RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 PLEKHM2Q8IWE5 1019 aa20.8■□□□□ 0.92
LIMK1-203ENST00000435201 GNAI2P04899 355 aa20.79■□□□□ 0.92
LIMK1-203ENST00000435201 NCOA3Q9Y6Q9 1424 aa20.79■□□□□ 0.92
LIMK1-203ENST00000435201 CDC45O75419 566 aa20.79■□□□□ 0.92
LIMK1-203ENST00000435201 GNAI3P08754 354 aa20.79■□□□□ 0.92
LIMK1-203ENST00000435201 LRRC59Q96AG4 307 aaKnown RBP20.79■□□□□ 0.92
LIMK1-203ENST00000435201 LMTK3Q96Q04 1460 aa20.78■□□□□ 0.92
LIMK1-203ENST00000435201 HDGFL1Q5TGJ6 251 aa20.78■□□□□ 0.92
LIMK1-203ENST00000435201 LMOD2Q6P5Q4 547 aa20.78■□□□□ 0.92
LIMK1-203ENST00000435201 ZNF530Q6P9A1 599 aaPredicted RBP20.78■□□□□ 0.92
LIMK1-203ENST00000435201 ANKRD24Q8TF21 1146 aa20.78■□□□□ 0.92
LIMK1-203ENST00000435201 TBC1D9Q6ZT07 1266 aa20.77■□□□□ 0.92
LIMK1-203ENST00000435201 TTC22Q5TAA0 569 aa20.77■□□□□ 0.92
LIMK1-203ENST00000435201 EIF4A1P60842 406 aaKnown RBP20.76■□□□□ 0.91
LIMK1-203ENST00000435201 TEFQ10587 303 aa20.76■□□□□ 0.91
LIMK1-203ENST00000435201 GSPT1P15170 499 aaKnown RBP20.75■□□□□ 0.91
LIMK1-203ENST00000435201 ATF3P18847 181 aa20.75■□□□□ 0.91
LIMK1-203ENST00000435201 C1orf141Q5JVX7 400 aa20.75■□□□□ 0.91
LIMK1-203ENST00000435201 NECTIN2Q92692 538 aa20.75■□□□□ 0.91
LIMK1-203ENST00000435201 LGR6Q9HBX8 967 aa20.75■□□□□ 0.91
LIMK1-203ENST00000435201 ANTXR1Q9H6X2 564 aa20.75■□□□□ 0.91
LIMK1-203ENST00000435201 STRCP1A6NGW2 1772 aa20.74■□□□□ 0.91
LIMK1-203ENST00000435201 TMEM94Q12767 1356 aa20.74■□□□□ 0.91
LIMK1-203ENST00000435201 PXDNQ92626 1479 aa20.74■□□□□ 0.91
LIMK1-203ENST00000435201 HSCBQ8IWL3 235 aa20.73■□□□□ 0.91
LIMK1-203ENST00000435201 SLKQ9H2G2 1235 aaPredicted RBP20.73■□□□□ 0.91
LIMK1-203ENST00000435201 RGPD5Q99666 1765 aa20.73■□□□□ 0.91
LIMK1-203ENST00000435201 ADAMTS7Q9UKP4 1686 aa20.72■□□□□ 0.91
LIMK1-203ENST00000435201 BTBD11A6QL63 1104 aa20.72■□□□□ 0.91
LIMK1-203ENST00000435201 RNMTO43148 476 aaKnown RBP20.72■□□□□ 0.91
LIMK1-203ENST00000435201 SNX21Q969T3 373 aa20.72■□□□□ 0.91
LIMK1-203ENST00000435201 C16orf71Q8IYS4 520 aaPredicted RBP20.71■□□□□ 0.91
LIMK1-203ENST00000435201 SIPA1L3O60292 1781 aaPredicted RBP20.71■□□□□ 0.91
LIMK1-203ENST00000435201 MPRIPQ6WCQ1 1025 aa20.71■□□□□ 0.91
LIMK1-203ENST00000435201 ERBB3P21860 1342 aa20.7■□□□□ 0.9
LIMK1-203ENST00000435201 FRAT2O75474 233 aaPredicted RBP20.7■□□□□ 0.9
LIMK1-203ENST00000435201 ATP8B2P98198 1209 aa20.7■□□□□ 0.9
LIMK1-203ENST00000435201 AXIN2Q9Y2T1 843 aa20.7■□□□□ 0.9
LIMK1-203ENST00000435201 ABCC6O95255 1503 aa20.69■□□□□ 0.9
LIMK1-203ENST00000435201 SMARCA5O60264 1052 aaPredicted RBP20.69■□□□□ 0.9
LIMK1-203ENST00000435201 PLEKHG5O94827 1062 aa20.69■□□□□ 0.9
LIMK1-203ENST00000435201 DNAJC5Q9H3Z4 198 aa20.69■□□□□ 0.9
LIMK1-203ENST00000435201 OSBPL3Q9H4L5 887 aa20.69■□□□□ 0.9
LIMK1-203ENST00000435201 APBB1O00213 710 aa20.68■□□□□ 0.9
LIMK1-203ENST00000435201 EIF2S2P20042 333 aaKnown RBP20.68■□□□□ 0.9
LIMK1-203ENST00000435201 CASC1Q6TDU7 716 aa20.68■□□□□ 0.9
LIMK1-203ENST00000435201 OTUD7AQ8TE49 926 aaPredicted RBP20.68■□□□□ 0.9
LIMK1-203ENST00000435201 PHAXQ9H814 394 aaKnown RBP20.68■□□□□ 0.9
LIMK1-203ENST00000435201 UBTFL1P0CB47 393 aaPredicted RBP20.67■□□□□ 0.9
LIMK1-203ENST00000435201 CADPS2Q86UW7 1296 aa20.67■□□□□ 0.9
LIMK1-203ENST00000435201 SRCIN1Q9C0H9 1055 aa20.67■□□□□ 0.9
LIMK1-203ENST00000435201 USP44Q9H0E7 712 aa20.67■□□□□ 0.9
LIMK1-203ENST00000435201 CHPF2Q9P2E5 772 aa20.67■□□□□ 0.9
LIMK1-203ENST00000435201 NPHP3Q7Z494 1330 aa20.66■□□□□ 0.9
LIMK1-203ENST00000435201 PLEKHG2Q9H7P9 1386 aa20.66■□□□□ 0.9
LIMK1-203ENST00000435201 CRYBG1Q9Y4K1 1723 aa20.66■□□□□ 0.9
LIMK1-203ENST00000435201 LRRFIP2Q9Y608 721 aaKnown RBP20.66■□□□□ 0.9
LIMK1-203ENST00000435201 COL18A1P39060 1754 aa20.66■□□□□ 0.9
LIMK1-203ENST00000435201 TNS3Q68CZ2 1445 aa20.66■□□□□ 0.9
LIMK1-203ENST00000435201 KCNQ3O43525 872 aa20.65■□□□□ 0.9
LIMK1-203ENST00000435201 SDSP20132 328 aa20.65■□□□□ 0.9
LIMK1-203ENST00000435201 KIF2CQ99661 725 aa20.65■□□□□ 0.9
LIMK1-203ENST00000435201 LRRCC1Q9C099 1032 aa20.65■□□□□ 0.9
LIMK1-203ENST00000435201 IBTKQ9P2D0 1353 aaPredicted RBP20.65■□□□□ 0.9
LIMK1-203ENST00000435201 HEG1Q9ULI3 1381 aa20.65■□□□□ 0.9
LIMK1-203ENST00000435201 ZC3H6P61129 1189 aaKnown RBP20.64■□□□□ 0.9
LIMK1-203ENST00000435201 PNMA6EA0A0J9YXQ4 647 aa20.64■□□□□ 0.89
LIMK1-203ENST00000435201 DNAAF4Q8WXU2 420 aa20.64■□□□□ 0.89
LIMK1-203ENST00000435201 BCL11AQ9H165 835 aa20.64■□□□□ 0.89
LIMK1-203ENST00000435201 CHMP5Q9NZZ3 219 aa20.64■□□□□ 0.89
LIMK1-203ENST00000435201 DBF4Q9UBU7 674 aaPredicted RBP20.64■□□□□ 0.89
LIMK1-203ENST00000435201 EXOC6BQ9Y2D4 811 aa20.64■□□□□ 0.89
LIMK1-203ENST00000435201 PDE1AP54750 535 aa20.63■□□□□ 0.89
LIMK1-203ENST00000435201 RAPGEF4Q8WZA2 1011 aa20.63■□□□□ 0.89
LIMK1-203ENST00000435201 SCN11AQ9UI33 1791 aa20.63■□□□□ 0.89
LIMK1-203ENST00000435201 GSE1Q14687 1217 aa20.62■□□□□ 0.89
LIMK1-203ENST00000435201 TUBGCP6Q96RT7 1819 aa20.62■□□□□ 0.89
LIMK1-203ENST00000435201 SALL3Q9BXA9 1300 aa20.62■□□□□ 0.89
LIMK1-203ENST00000435201 GIGYF1O75420 1035 aaPredicted RBP20.61■□□□□ 0.89
LIMK1-203ENST00000435201 BEND3Q5T5X7 828 aa20.61■□□□□ 0.89
LIMK1-203ENST00000435201 SSH3Q8TE77 659 aa20.61■□□□□ 0.89
LIMK1-203ENST00000435201 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.6■□□□□ 0.89
LIMK1-203ENST00000435201 PI4KAP2A4QPH2 592 aa20.6■□□□□ 0.89
LIMK1-203ENST00000435201 TATP17735 454 aaPredicted RBP20.6■□□□□ 0.89
LIMK1-203ENST00000435201 PI4KAP1Q8N8J0 262 aa20.6■□□□□ 0.89
LIMK1-203ENST00000435201 SPRYD3Q8NCJ5 442 aa20.6■□□□□ 0.89
LIMK1-203ENST00000435201 NLRP2Q9NX02 1062 aa20.6■□□□□ 0.89
LIMK1-203ENST00000435201 ADCY9O60503 1353 aa20.59■□□□□ 0.89
LIMK1-203ENST00000435201 HSP90AB1P08238 724 aaKnown RBP20.59■□□□□ 0.89
LIMK1-203ENST00000435201 SPG7Q9UQ90 795 aa20.59■□□□□ 0.89
LIMK1-203ENST00000435201 XIRP1Q702N8 1843 aaKnown RBP20.58■□□□□ 0.89
LIMK1-203ENST00000435201 RAB11FIP3O75154 756 aa20.58■□□□□ 0.89
LIMK1-203ENST00000435201 REC8O95072 547 aa20.58■□□□□ 0.89
LIMK1-203ENST00000435201 MX1P20591 662 aa20.58■□□□□ 0.89
LIMK1-203ENST00000435201 DDX17Q92841 729 aaKnown RBP20.58■□□□□ 0.89
LIMK1-203ENST00000435201 USP26Q9BXU7 913 aa20.58■□□□□ 0.89
LIMK1-203ENST00000435201 AOX1Q06278 1338 aa20.58■□□□□ 0.88
LIMK1-203ENST00000435201 POLA2Q14181 598 aa20.58■□□□□ 0.88
LIMK1-203ENST00000435201 RABEP1Q15276 862 aa20.58■□□□□ 0.88
LIMK1-203ENST00000435201 SPATA31A3Q5VYP0 1347 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms