RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZSCAN16Q9H4T2 348 aaPredicted RBP8.34□□□□□ -1.07
VPS53-204ENST00000437048 TOMM22Q9NS69 142 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 ERCC6Q03468 1493 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 BUB1BO60566 1050 aaPredicted RBP8.34□□□□□ -1.07
VPS53-204ENST00000437048 SPATA32Q96LK8 384 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 COG6Q9Y2V7 657 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 A0A1B0GUL7 405 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 IRX4P78413 519 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 RPGRIP1Q96KN7 1286 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 UBTFL1P0CB47 393 aaPredicted RBP8.34□□□□□ -1.07
VPS53-204ENST00000437048 GAS2L2Q8NHY3 880 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 GNAI2P04899 355 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 STX1AQ16623 288 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 STIM2Q9P246 746 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 TACC1O75410 805 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 CASQ1P31415 396 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 HDAC9Q9UKV0 1011 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 KIF5BP33176 963 aa8.34□□□□□ -1.08
VPS53-204ENST00000437048 CEP63Q96MT8 703 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 CENPHQ9H3R5 247 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 OGFRQ9NZT2 677 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 PPP1R2P41236 205 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 PPP4R3BQ5MIZ7 849 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 CCDC77Q9BR77 488 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 YEATS4O95619 227 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 GNL3LQ9NVN8 582 aaKnown RBP8.33□□□□□ -1.08
VPS53-204ENST00000437048 FRAT2O75474 233 aaPredicted RBP8.33□□□□□ -1.08
VPS53-204ENST00000437048 UBE2HP62256 183 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 KIF4AO95239 1232 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 TDO2P48775 406 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 CCDC155Q8N6L0 562 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 BCAP29Q9UHQ4 241 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 SPC24Q8NBT2 197 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 SEPT11Q9NVA2 429 aaKnown RBP8.33□□□□□ -1.08
VPS53-204ENST00000437048 ELP1O95163 1332 aa8.33□□□□□ -1.08
VPS53-204ENST00000437048 GTF2F1P35269 517 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS53-204ENST00000437048 ST20-MTHFSA0A0A6YYL1 179 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 ALDH1L2Q3SY69 923 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 PPP1R1BQ9UD71 204 aaPredicted RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 SF3B2Q13435 895 aaKnown RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 ATP5DP30049 168 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 PRDM10Q9NQV6 1147 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 ME1P48163 572 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 USP37Q86T82 979 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 SEC62Q99442 399 aaKnown RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 NUTM2DQ5VT03 806 aaPredicted RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 LRRC45Q96CN5 670 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 TRAF1Q13077 416 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 FBXW7Q969H0 707 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 PANK3Q9H999 370 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 RRP7AQ9Y3A4 280 aaKnown RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 MAP4K4O95819 1239 aaPredicted RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 KIAA1524Q8TCG1 905 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 CTDP1Q9Y5B0 961 aaPredicted RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 TTC31Q49AM3 519 aaPredicted RBP8.32□□□□□ -1.08
VPS53-204ENST00000437048 VPS53Q5VIR6 699 aa8.32□□□□□ -1.08
VPS53-204ENST00000437048 ALDH3A1P30838 453 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 FSD2A1L4K1 749 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 GRIPAP1Q4V328 841 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 CCDC184Q52MB2 194 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 LARP1BQ659C4 914 aaKnown RBP8.31□□□□□ -1.08
VPS53-204ENST00000437048 HMG20BQ9P0W2 317 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 RALGAPBQ86X10 1494 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 LUC7L3O95232 432 aaKnown RBP8.31□□□□□ -1.08
VPS53-204ENST00000437048 IFFO1Q0D2I5 559 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 BLOC1S2Q6QNY1 142 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 ARHGAP24Q8N264 748 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 ATP2A1O14983 1001 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 NOL3O60936 208 aaKnown RBP8.31□□□□□ -1.08
VPS53-204ENST00000437048 KDM4AO75164 1064 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 MAP3K9P80192 1104 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 U3KPZ7 1027 aaPredicted RBP8.31□□□□□ -1.08
VPS53-204ENST00000437048 CAMSAP2Q08AD1 1489 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 PPP2R5EQ16537 467 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 TOP1P11387 765 aaKnown RBP8.31□□□□□ -1.08
VPS53-204ENST00000437048 RASAL2Q9UJF2 1139 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 GBP6Q6ZN66 633 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 LRRFIP2Q9Y608 721 aaKnown RBP8.31□□□□□ -1.08
VPS53-204ENST00000437048 TTC21AQ8NDW8 1320 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 G3V3G9 751 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 GIGYF1O75420 1035 aaPredicted RBP8.31□□□□□ -1.08
VPS53-204ENST00000437048 DCAF8Q5TAQ9 597 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 MAP3K21Q5TCX8 1036 aa8.31□□□□□ -1.08
VPS53-204ENST00000437048 ATF7IPQ6VMQ6 1270 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 ZKSCAN5Q9Y2L8 839 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 MVPQ14764 893 aaKnown RBP8.3□□□□□ -1.08
VPS53-204ENST00000437048 RMND1Q9NWS8 449 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.3□□□□□ -1.084e-6■■■□□ 17.1
VPS53-204ENST00000437048 EIF2AK4Q9P2K8 1649 aaKnown RBP8.3□□□□□ -1.08
VPS53-204ENST00000437048 AMPD3Q01432 767 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 VCXQ9H320 206 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 HNRNPMP52272 730 aaKnown RBP eCLIP8.3□□□□□ -1.083e-6■■■□□ 17.4
VPS53-204ENST00000437048 CCDC174Q6PII3 467 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 PODNQ7Z5L7 613 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 MPHOSPH10O00566 681 aaKnown RBP8.3□□□□□ -1.08
VPS53-204ENST00000437048 SNW1Q13573 536 aaKnown RBP8.3□□□□□ -1.08
VPS53-204ENST00000437048 STXBP4Q6ZWJ1 553 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 AQRO60306 1485 aaKnown RBP eCLIP8.3□□□□□ -1.087e-8■■■■■ 27.9
VPS53-204ENST00000437048 THOC2Q8NI27 1593 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms