RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 RLBP1P12271 317 aa9.79□□□□□ -0.84
TMEM39A-202ENST00000438581 IFFO2Q5TF58 517 aa9.79□□□□□ -0.84
TMEM39A-202ENST00000438581 ZCRB1Q8TBF4 217 aaKnown RBP9.79□□□□□ -0.84
TMEM39A-202ENST00000438581 EDC4Q6P2E9 1401 aaKnown RBP9.79□□□□□ -0.84
TMEM39A-202ENST00000438581 NPC1L1Q9UHC9 1359 aa9.79□□□□□ -0.84
TMEM39A-202ENST00000438581 GPTP24298 496 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 IRX3P78415 501 aaPredicted RBP9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 DNTTIP2Q5QJE6 756 aaKnown RBP9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 MCTP1Q6DN14 999 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 NFATC2IPQ8NCF5 419 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 CHPF2Q9P2E5 772 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 VAMP4O75379 141 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 TRDNQ13061 729 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 MPHOSPH8Q99549 860 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 CEP126Q9P2H0 1117 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 MAP3K2Q9Y2U5 619 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 MTERF4Q7Z6M4 381 aaKnown RBP9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 MEIS3Q99687 375 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 LRRIQ1Q96JM4 1722 aa9.78□□□□□ -0.84
TMEM39A-202ENST00000438581 A0A087WZG4 1122 aa9.77□□□□□ -0.84
TMEM39A-202ENST00000438581 NRDCO43847 1150 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 FOSBP53539 338 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 HYPKQ9NX55 129 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 DDX49Q9Y6V7 483 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 EFCAB6Q5THR3 1501 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 RAD21O60216 631 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 FKBP4Q02790 459 aaKnown RBP eCLIP9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 AKAP4Q5JQC9 854 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 ACSBG1Q96GR2 724 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 NOL10Q9BSC4 688 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 ERVK-7P63135 1459 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 CALRP27797 417 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 KIF3AQ9Y496 699 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 ABCC3O15438 1527 aa9.77□□□□□ -0.85
TMEM39A-202ENST00000438581 VPS37CA5D8V6 355 aaPredicted RBP9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 CPLX1O14810 134 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 SF3A1Q15459 793 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 C8orf37Q96NL8 207 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 CHMP5Q9NZZ3 219 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 PTPRCP08575 1304 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 PATL2C9JE40 543 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 HTATSF1O43719 755 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 ZFYVE9O95405 1425 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 CCDC158Q5M9N0 1113 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 ROBO2Q9HCK4 1378 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 SBNO2Q9Y2G9 1366 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 SNRPA1P09661 255 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 CWC27Q6UX04 472 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 SYNE3Q6ZMZ3 975 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 UBE3BQ7Z3V4 1068 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 TRIM35Q9UPQ4 493 aa9.76□□□□□ -0.85
TMEM39A-202ENST00000438581 TTC39AQ5SRH9 613 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 L1TD1Q5T7N2 865 aaKnown RBP9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 COPS6Q7L5N1 327 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 RALYLQ86SE5 291 aaKnown RBP9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 MRPL50Q8N5N7 158 aaKnown RBP9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 SLAIN2Q9P270 581 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 KIF1BPQ96EK5 621 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 CCDC8Q9H0W5 538 aaPredicted RBP9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 NBPF6Q5VWK0 638 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 TSHZ3Q63HK5 1081 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 SIRT1Q96EB6 747 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 NBPF4Q96M43 638 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 TBC1D2BQ9UPU7 963 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 SMC3Q9UQE7 1217 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 CPLX2Q6PUV4 134 aaKnown RBP9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 NFXL1Q6ZNB6 911 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 XAGE3Q8WTP9 111 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 BTG4Q9NY30 223 aa9.75□□□□□ -0.85
TMEM39A-202ENST00000438581 ARAP3Q8WWN8 1544 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 PLXNC1O60486 1568 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 GOLGA6L3A6NEY3 463 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 ANKRD13DQ6ZTN6 518 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 PPP1R42Q7Z4L9 355 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 DRC7Q8IY82 874 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 BOLA2Q9H3K6 86 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 LGR6Q9HBX8 967 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 LMTK3Q96Q04 1460 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 MX1P20591 662 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 AKAP17AQ02040 695 aaKnown RBP9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 STK11IPQ8N1F8 1099 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 SYAP1Q96A49 352 aaPredicted RBP9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 TRMT112Q9UI30 125 aaKnown RBP9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 PRR36Q9H6K5 1346 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 KDM5CP41229 1560 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 KIF1BO60333 1816 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 KDM4AO75164 1064 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 IL2RBP14784 551 aa9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 PPP1R1BQ9UD71 204 aaPredicted RBP9.74□□□□□ -0.85
TMEM39A-202ENST00000438581 SBNO1A3KN83 1393 aa9.73□□□□□ -0.85
TMEM39A-202ENST00000438581 RNF216Q9NWF9 866 aaPredicted RBP9.73□□□□□ -0.85
TMEM39A-202ENST00000438581 MTMR7Q9Y216 660 aa9.73□□□□□ -0.85
TMEM39A-202ENST00000438581 PIK3R4Q99570 1358 aa9.73□□□□□ -0.85
TMEM39A-202ENST00000438581 ARHGAP45Q92619 1136 aa9.73□□□□□ -0.85
TMEM39A-202ENST00000438581 SECISBP2LQ93073 1101 aaKnown RBP9.73□□□□□ -0.85
TMEM39A-202ENST00000438581 PLEKHG1Q9ULL1 1385 aa9.73□□□□□ -0.85
TMEM39A-202ENST00000438581 DDX11L8A8MPP1 907 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 METTL24Q5JXM2 366 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 G2E3Q7L622 706 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 CERS3Q8IU89 383 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms