RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 VIRMAQ69YN4 1812 aaKnown RBP26.88■■□□□ 1.89
CHD3-204ENST00000439235 RXRBP28702 533 aa26.87■■□□□ 1.89
CHD3-204ENST00000439235 CABP4P57796 275 aa26.87■■□□□ 1.89
CHD3-204ENST00000439235 MARCH10Q8NA82 808 aaPredicted RBP26.87■■□□□ 1.89
CHD3-204ENST00000439235 TSR2Q969E8 191 aaKnown RBP26.87■■□□□ 1.89
CHD3-204ENST00000439235 MBIPQ9NS73 344 aa26.87■■□□□ 1.89
CHD3-204ENST00000439235 TSPYL4Q9UJ04 414 aa26.87■■□□□ 1.89
CHD3-204ENST00000439235 TOGARAM1Q9Y4F4 1720 aa26.85■■□□□ 1.89
CHD3-204ENST00000439235 SIPA1L3O60292 1781 aaPredicted RBP26.84■■□□□ 1.89
CHD3-204ENST00000439235 BTBD11A6QL63 1104 aa26.83■■□□□ 1.89
CHD3-204ENST00000439235 NFATC2IPQ8NCF5 419 aa26.81■■□□□ 1.88
CHD3-204ENST00000439235 TMOD3Q9NYL9 352 aa26.81■■□□□ 1.88
CHD3-204ENST00000439235 DOT1LQ8TEK3 1739 aa26.81■■□□□ 1.88
CHD3-204ENST00000439235 MIS18AQ9NYP9 233 aa26.8■■□□□ 1.88
CHD3-204ENST00000439235 BCL9O00512 1426 aa26.8■■□□□ 1.88
CHD3-204ENST00000439235 KDM3BQ7LBC6 1761 aa26.79■■□□□ 1.88
CHD3-204ENST00000439235 CT47B1P0C2W7 299 aaPredicted RBP26.78■■□□□ 1.88
CHD3-204ENST00000439235 EXOSC9Q06265 439 aaKnown RBP26.78■■□□□ 1.88
CHD3-204ENST00000439235 RGS12O14924 1447 aa26.77■■□□□ 1.88
CHD3-204ENST00000439235 KRT27Q7Z3Y8 459 aa26.77■■□□□ 1.88
CHD3-204ENST00000439235 TTC5Q8N0Z6 440 aa26.75■■□□□ 1.87
CHD3-204ENST00000439235 ZNF790Q6PG37 636 aa26.74■■□□□ 1.87
CHD3-204ENST00000439235 UPF1Q92900 1129 aaKnown RBP eCLIP26.74■■□□□ 1.87
CHD3-204ENST00000439235 SYTL4Q96C24 671 aaPredicted RBP26.74■■□□□ 1.87
CHD3-204ENST00000439235 PAPPAQ13219 1627 aa26.74■■□□□ 1.87
CHD3-204ENST00000439235 PRIM1P49642 420 aaKnown RBP26.73■■□□□ 1.87
CHD3-204ENST00000439235 PIGBQ92521 554 aa26.73■■□□□ 1.87
CHD3-204ENST00000439235 ACSBG1Q96GR2 724 aa26.73■■□□□ 1.87
CHD3-204ENST00000439235 ITGB4P16144 1822 aa26.72■■□□□ 1.87
CHD3-204ENST00000439235 SOS1Q07889 1333 aaPredicted RBP26.72■■□□□ 1.87
CHD3-204ENST00000439235 EIF4A1P60842 406 aaKnown RBP26.72■■□□□ 1.87
CHD3-204ENST00000439235 SLC39A6Q13433 755 aa26.71■■□□□ 1.87
CHD3-204ENST00000439235 TWISTNBQ3B726 338 aaPredicted RBP26.71■■□□□ 1.87
CHD3-204ENST00000439235 RCAN3Q9UKA8 241 aa26.71■■□□□ 1.87
CHD3-204ENST00000439235 BRWD3Q6RI45 1802 aa26.71■■□□□ 1.87
CHD3-204ENST00000439235 KCNQ3O43525 872 aa26.7■■□□□ 1.86
CHD3-204ENST00000439235 C8orf58Q8NAV2 365 aa26.7■■□□□ 1.86
CHD3-204ENST00000439235 ZNF428Q96B54 188 aa26.7■■□□□ 1.86
CHD3-204ENST00000439235 NHSQ6T4R5 1651 aa26.7■■□□□ 1.86
CHD3-204ENST00000439235 FAM196AQ6ZSG2 479 aa26.69■■□□□ 1.86
CHD3-204ENST00000439235 HOXB7P09629 217 aa26.68■■□□□ 1.86
CHD3-204ENST00000439235 FAM182BQ5T319 152 aa26.68■■□□□ 1.86
CHD3-204ENST00000439235 KRT24Q2M2I5 525 aa26.67■■□□□ 1.86
CHD3-204ENST00000439235 TSPYL6Q8N831 410 aa26.67■■□□□ 1.86
CHD3-204ENST00000439235 FMNL2Q96PY5 1086 aa26.67■■□□□ 1.86
CHD3-204ENST00000439235 ELL2O00472 640 aaPredicted RBP26.66■■□□□ 1.86
CHD3-204ENST00000439235 VAMP4O75379 141 aa26.66■■□□□ 1.86
CHD3-204ENST00000439235 HEG1Q9ULI3 1381 aa26.66■■□□□ 1.86
CHD3-204ENST00000439235 UBR2Q8IWV8 1755 aa26.66■■□□□ 1.86
CHD3-204ENST00000439235 KCPQ6ZWJ8 1503 aa26.65■■□□□ 1.86
CHD3-204ENST00000439235 CHMP4AQ9BY43 222 aa26.65■■□□□ 1.86
CHD3-204ENST00000439235 ATG3Q9NT62 314 aa26.65■■□□□ 1.86
CHD3-204ENST00000439235 ZNF496Q96IT1 587 aaPredicted RBP26.64■■□□□ 1.86
CHD3-204ENST00000439235 ASAP1Q9ULH1 1129 aa26.64■■□□□ 1.86
CHD3-204ENST00000439235 KCNQ2O43526 872 aa26.63■■□□□ 1.85
CHD3-204ENST00000439235 SMARCC1Q92922 1105 aaPredicted RBP26.63■■□□□ 1.85
CHD3-204ENST00000439235 RARSP54136 660 aaKnown RBP26.62■■□□□ 1.85
CHD3-204ENST00000439235 ALDH1L2Q3SY69 923 aa26.62■■□□□ 1.85
CHD3-204ENST00000439235 GIGYF1O75420 1035 aaPredicted RBP26.61■■□□□ 1.85
CHD3-204ENST00000439235 SNRPA1P09661 255 aaKnown RBP26.6■■□□□ 1.85
CHD3-204ENST00000439235 PTCD1O75127 700 aaKnown RBP26.59■■□□□ 1.85
CHD3-204ENST00000439235 BCL11BQ9C0K0 894 aaPredicted RBP26.59■■□□□ 1.85
CHD3-204ENST00000439235 SBF2Q86WG5 1849 aa26.59■■□□□ 1.85
CHD3-204ENST00000439235 PALLDQ8WX93 1383 aa26.58■■□□□ 1.85
CHD3-204ENST00000439235 HDGFL1Q5TGJ6 251 aa26.58■■□□□ 1.85
CHD3-204ENST00000439235 CCDC30Q5VVM6 783 aa26.58■■□□□ 1.85
CHD3-204ENST00000439235 VSIG10Q8N0Z9 540 aa26.58■■□□□ 1.85
CHD3-204ENST00000439235 SMC4Q9NTJ3 1288 aa26.58■■□□□ 1.85
CHD3-204ENST00000439235 SSH1Q8WYL5 1049 aa26.57■■□□□ 1.84
CHD3-204ENST00000439235 RBM42Q9BTD8 480 aaKnown RBP26.57■■□□□ 1.84
CHD3-204ENST00000439235 BTAF1O14981 1849 aa26.56■■□□□ 1.84
CHD3-204ENST00000439235 STK31Q9BXU1 1019 aa26.56■■□□□ 1.84
CHD3-204ENST00000439235 C5P01031 1676 aa26.56■■□□□ 1.84
CHD3-204ENST00000439235 LAMB4A4D0S4 1761 aa26.56■■□□□ 1.84
CHD3-204ENST00000439235 TEX13AQ9BXU3 409 aaPredicted RBP26.55■■□□□ 1.84
CHD3-204ENST00000439235 SUPT16HQ9Y5B9 1047 aaKnown RBP26.55■■□□□ 1.84
CHD3-204ENST00000439235 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.54■■□□□ 1.84
CHD3-204ENST00000439235 BCL2L13Q9BXK5 485 aa26.54■■□□□ 1.84
CHD3-204ENST00000439235 KAT6BQ8WYB5 2073 aa26.53■■□□□ 1.84
CHD3-204ENST00000439235 BCAR3O75815 825 aa26.53■■□□□ 1.84
CHD3-204ENST00000439235 EIF2S2P20042 333 aaKnown RBP26.53■■□□□ 1.84
CHD3-204ENST00000439235 KIF16BQ96L93 1317 aa26.53■■□□□ 1.84
CHD3-204ENST00000439235 PRAMEF22A3QJZ6 481 aa26.52■■□□□ 1.84
CHD3-204ENST00000439235 TRIM37O94972 964 aa26.52■■□□□ 1.84
CHD3-204ENST00000439235 BRPF1P55201 1214 aaPredicted RBP26.52■■□□□ 1.84
CHD3-204ENST00000439235 PTF1AQ7RTS3 328 aa26.52■■□□□ 1.84
CHD3-204ENST00000439235 CICQ96RK0 1608 aaPredicted RBP26.51■■□□□ 1.83
CHD3-204ENST00000439235 RNF123Q5XPI4 1314 aa26.51■■□□□ 1.83
CHD3-204ENST00000439235 RRP1P56182 461 aaKnown RBP26.51■■□□□ 1.83
CHD3-204ENST00000439235 MRPL50Q8N5N7 158 aaKnown RBP26.51■■□□□ 1.83
CHD3-204ENST00000439235 LOC102724428A0A0B4J2F2 783 aa26.5■■□□□ 1.83
CHD3-204ENST00000439235 TCERG1O14776 1098 aaKnown RBP26.5■■□□□ 1.83
CHD3-204ENST00000439235 SIK1P57059 783 aa26.5■■□□□ 1.83
CHD3-204ENST00000439235 NECTIN2Q92692 538 aa26.5■■□□□ 1.83
CHD3-204ENST00000439235 ERBB4Q15303 1308 aa26.49■■□□□ 1.83
CHD3-204ENST00000439235 CANXP27824 592 aaKnown RBP26.49■■□□□ 1.83
CHD3-204ENST00000439235 DBF4Q9UBU7 674 aaPredicted RBP26.49■■□□□ 1.83
CHD3-204ENST00000439235 USP16Q9Y5T5 823 aa26.49■■□□□ 1.83
CHD3-204ENST00000439235 ZNF831Q5JPB2 1677 aa26.49■■□□□ 1.83
CHD3-204ENST00000439235 DNAJC10Q8IXB1 793 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms