaPredicted RBP23.77■■□□□ 1.4
CPSF4-205ENST00000440514 CNTNAP4Q9C0A0 1308 aa23.77■■□□□ 1.4
CPSF4-205ENST00000440514 MSH5O43196 834 aa23.76■■□□□ 1.39
CPSF4-205ENST00000440514 SPON1Q9HCB6 807 aa23.75■■□□□ 1.39
CPSF4-205ENST00000440514 ATF5Q9Y2D1 282 aaPredicted RBP23.75■■□□□ 1.39
CPSF4-205ENST00000440514 HEG1Q9ULI3 1381 aa23.75■■□□□ 1.39
CPSF4-205ENST00000440514 C4AP0C0L4 1744 aa23.74■■□□□ 1.39
CPSF4-205ENST00000440514 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.74■■□□□ 1.39
CPSF4-205ENST00000440514 CRKLP46109 303 aaKnown RBP23.74■■□□□ 1.39
CPSF4-205ENST00000440514 LMOD3Q0VAK6 560 aa23.74■■□□□ 1.39
CPSF4-205ENST00000440514 TAF7Q15545 349 aaPredicted RBP23.74■■□□□ 1.39
CPSF4-205ENST00000440514 MTFR1LQ9H019 292 aa23.74■■□□□ 1.39
CPSF4-205ENST00000440514 MIS18AQ9NYP9 233 aa23.74■■□□□ 1.39
CPSF4-205ENST00000440514 COL24A1Q17RW2 1714 aa23.73■■□□□ 1.39
CPSF4-205ENST00000440514 APAF1O14727 1248 aa23.73■■□□□ 1.39
CPSF4-205ENST00000440514 SSFA2P28290 1259 aa23.72■■□□□ 1.39
CPSF4-205ENST00000440514 RC3H1Q5TC82 1133 aaKnown RBP23.72■■□□□ 1.39
CPSF4-205ENST00000440514 VSIG10Q8N0Z9 540 aa23.72■■□□□ 1.39
CPSF4-205ENST00000440514 FMNL2Q96PY5 1086 aa23.72■■□□□ 1.39
CPSF4-205ENST00000440514 TRIM35Q9UPQ4 493 aa23.72■■□□□ 1.39
CPSF4-205ENST00000440514 CYP19A1P11511 503 aaPredicted RBP23.71■■□□□ 1.39
CPSF4-205ENST00000440514 FLAD1Q8NFF5 587 aa23.71■■□□□ 1.39
CPSF4-205ENST00000440514 SENP3-EIF4A1A0A087X0R7 540 aa23.7■■□□□ 1.38
CPSF4-205ENST00000440514 CCDC87Q9NVE4 849 aa23.7■■□□□ 1.38
CPSF4-205ENST00000440514 RTCBQ9Y3I0 505 aaKnown RBP23.7■■□□□ 1.38
CPSF4-205ENST00000440514 LAMB4A4D0S4 1761 aa23.7■■□□□ 1.38
CPSF4-205ENST00000440514 PTGER2P43116 358 aa23.69■■□□□ 1.38
CPSF4-205ENST00000440514 INTS5Q6P9B9 1019 aaKnown RBP23.69■■□□□ 1.38
CPSF4-205ENST00000440514 SLC16A10Q8TF71 515 aa23.69■■□□□ 1.38
CPSF4-205ENST00000440514 SRCAPQ6ZRS2 3230 aa23.68■■□□□ 1.38
CPSF4-205ENST00000440514 RPS6KA4O75676 772 aa23.68■■□□□ 1.38
CPSF4-205ENST00000440514 MSL1Q68DK7 614 aa23.68■■□□□ 1.38
CPSF4-205ENST00000440514 PRAMEF22A3QJZ6 481 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms