RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 OVOS2A0A0G2JMS6 1433 aa26.78■■□□□ 1.88
PTPRF-207ENST00000436724 KDM6AO15550 1401 aaPredicted RBP26.78■■□□□ 1.88
PTPRF-207ENST00000436724 STK31Q9BXU1 1019 aa26.77■■□□□ 1.88
PTPRF-207ENST00000436724 ADAMTS7Q9UKP4 1686 aa26.76■■□□□ 1.88
PTPRF-207ENST00000436724 EVA1CP58658 441 aa26.76■■□□□ 1.87
PTPRF-207ENST00000436724 CCDC30Q5VVM6 783 aa26.76■■□□□ 1.87
PTPRF-207ENST00000436724 IFNL2Q8IZJ0 200 aa26.76■■□□□ 1.87
PTPRF-207ENST00000436724 PTPRCP08575 1304 aa26.75■■□□□ 1.87
PTPRF-207ENST00000436724 PIP4K2BP78356 416 aa26.74■■□□□ 1.87
PTPRF-207ENST00000436724 RWDD1Q9H446 243 aaPredicted RBP26.74■■□□□ 1.87
PTPRF-207ENST00000436724 PKD1L3Q7Z443 1732 aa26.74■■□□□ 1.87
PTPRF-207ENST00000436724 SIPA1L3O60292 1781 aaPredicted RBP26.74■■□□□ 1.87
PTPRF-207ENST00000436724 HDGFL1Q5TGJ6 251 aa26.74■■□□□ 1.87
PTPRF-207ENST00000436724 C1orf115Q9H7X2 142 aa26.74■■□□□ 1.87
PTPRF-207ENST00000436724 BTG4Q9NY30 223 aa26.74■■□□□ 1.87
PTPRF-207ENST00000436724 EIF2S2P20042 333 aaKnown RBP26.73■■□□□ 1.87
PTPRF-207ENST00000436724 RGS3P49796 1198 aa26.73■■□□□ 1.87
PTPRF-207ENST00000436724 SCN11AQ9UI33 1791 aa26.73■■□□□ 1.87
PTPRF-207ENST00000436724 CARD10Q9BWT7 1032 aa26.73■■□□□ 1.87
PTPRF-207ENST00000436724 USP35Q9P2H5 1018 aa26.73■■□□□ 1.87
PTPRF-207ENST00000436724 SOS1Q07889 1333 aaPredicted RBP26.72■■□□□ 1.87
PTPRF-207ENST00000436724 F6X3S4 739 aa26.72■■□□□ 1.87
PTPRF-207ENST00000436724 INTS3Q68E01 1043 aaKnown RBP26.71■■□□□ 1.87
PTPRF-207ENST00000436724 NFATC2IPQ8NCF5 419 aa26.71■■□□□ 1.87
PTPRF-207ENST00000436724 SLC52A2Q9HAB3 445 aa26.71■■□□□ 1.87
PTPRF-207ENST00000436724 FLIIQ13045 1269 aa26.7■■□□□ 1.87
PTPRF-207ENST00000436724 PHLPP1O60346 1717 aa26.69■■□□□ 1.86
PTPRF-207ENST00000436724 SLC39A6Q13433 755 aa26.69■■□□□ 1.86
PTPRF-207ENST00000436724 PLEKHG2Q9H7P9 1386 aa26.69■■□□□ 1.86
PTPRF-207ENST00000436724 PARP4Q9UKK3 1724 aaKnown RBP26.69■■□□□ 1.86
PTPRF-207ENST00000436724 DCAF5Q96JK2 942 aa26.68■■□□□ 1.86
PTPRF-207ENST00000436724 COL22A1Q8NFW1 1626 aaPredicted RBP26.68■■□□□ 1.86
PTPRF-207ENST00000436724 PRAMEF22A3QJZ6 481 aa26.68■■□□□ 1.86
PTPRF-207ENST00000436724 IL2RBP14784 551 aa26.68■■□□□ 1.86
PTPRF-207ENST00000436724 HDAC1Q13547 482 aaPredicted RBP26.68■■□□□ 1.86
PTPRF-207ENST00000436724 SLC4A10Q6U841 1118 aa26.68■■□□□ 1.86
PTPRF-207ENST00000436724 ZCRB1Q8TBF4 217 aaKnown RBP26.68■■□□□ 1.86
PTPRF-207ENST00000436724 FKBP5Q13451 457 aaPredicted RBP26.67■■□□□ 1.86
PTPRF-207ENST00000436724 COL16A1Q07092 1604 aaPredicted RBP26.67■■□□□ 1.86
PTPRF-207ENST00000436724 TOM1O60784 492 aa26.67■■□□□ 1.86
PTPRF-207ENST00000436724 PHAXQ9H814 394 aaKnown RBP26.67■■□□□ 1.86
PTPRF-207ENST00000436724 GIGYF1O75420 1035 aaPredicted RBP26.65■■□□□ 1.86
PTPRF-207ENST00000436724 HOXB7P09629 217 aa26.65■■□□□ 1.86
PTPRF-207ENST00000436724 CHPF2Q9P2E5 772 aa26.65■■□□□ 1.86
PTPRF-207ENST00000436724 CHMP4BQ9H444 224 aaKnown RBP26.65■■□□□ 1.86
PTPRF-207ENST00000436724 HEG1Q9ULI3 1381 aa26.65■■□□□ 1.86
PTPRF-207ENST00000436724 CACNA1FO60840 1977 aa26.65■■□□□ 1.86
PTPRF-207ENST00000436724 ZNF790Q6PG37 636 aa26.64■■□□□ 1.86
PTPRF-207ENST00000436724 PDZRN3Q9UPQ7 1066 aa26.64■■□□□ 1.86
PTPRF-207ENST00000436724 ANXA1P04083 346 aa26.64■■□□□ 1.85
PTPRF-207ENST00000436724 PCDH11XQ9BZA7 1347 aa26.64■■□□□ 1.85
PTPRF-207ENST00000436724 PCDH11YQ9BZA8 1340 aa26.64■■□□□ 1.85
PTPRF-207ENST00000436724 ERICH6Q7L0X2 663 aa26.63■■□□□ 1.85
PTPRF-207ENST00000436724 COL14A1Q05707 1796 aaKnown RBP26.63■■□□□ 1.85
PTPRF-207ENST00000436724 ADAMTS2O95450 1211 aa26.63■■□□□ 1.85
PTPRF-207ENST00000436724 HSP90AB1P08238 724 aaKnown RBP26.63■■□□□ 1.85
PTPRF-207ENST00000436724 DDX54Q8TDD1 881 aaKnown RBP26.63■■□□□ 1.85
PTPRF-207ENST00000436724 PDE4AP27815 886 aa26.62■■□□□ 1.85
PTPRF-207ENST00000436724 MRC1P22897 1456 aa26.61■■□□□ 1.85
PTPRF-207ENST00000436724 SIRT2Q8IXJ6 389 aa26.61■■□□□ 1.85
PTPRF-207ENST00000436724 MEIS3Q99687 375 aa26.61■■□□□ 1.85
PTPRF-207ENST00000436724 UBAP1LF5GYI3 381 aa26.6■■□□□ 1.85
PTPRF-207ENST00000436724 CABP4P57796 275 aa26.6■■□□□ 1.85
PTPRF-207ENST00000436724 SHANK3Q9BYB0 1731 aa26.59■■□□□ 1.85
PTPRF-207ENST00000436724 SMC5Q8IY18 1101 aa26.58■■□□□ 1.85
PTPRF-207ENST00000436724 CCT4P50991 539 aaKnown RBP26.58■■□□□ 1.85
PTPRF-207ENST00000436724 NUTM2BA6NNL0 878 aaPredicted RBP26.57■■□□□ 1.84
PTPRF-207ENST00000436724 NUTM2EB1AL46 878 aaPredicted RBP26.57■■□□□ 1.84
PTPRF-207ENST00000436724 PROSER3Q2NL68 480 aa26.57■■□□□ 1.84
PTPRF-207ENST00000436724 NUTM2AQ8IVF1 878 aaPredicted RBP26.57■■□□□ 1.84
PTPRF-207ENST00000436724 ZNF496Q96IT1 587 aaPredicted RBP26.57■■□□□ 1.84
PTPRF-207ENST00000436724 BACH2Q9BYV9 841 aa26.57■■□□□ 1.84
PTPRF-207ENST00000436724 DBF4Q9UBU7 674 aaPredicted RBP26.56■■□□□ 1.84
PTPRF-207ENST00000436724 TTC5Q8N0Z6 440 aa26.54■■□□□ 1.84
PTPRF-207ENST00000436724 C5P01031 1676 aa26.54■■□□□ 1.84
PTPRF-207ENST00000436724 CHMP4AQ9BY43 222 aa26.54■■□□□ 1.84
PTPRF-207ENST00000436724 NKX1-1Q15270 411 aaPredicted RBP26.53■■□□□ 1.84
PTPRF-207ENST00000436724 ATP10DQ9P241 1426 aa26.53■■□□□ 1.84
PTPRF-207ENST00000436724 PLCH1Q4KWH8 1693 aa26.51■■□□□ 1.84
PTPRF-207ENST00000436724 PI4KAP2A4QPH2 592 aa26.51■■□□□ 1.84
PTPRF-207ENST00000436724 PI4KAP1Q8N8J0 262 aa26.51■■□□□ 1.84
PTPRF-207ENST00000436724 NOP58Q9Y2X3 529 aaKnown RBP26.5■■□□□ 1.83
PTPRF-207ENST00000436724 ERVV-2B6SEH9 535 aa26.5■■□□□ 1.83
PTPRF-207ENST00000436724 CEP85Q6P2H3 762 aa26.5■■□□□ 1.83
PTPRF-207ENST00000436724 PDIA6Q15084 440 aa26.49■■□□□ 1.83
PTPRF-207ENST00000436724 USP16Q9Y5T5 823 aa26.49■■□□□ 1.83
PTPRF-207ENST00000436724 DISP2A7MBM2 1401 aa26.49■■□□□ 1.83
PTPRF-207ENST00000436724 C8orf34Q49A92 452 aa26.48■■□□□ 1.83
PTPRF-207ENST00000436724 FMNL2Q96PY5 1086 aa26.48■■□□□ 1.83
PTPRF-207ENST00000436724 ANKRD44Q8N8A2 993 aa26.48■■□□□ 1.83
PTPRF-207ENST00000436724 ADCY9O60503 1353 aa26.48■■□□□ 1.83
PTPRF-207ENST00000436724 PXDNLA1KZ92 1463 aa26.48■■□□□ 1.83
PTPRF-207ENST00000436724 NUCB1Q02818 461 aa26.47■■□□□ 1.83
PTPRF-207ENST00000436724 SNRPA1P09661 255 aaKnown RBP26.47■■□□□ 1.83
PTPRF-207ENST00000436724 ANP32AP39687 249 aaKnown RBP26.47■■□□□ 1.83
PTPRF-207ENST00000436724 FAM161AQ3B820 660 aa26.47■■□□□ 1.83
PTPRF-207ENST00000436724 DNAAF4Q8WXU2 420 aa26.47■■□□□ 1.83
PTPRF-207ENST00000436724 IPO9Q96P70 1041 aaKnown RBP26.47■■□□□ 1.83
PTPRF-207ENST00000436724 LNPKQ9C0E8 428 aa26.47■■□□□ 1.83
PTPRF-207ENST00000436724 DDX21Q9NR30 783 aaKnown RBP eCLIP26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms