RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 GSE1Q14687 1217 aa11.86□□□□□ -0.51
CUX1-206ENST00000437600 NUTM2AQ8IVF1 878 aaPredicted RBP11.86□□□□□ -0.51
CUX1-206ENST00000437600 TOM1O60784 492 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 BECN1Q14457 450 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 IL17REQ8NFR9 667 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 USP35Q9P2H5 1018 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 USP54Q70EL1 1684 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 KDRP35968 1356 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 ADAMTS2O95450 1211 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 ANKRD24Q8TF21 1146 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 SLIT3O75094 1523 aa11.85□□□□□ -0.51
CUX1-206ENST00000437600 GAS2L2Q8NHY3 880 aa11.84□□□□□ -0.51
CUX1-206ENST00000437600 MEIS3Q99687 375 aa11.84□□□□□ -0.51
CUX1-206ENST00000437600 LGR6Q9HBX8 967 aa11.84□□□□□ -0.51
CUX1-206ENST00000437600 PRDM11Q9NQV5 511 aa11.84□□□□□ -0.51
CUX1-206ENST00000437600 BRPF3Q9ULD4 1205 aa11.84□□□□□ -0.51
CUX1-206ENST00000437600 GNAT3A8MTJ3 354 aa11.84□□□□□ -0.51
CUX1-206ENST00000437600 STRN4Q9NRL3 753 aa11.84□□□□□ -0.51
CUX1-206ENST00000437600 CSB-PGBD3P0DP91 1061 aa11.84□□□□□ -0.51
CUX1-206ENST00000437600 GZF1Q9H116 711 aaPredicted RBP11.84□□□□□ -0.51
CUX1-206ENST00000437600 MPRIPQ6WCQ1 1025 aa11.83□□□□□ -0.52
CUX1-206ENST00000437600 NLRP2Q9NX02 1062 aa11.83□□□□□ -0.52
CUX1-206ENST00000437600 PHLPP1O60346 1717 aa11.83□□□□□ -0.52
CUX1-206ENST00000437600 CRYBG1Q9Y4K1 1723 aa11.83□□□□□ -0.52
CUX1-206ENST00000437600 CERKQ8TCT0 537 aa11.83□□□□□ -0.52
CUX1-206ENST00000437600 RGPD1P0DJD0 1748 aa11.83□□□□□ -0.52
CUX1-206ENST00000437600 CRB1P82279 1406 aa11.82□□□□□ -0.52
CUX1-206ENST00000437600 TSHZ3Q63HK5 1081 aa11.82□□□□□ -0.52
CUX1-206ENST00000437600 KAT6BQ8WYB5 2073 aa11.81□□□□□ -0.52
CUX1-206ENST00000437600 ERBB3P21860 1342 aa11.81□□□□□ -0.52
CUX1-206ENST00000437600 CD2BP2O95400 341 aaKnown RBP11.81□□□□□ -0.52
CUX1-206ENST00000437600 ARHGAP45Q92619 1136 aa11.81□□□□□ -0.52
CUX1-206ENST00000437600 KCNQ3O43525 872 aa11.81□□□□□ -0.52
CUX1-206ENST00000437600 ZNF530Q6P9A1 599 aaPredicted RBP11.81□□□□□ -0.52
CUX1-206ENST00000437600 API5Q9BZZ5 524 aaKnown RBP11.81□□□□□ -0.52
CUX1-206ENST00000437600 ANTXR1Q9H6X2 564 aa11.81□□□□□ -0.52
CUX1-206ENST00000437600 ABCA3Q99758 1704 aa11.8□□□□□ -0.52
CUX1-206ENST00000437600 ABCC4O15439 1325 aa11.8□□□□□ -0.52
CUX1-206ENST00000437600 TBC1D9Q6ZT07 1266 aa11.8□□□□□ -0.52
CUX1-206ENST00000437600 EIF2S2P20042 333 aaKnown RBP11.8□□□□□ -0.52
CUX1-206ENST00000437600 ANXA1P04083 346 aa11.79□□□□□ -0.52
CUX1-206ENST00000437600 GSPT1P15170 499 aaKnown RBP11.79□□□□□ -0.52
CUX1-206ENST00000437600 BRPF1P55201 1214 aaPredicted RBP11.79□□□□□ -0.52
CUX1-206ENST00000437600 MAP3K5Q99683 1374 aa11.79□□□□□ -0.52
CUX1-206ENST00000437600 CAMTA1Q9Y6Y1 1673 aa11.79□□□□□ -0.52
CUX1-206ENST00000437600 COL18A1P39060 1754 aa11.79□□□□□ -0.52
CUX1-206ENST00000437600 BTG4Q9NY30 223 aa11.78□□□□□ -0.52
CUX1-206ENST00000437600 PLEKHM2Q8IWE5 1019 aa11.78□□□□□ -0.52
CUX1-206ENST00000437600 GCC1Q96CN9 775 aa11.78□□□□□ -0.52
CUX1-206ENST00000437600 EXOC6BQ9Y2D4 811 aa11.78□□□□□ -0.52
CUX1-206ENST00000437600 RTL1A6NKG5 1358 aa11.78□□□□□ -0.52
CUX1-206ENST00000437600 COL16A1Q07092 1604 aaPredicted RBP11.78□□□□□ -0.52
CUX1-206ENST00000437600 LARP1Q6PKG0 1096 aaKnown RBP11.78□□□□□ -0.52
CUX1-206ENST00000437600 KLHL34Q8N239 644 aa11.78□□□□□ -0.52
CUX1-206ENST00000437600 FKBP5Q13451 457 aaPredicted RBP11.77□□□□□ -0.52
CUX1-206ENST00000437600 TAF7Q15545 349 aaPredicted RBP11.77□□□□□ -0.53
CUX1-206ENST00000437600 TOM1L2Q6ZVM7 507 aa11.77□□□□□ -0.53
CUX1-206ENST00000437600 AHDC1Q5TGY3 1603 aaPredicted RBP11.77□□□□□ -0.53
CUX1-206ENST00000437600 CEP85Q6P2H3 762 aa11.76□□□□□ -0.53
CUX1-206ENST00000437600 KIF24Q5T7B8 1368 aa11.76□□□□□ -0.53
CUX1-206ENST00000437600 HSPA1LP34931 641 aa11.76□□□□□ -0.53
CUX1-206ENST00000437600 TEFQ10587 303 aa11.76□□□□□ -0.53
CUX1-206ENST00000437600 BMP2KLQ5H9B9 411 aa11.76□□□□□ -0.53
CUX1-206ENST00000437600 DCTPP1Q9H773 170 aa11.76□□□□□ -0.53
CUX1-206ENST00000437600 PHAXQ9H814 394 aaKnown RBP11.76□□□□□ -0.53
CUX1-206ENST00000437600 EVA1CP58658 441 aa11.76□□□□□ -0.53
CUX1-206ENST00000437600 INTS3Q68E01 1043 aaKnown RBP11.76□□□□□ -0.53
CUX1-206ENST00000437600 C1orf141Q5JVX7 400 aa11.75□□□□□ -0.53
CUX1-206ENST00000437600 KIF2CQ99661 725 aa11.75□□□□□ -0.53
CUX1-206ENST00000437600 STK31Q9BXU1 1019 aa11.75□□□□□ -0.53
CUX1-206ENST00000437600 PRAMEF22A3QJZ6 481 aa11.75□□□□□ -0.53
CUX1-206ENST00000437600 HSP90AA1P07900 732 aaKnown RBP11.75□□□□□ -0.53
CUX1-206ENST00000437600 HSCBQ8IWL3 235 aa11.75□□□□□ -0.53
CUX1-206ENST00000437600 PLEKHO1Q53GL0 409 aaPredicted RBP11.74□□□□□ -0.53
CUX1-206ENST00000437600 HDGFL1Q5TGJ6 251 aa11.74□□□□□ -0.53
CUX1-206ENST00000437600 BTBD11A6QL63 1104 aa11.74□□□□□ -0.53
CUX1-206ENST00000437600 PNMA6EA0A0J9YXQ4 647 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 SLC39A6Q13433 755 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 ANKRD44Q8N8A2 993 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 CPDO75976 1380 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 HSP90AB1P08238 724 aaKnown RBP11.73□□□□□ -0.53
CUX1-206ENST00000437600 PDE4CQ08493 712 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 FLIIQ13045 1269 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 C8orf37Q96NL8 207 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 RGS12O14924 1447 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 COL5A2P05997 1499 aaPredicted RBP11.73□□□□□ -0.53
CUX1-206ENST00000437600 MEGF6O75095 1541 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 RAPGEF4Q8WZA2 1011 aa11.73□□□□□ -0.53
CUX1-206ENST00000437600 PDIA4P13667 645 aaKnown RBP11.72□□□□□ -0.53
CUX1-206ENST00000437600 SDSP20132 328 aa11.72□□□□□ -0.53
CUX1-206ENST00000437600 HTATSF1O43719 755 aaKnown RBP11.72□□□□□ -0.53
CUX1-206ENST00000437600 AKAP4Q5JQC9 854 aa11.72□□□□□ -0.53
CUX1-206ENST00000437600 CHMP4BQ9H444 224 aaKnown RBP11.72□□□□□ -0.53
CUX1-206ENST00000437600 LMO7Q8WWI1 1683 aa11.71□□□□□ -0.53
CUX1-206ENST00000437600 CCDC30Q5VVM6 783 aa11.71□□□□□ -0.53
CUX1-206ENST00000437600 IL1RAPL2Q9NP60 686 aa11.71□□□□□ -0.53
CUX1-206ENST00000437600 CHPF2Q9P2E5 772 aa11.71□□□□□ -0.53
CUX1-206ENST00000437600 WDR17Q8IZU2 1322 aa11.71□□□□□ -0.53
CUX1-206ENST00000437600 RNMTO43148 476 aaKnown RBP11.71□□□□□ -0.54
CUX1-206ENST00000437600 MAP4K4O95819 1239 aaPredicted RBP11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms