RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SRCIN1Q9C0H9 1055 aa16.8■□□□□ 0.28
COL6A3-207ENST00000433762 MAP3K5Q99683 1374 aa16.8■□□□□ 0.28
COL6A3-207ENST00000433762 GNAT3A8MTJ3 354 aa16.79■□□□□ 0.28
COL6A3-207ENST00000433762 C16orf71Q8IYS4 520 aaPredicted RBP16.79■□□□□ 0.28
COL6A3-207ENST00000433762 NGDNQ8NEJ9 315 aaKnown RBP16.79■□□□□ 0.28
COL6A3-207ENST00000433762 RBM42Q9BTD8 480 aaKnown RBP16.79■□□□□ 0.28
COL6A3-207ENST00000433762 MCM2P49736 904 aa16.79■□□□□ 0.28
COL6A3-207ENST00000433762 PDE1AP54750 535 aa16.79■□□□□ 0.28
COL6A3-207ENST00000433762 GZF1Q9H116 711 aaPredicted RBP16.78■□□□□ 0.28
COL6A3-207ENST00000433762 LTN1O94822 1766 aa16.77■□□□□ 0.28
COL6A3-207ENST00000433762 BAG4O95429 457 aaKnown RBP16.77■□□□□ 0.28
COL6A3-207ENST00000433762 ANAPC15P60006 121 aa16.77■□□□□ 0.28
COL6A3-207ENST00000433762 ATP8B2P98198 1209 aa16.77■□□□□ 0.28
COL6A3-207ENST00000433762 STAP2Q9UGK3 403 aa16.77■□□□□ 0.28
COL6A3-207ENST00000433762 KDM3BQ7LBC6 1761 aa16.77■□□□□ 0.28
COL6A3-207ENST00000433762 ZNF142P52746 1687 aaPredicted RBP16.77■□□□□ 0.27
COL6A3-207ENST00000433762 FLIIQ13045 1269 aa16.77■□□□□ 0.27
COL6A3-207ENST00000433762 OTUD7AQ8TE49 926 aaPredicted RBP16.77■□□□□ 0.27
COL6A3-207ENST00000433762 SLC26A8Q96RN1 970 aa16.77■□□□□ 0.27
COL6A3-207ENST00000433762 HOXC9P31274 260 aa16.76■□□□□ 0.27
COL6A3-207ENST00000433762 G2E3Q7L622 706 aa16.76■□□□□ 0.27
COL6A3-207ENST00000433762 ADGRL3Q9HAR2 1447 aa16.76■□□□□ 0.27
COL6A3-207ENST00000433762 FOXO3O43524 673 aa16.75■□□□□ 0.27
COL6A3-207ENST00000433762 HOXB7P09629 217 aa16.75■□□□□ 0.27
COL6A3-207ENST00000433762 SSFA2P28290 1259 aa16.75■□□□□ 0.27
COL6A3-207ENST00000433762 CLCN1P35523 988 aa16.75■□□□□ 0.27
COL6A3-207ENST00000433762 LRRCC1Q9C099 1032 aa16.75■□□□□ 0.27
COL6A3-207ENST00000433762 LMO7Q8WWI1 1683 aa16.75■□□□□ 0.27
COL6A3-207ENST00000433762 CHD2O14647 1828 aaKnown RBP16.75■□□□□ 0.27
COL6A3-207ENST00000433762 KDM4FA0A1W2PPD8 638 aa16.74■□□□□ 0.27
COL6A3-207ENST00000433762 TAF7Q15545 349 aaPredicted RBP16.74■□□□□ 0.27
COL6A3-207ENST00000433762 SMARCA5O60264 1052 aaPredicted RBP16.74■□□□□ 0.27
COL6A3-207ENST00000433762 CEMIPQ8WUJ3 1361 aa16.74■□□□□ 0.27
COL6A3-207ENST00000433762 MCCP23508 829 aa16.73■□□□□ 0.27
COL6A3-207ENST00000433762 PANK2Q9BZ23 570 aa16.73■□□□□ 0.27
COL6A3-207ENST00000433762 RRAGDQ9NQL2 400 aaPredicted RBP16.73■□□□□ 0.27
COL6A3-207ENST00000433762 AK9Q5TCS8 1911 aa16.73■□□□□ 0.27
COL6A3-207ENST00000433762 LMTK3Q96Q04 1460 aa16.73■□□□□ 0.27
COL6A3-207ENST00000433762 ZNF445P59923 1031 aa16.73■□□□□ 0.27
COL6A3-207ENST00000433762 NFAT5O94916 1531 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 NUTM2FA1L443 756 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 MX1P20591 662 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 NLRP6P59044 892 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 SLC4A10Q6U841 1118 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 OVOS2A0A0G2JMS6 1433 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 F6X3S4 739 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 RAB11FIP3O75154 756 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 ESYT1Q9BSJ8 1104 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 MIS18AQ9NYP9 233 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 CRYBG1Q9Y4K1 1723 aa16.72■□□□□ 0.27
COL6A3-207ENST00000433762 FKBP5Q13451 457 aaPredicted RBP16.71■□□□□ 0.27
COL6A3-207ENST00000433762 SSH3Q8TE77 659 aa16.7■□□□□ 0.26
COL6A3-207ENST00000433762 INTS4Q96HW7 963 aaKnown RBP16.7■□□□□ 0.26
COL6A3-207ENST00000433762 ANKLE2Q86XL3 938 aa16.7■□□□□ 0.26
COL6A3-207ENST00000433762 IL17REQ8NFR9 667 aa16.7■□□□□ 0.26
COL6A3-207ENST00000433762 DDX49Q9Y6V7 483 aaKnown RBP16.7■□□□□ 0.26
COL6A3-207ENST00000433762 NCAPD2Q15021 1401 aa16.69■□□□□ 0.26
COL6A3-207ENST00000433762 CCDC173Q0VFZ6 552 aa16.69■□□□□ 0.26
COL6A3-207ENST00000433762 CUL4AQ13619 759 aa16.69■□□□□ 0.26
COL6A3-207ENST00000433762 PPP1R9BQ96SB3 815 aa16.69■□□□□ 0.26
COL6A3-207ENST00000433762 GAS2L3Q86XJ1 694 aa16.69■□□□□ 0.26
COL6A3-207ENST00000433762 FOXD4L1Q9NU39 408 aa16.69■□□□□ 0.26
COL6A3-207ENST00000433762 ANO8Q9HCE9 1232 aaPredicted RBP16.68■□□□□ 0.26
COL6A3-207ENST00000433762 LMBRD1Q9NUN5 540 aa16.68■□□□□ 0.26
COL6A3-207ENST00000433762 CAMTA1Q9Y6Y1 1673 aa16.68■□□□□ 0.26
COL6A3-207ENST00000433762 SOX12O15370 315 aa16.67■□□□□ 0.26
COL6A3-207ENST00000433762 CHMLP26374 656 aa16.67■□□□□ 0.26
COL6A3-207ENST00000433762 POLA2Q14181 598 aa16.67■□□□□ 0.26
COL6A3-207ENST00000433762 UBTFL1P0CB47 393 aaPredicted RBP16.67■□□□□ 0.26
COL6A3-207ENST00000433762 IP6K1Q92551 441 aa16.67■□□□□ 0.26
COL6A3-207ENST00000433762 USP44Q9H0E7 712 aa16.67■□□□□ 0.26
COL6A3-207ENST00000433762 EXOC6BQ9Y2D4 811 aa16.67■□□□□ 0.26
COL6A3-207ENST00000433762 PNMA6EA0A0J9YXQ4 647 aa16.66■□□□□ 0.26
COL6A3-207ENST00000433762 APBB1O00213 710 aa16.66■□□□□ 0.26
COL6A3-207ENST00000433762 ANP32BQ92688 251 aaKnown RBP16.65■□□□□ 0.26
COL6A3-207ENST00000433762 ESPNB1AK53 854 aa16.65■□□□□ 0.26
COL6A3-207ENST00000433762 HSP90AB4PQ58FF6 505 aa16.65■□□□□ 0.26
COL6A3-207ENST00000433762 HDGFL1Q5TGJ6 251 aa16.65■□□□□ 0.26
COL6A3-207ENST00000433762 ABTB2Q8N961 1025 aa16.65■□□□□ 0.26
COL6A3-207ENST00000433762 TRIM44Q96DX7 344 aaPredicted RBP16.65■□□□□ 0.26
COL6A3-207ENST00000433762 LRRFIP2Q9Y608 721 aaKnown RBP16.65■□□□□ 0.26
COL6A3-207ENST00000433762 KCNA6P17658 529 aa16.64■□□□□ 0.25
COL6A3-207ENST00000433762 USP42Q9H9J4 1324 aaKnown RBP16.64■□□□□ 0.25
COL6A3-207ENST00000433762 MBD3O95983 291 aa16.64■□□□□ 0.25
COL6A3-207ENST00000433762 HS1BP3Q53T59 392 aa16.64■□□□□ 0.25
COL6A3-207ENST00000433762 MCTP1Q6DN14 999 aa16.64■□□□□ 0.25
COL6A3-207ENST00000433762 KCNH5Q8NCM2 988 aa16.64■□□□□ 0.25
COL6A3-207ENST00000433762 TMX3Q96JJ7 454 aa16.64■□□□□ 0.25
COL6A3-207ENST00000433762 ADAMTS7Q9UKP4 1686 aa16.64■□□□□ 0.25
COL6A3-207ENST00000433762 NASPP49321 788 aaPredicted RBP16.63■□□□□ 0.25
COL6A3-207ENST00000433762 KLHL34Q8N239 644 aa16.63■□□□□ 0.25
COL6A3-207ENST00000433762 HDAC5Q9UQL6 1122 aa16.63■□□□□ 0.25
COL6A3-207ENST00000433762 SLIT3O75094 1523 aa16.63■□□□□ 0.25
COL6A3-207ENST00000433762 NEK4P51957 841 aa16.63■□□□□ 0.25
COL6A3-207ENST00000433762 PHF8Q9UPP1 1060 aa16.63■□□□□ 0.25
COL6A3-207ENST00000433762 ZDHHC9Q9Y397 364 aa16.63■□□□□ 0.25
COL6A3-207ENST00000433762 SIPA1L3O60292 1781 aaPredicted RBP16.62■□□□□ 0.25
COL6A3-207ENST00000433762 KIF1BPQ96EK5 621 aa16.62■□□□□ 0.25
COL6A3-207ENST00000433762 BRD1O95696 1058 aa16.62■□□□□ 0.25
COL6A3-207ENST00000433762 EIF4A1P60842 406 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms