RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 LRRC4BQ9NT99 713 aa10.73□□□□□ -0.69
VPS50-203ENST00000436177 CCNL1Q9UK58 526 aaPredicted RBP10.73□□□□□ -0.69
VPS50-203ENST00000436177 TIMELESSQ9UNS1 1208 aa10.73□□□□□ -0.69
VPS50-203ENST00000436177 INSRP06213 1382 aa10.73□□□□□ -0.69
VPS50-203ENST00000436177 KIF24Q5T7B8 1368 aa10.73□□□□□ -0.69
VPS50-203ENST00000436177 NSD3Q9BZ95 1437 aa10.73□□□□□ -0.69
VPS50-203ENST00000436177 POTEMA6NI47 508 aa10.72□□□□□ -0.69
VPS50-203ENST00000436177 TIE1P35590 1138 aa10.72□□□□□ -0.69
VPS50-203ENST00000436177 PCGF6Q9BYE7 350 aa10.72□□□□□ -0.69
VPS50-203ENST00000436177 KCNQ4P56696 695 aa10.71□□□□□ -0.69
VPS50-203ENST00000436177 PAPPAQ13219 1627 aa10.71□□□□□ -0.69
VPS50-203ENST00000436177 HSP90AB2PQ58FF8 381 aa10.71□□□□□ -0.69
VPS50-203ENST00000436177 CLSPNQ9HAW4 1339 aa10.71□□□□□ -0.69
VPS50-203ENST00000436177 ZBTB47Q9UFB7 747 aaPredicted RBP10.71□□□□□ -0.69
VPS50-203ENST00000436177 PCDHB13Q9Y5F0 798 aa10.71□□□□□ -0.69
VPS50-203ENST00000436177 MAP3K5Q99683 1374 aa10.7□□□□□ -0.7
VPS50-203ENST00000436177 POTEFA5A3E0 1075 aa10.7□□□□□ -0.7
VPS50-203ENST00000436177 TTLL13PA6NNM8 815 aa10.7□□□□□ -0.7
VPS50-203ENST00000436177 NUBP1P53384 320 aa10.7□□□□□ -0.7
VPS50-203ENST00000436177 GPR162Q16538 588 aa10.7□□□□□ -0.7
VPS50-203ENST00000436177 MAMSTRQ6ZN01 415 aa10.7□□□□□ -0.7
VPS50-203ENST00000436177 SGIP1Q9BQI5 828 aa10.7□□□□□ -0.7
VPS50-203ENST00000436177 PNPLA7Q6ZV29 1317 aa10.69□□□□□ -0.7
VPS50-203ENST00000436177 POTEGQ6S5H5 508 aa10.69□□□□□ -0.7
VPS50-203ENST00000436177 SCUBE2Q9NQ36 999 aa10.69□□□□□ -0.7
VPS50-203ENST00000436177 SPG7Q9UQ90 795 aa10.69□□□□□ -0.7
VPS50-203ENST00000436177 EMILIN1Q9Y6C2 1016 aa10.69□□□□□ -0.7
VPS50-203ENST00000436177 DOT1LQ8TEK3 1739 aa10.69□□□□□ -0.7
VPS50-203ENST00000436177 NSD2O96028 1365 aa10.68□□□□□ -0.7
VPS50-203ENST00000436177 PALLDQ8WX93 1383 aa10.68□□□□□ -0.7
VPS50-203ENST00000436177 MPRIPQ6WCQ1 1025 aa10.68□□□□□ -0.7
VPS50-203ENST00000436177 SMARCC1Q92922 1105 aaPredicted RBP10.68□□□□□ -0.7
VPS50-203ENST00000436177 CARD14Q9BXL6 1004 aa10.68□□□□□ -0.7
VPS50-203ENST00000436177 SEC24BO95487 1268 aa10.67□□□□□ -0.7
VPS50-203ENST00000436177 FLAD1Q8NFF5 587 aa10.67□□□□□ -0.7
VPS50-203ENST00000436177 AK7Q96M32 723 aa10.67□□□□□ -0.7
VPS50-203ENST00000436177 KIF20BQ96Q89 1820 aa10.67□□□□□ -0.7
VPS50-203ENST00000436177 TNNT2P45379 298 aaPredicted RBP10.66□□□□□ -0.7
VPS50-203ENST00000436177 EIF4G2P78344 907 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS50-203ENST00000436177 MSL1Q68DK7 614 aa10.66□□□□□ -0.7
VPS50-203ENST00000436177 COLQQ9Y215 455 aaPredicted RBP10.66□□□□□ -0.7
VPS50-203ENST00000436177 CYP27B1O15528 508 aa10.65□□□□□ -0.7
VPS50-203ENST00000436177 ZNF784Q8NCA9 323 aaPredicted RBP10.65□□□□□ -0.7
VPS50-203ENST00000436177 CCER1Q8TC90 406 aaPredicted RBP10.65□□□□□ -0.7
VPS50-203ENST00000436177 FAM212AQ96EL1 285 aa10.65□□□□□ -0.7
VPS50-203ENST00000436177 TMOD3Q9NYL9 352 aa10.65□□□□□ -0.7
VPS50-203ENST00000436177 TRIM35Q9UPQ4 493 aa10.65□□□□□ -0.7
VPS50-203ENST00000436177 WASHC2AQ641Q2 1341 aa10.64□□□□□ -0.71
VPS50-203ENST00000436177 FAM163AQ96GL9 167 aaPredicted RBP10.64□□□□□ -0.71
VPS50-203ENST00000436177 RGPD2P0DJD1 1756 aa10.63□□□□□ -0.71
VPS50-203ENST00000436177 PHF14O94880 888 aa10.63□□□□□ -0.71
VPS50-203ENST00000436177 COL23A1Q86Y22 540 aaPredicted RBP10.63□□□□□ -0.71
VPS50-203ENST00000436177 IFNL1Q8IU54 200 aa10.63□□□□□ -0.71
VPS50-203ENST00000436177 EYA1Q99502 592 aa10.63□□□□□ -0.71
VPS50-203ENST00000436177 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.63□□□□□ -0.71
VPS50-203ENST00000436177 SHANK3Q9BYB0 1731 aa10.62□□□□□ -0.71
VPS50-203ENST00000436177 GRIN3BO60391 1043 aa10.62□□□□□ -0.71
VPS50-203ENST00000436177 IFNL2Q8IZJ0 200 aa10.62□□□□□ -0.71
VPS50-203ENST00000436177 PIGBQ92521 554 aa10.62□□□□□ -0.71
VPS50-203ENST00000436177 POLKQ9UBT6 870 aa10.62□□□□□ -0.71
VPS50-203ENST00000436177 LY75O60449 1722 aa10.61□□□□□ -0.71
VPS50-203ENST00000436177 QSER1Q2KHR3 1735 aa10.61□□□□□ -0.71
VPS50-203ENST00000436177 NCAPD2Q15021 1401 aa10.61□□□□□ -0.71
VPS50-203ENST00000436177 HSPA5P11021 654 aaKnown RBP10.61□□□□□ -0.71
VPS50-203ENST00000436177 NLGN2Q8NFZ4 835 aa10.61□□□□□ -0.71
VPS50-203ENST00000436177 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.6□□□□□ -0.71
VPS50-203ENST00000436177 LOC102724428A0A0B4J2F2 783 aa10.6□□□□□ -0.71
VPS50-203ENST00000436177 HSP90AB1P08238 724 aaKnown RBP10.6□□□□□ -0.71
VPS50-203ENST00000436177 PHKG2P15735 406 aa10.6□□□□□ -0.71
VPS50-203ENST00000436177 SIK1P57059 783 aa10.6□□□□□ -0.71
VPS50-203ENST00000436177 EIF4A2Q14240 407 aaKnown RBP10.6□□□□□ -0.71
VPS50-203ENST00000436177 NKX1-1Q15270 411 aaPredicted RBP10.6□□□□□ -0.71
VPS50-203ENST00000436177 MORC1Q86VD1 984 aa10.6□□□□□ -0.71
VPS50-203ENST00000436177 PANK3Q9H999 370 aa10.6□□□□□ -0.71
VPS50-203ENST00000436177 PLEKHG2Q9H7P9 1386 aa10.6□□□□□ -0.71
VPS50-203ENST00000436177 GNPATO15228 680 aa10.59□□□□□ -0.71
VPS50-203ENST00000436177 SSFA2P28290 1259 aa10.59□□□□□ -0.71
VPS50-203ENST00000436177 DCAF8Q5TAQ9 597 aa10.59□□□□□ -0.71
VPS50-203ENST00000436177 TMEM106CQ9BVX2 250 aa10.59□□□□□ -0.71
VPS50-203ENST00000436177 KNSTRNQ9Y448 316 aa10.59□□□□□ -0.71
VPS50-203ENST00000436177 CD2APQ9Y5K6 639 aa10.59□□□□□ -0.71
VPS50-203ENST00000436177 C5P01031 1676 aa10.59□□□□□ -0.71
VPS50-203ENST00000436177 PKD1L3Q7Z443 1732 aa10.58□□□□□ -0.72
VPS50-203ENST00000436177 UTRNP46939 3433 aa10.58□□□□□ -0.72
VPS50-203ENST00000436177 GIGYF1O75420 1035 aaPredicted RBP10.58□□□□□ -0.72
VPS50-203ENST00000436177 ATP6V1AP38606 617 aa10.58□□□□□ -0.72
VPS50-203ENST00000436177 PLEKHO1Q53GL0 409 aaPredicted RBP10.58□□□□□ -0.72
VPS50-203ENST00000436177 C1orf141Q5JVX7 400 aa10.58□□□□□ -0.72
VPS50-203ENST00000436177 ZNF530Q6P9A1 599 aaPredicted RBP10.58□□□□□ -0.72
VPS50-203ENST00000436177 ANKRD26Q9UPS8 1709 aa10.58□□□□□ -0.72
VPS50-203ENST00000436177 TUBGCP6Q96RT7 1819 aa10.57□□□□□ -0.72
VPS50-203ENST00000436177 SENP3-EIF4A1A0A087X0R7 540 aa10.57□□□□□ -0.72
VPS50-203ENST00000436177 AMOTQ4VCS5 1084 aa10.57□□□□□ -0.72
VPS50-203ENST00000436177 DCAF5Q96JK2 942 aa10.57□□□□□ -0.72
VPS50-203ENST00000436177 ASAP1Q9ULH1 1129 aa10.57□□□□□ -0.72
VPS50-203ENST00000436177 IGSF1Q8N6C5 1336 aa10.57□□□□□ -0.72
VPS50-203ENST00000436177 C4BP0C0L5 1744 aa10.56□□□□□ -0.72
VPS50-203ENST00000436177 ERVV-2B6SEH9 535 aa10.56□□□□□ -0.72
VPS50-203ENST00000436177 PYGBP11216 843 aa10.56□□□□□ -0.72
VPS50-203ENST00000436177 YBX3P16989 372 aaKnown RBP eCLIP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms