RNA–Protein interactions for RNA: ENST00000428404.5

TRIM39-207, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 427 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-207ENST00000428404 EXOSC9Q06265 439 aaKnown RBP16.22■□□□□ 0.19
TRIM39-207ENST00000428404 SEPT12Q8IYM1 358 aa16.22■□□□□ 0.19
TRIM39-207ENST00000428404 CT47B1P0C2W7 299 aaPredicted RBP16.21■□□□□ 0.19
TRIM39-207ENST00000428404 CABP4P57796 275 aa16.21■□□□□ 0.19
TRIM39-207ENST00000428404 BTBD11A6QL63 1104 aa16.2■□□□□ 0.18
TRIM39-207ENST00000428404 C8orf58Q8NAV2 365 aa16.2■□□□□ 0.18
TRIM39-207ENST00000428404 SIPA1L3O60292 1781 aaPredicted RBP16.2■□□□□ 0.18
TRIM39-207ENST00000428404 POTEAQ6S8J7 498 aa16.19■□□□□ 0.18
TRIM39-207ENST00000428404 BCL9O00512 1426 aa16.19■□□□□ 0.18
TRIM39-207ENST00000428404 VIRMAQ69YN4 1812 aaKnown RBP16.18■□□□□ 0.18
TRIM39-207ENST00000428404 A0A0G2JS52 829 aa16.18■□□□□ 0.18
TRIM39-207ENST00000428404 KCNQ3O43525 872 aa16.18■□□□□ 0.18
TRIM39-207ENST00000428404 VAMP4O75379 141 aa16.18■□□□□ 0.18
TRIM39-207ENST00000428404 RXRBP28702 533 aa16.18■□□□□ 0.18
TRIM39-207ENST00000428404 EIF4A1P60842 406 aaKnown RBP16.18■□□□□ 0.18
TRIM39-207ENST00000428404 MYT1Q01538 1121 aa16.18■□□□□ 0.18
TRIM39-207ENST00000428404 TSPYL6Q8N831 410 aa16.18■□□□□ 0.18
TRIM39-207ENST00000428404 RCAN3Q9UKA8 241 aa16.18■□□□□ 0.18
TRIM39-207ENST00000428404 TOGARAM1Q9Y4F4 1720 aa16.17■□□□□ 0.18
TRIM39-207ENST00000428404 HEG1Q9ULI3 1381 aa16.17■□□□□ 0.18
TRIM39-207ENST00000428404 ZNF790Q6PG37 636 aa16.17■□□□□ 0.18
TRIM39-207ENST00000428404 PIGBQ92521 554 aa16.17■□□□□ 0.18
TRIM39-207ENST00000428404 PRIM1P49642 420 aaKnown RBP16.16■□□□□ 0.18
TRIM39-207ENST00000428404 KRT24Q2M2I5 525 aa16.16■□□□□ 0.18
TRIM39-207ENST00000428404 ZNF428Q96B54 188 aa16.16■□□□□ 0.18
TRIM39-207ENST00000428404 SOS1Q07889 1333 aaPredicted RBP16.16■□□□□ 0.18
TRIM39-207ENST00000428404 SLC39A6Q13433 755 aa16.15■□□□□ 0.18
TRIM39-207ENST00000428404 TWISTNBQ3B726 338 aaPredicted RBP16.15■□□□□ 0.18
TRIM39-207ENST00000428404 TMOD3Q9NYL9 352 aa16.15■□□□□ 0.18
TRIM39-207ENST00000428404 KDM3BQ7LBC6 1761 aa16.15■□□□□ 0.18
TRIM39-207ENST00000428404 RNF123Q5XPI4 1314 aa16.15■□□□□ 0.18
TRIM39-207ENST00000428404 RARSP54136 660 aaKnown RBP16.14■□□□□ 0.17
TRIM39-207ENST00000428404 ELL2O00472 640 aaPredicted RBP16.13■□□□□ 0.17
TRIM39-207ENST00000428404 HOXB7P09629 217 aa16.13■□□□□ 0.17
TRIM39-207ENST00000428404 KRT27Q7Z3Y8 459 aa16.13■□□□□ 0.17
TRIM39-207ENST00000428404 GIGYF1O75420 1035 aaPredicted RBP16.12■□□□□ 0.17
TRIM39-207ENST00000428404 ZNF496Q96IT1 587 aaPredicted RBP16.12■□□□□ 0.17
TRIM39-207ENST00000428404 ATG3Q9NT62 314 aa16.12■□□□□ 0.17
TRIM39-207ENST00000428404 ASAP1Q9ULH1 1129 aa16.12■□□□□ 0.17
TRIM39-207ENST00000428404 KCNQ2O43526 872 aa16.11■□□□□ 0.17
TRIM39-207ENST00000428404 BRPF1P55201 1214 aaPredicted RBP16.11■□□□□ 0.17
TRIM39-207ENST00000428404 ALDH1L2Q3SY69 923 aa16.11■□□□□ 0.17
TRIM39-207ENST00000428404 FAM182BQ5T319 152 aa16.11■□□□□ 0.17
TRIM39-207ENST00000428404 SSH1Q8WYL5 1049 aa16.11■□□□□ 0.17
TRIM39-207ENST00000428404 ACSBG1Q96GR2 724 aa16.11■□□□□ 0.17
TRIM39-207ENST00000428404 SUPT16HQ9Y5B9 1047 aaKnown RBP16.11■□□□□ 0.17
TRIM39-207ENST00000428404 ITGB4P16144 1822 aa16.1■□□□□ 0.17
TRIM39-207ENST00000428404 FAM196AQ6ZSG2 479 aa16.1■□□□□ 0.17
TRIM39-207ENST00000428404 TTC5Q8N0Z6 440 aa16.1■□□□□ 0.17
TRIM39-207ENST00000428404 SYTL4Q96C24 671 aaPredicted RBP16.1■□□□□ 0.17
TRIM39-207ENST00000428404 FMNL2Q96PY5 1086 aa16.1■□□□□ 0.17
TRIM39-207ENST00000428404 RGS12O14924 1447 aa16.1■□□□□ 0.17
TRIM39-207ENST00000428404 PAPPAQ13219 1627 aa16.09■□□□□ 0.17
TRIM39-207ENST00000428404 DOT1LQ8TEK3 1739 aa16.09■□□□□ 0.17
TRIM39-207ENST00000428404 BCAR3O75815 825 aa16.09■□□□□ 0.17
TRIM39-207ENST00000428404 KCPQ6ZWJ8 1503 aa16.09■□□□□ 0.17
TRIM39-207ENST00000428404 SNRPA1P09661 255 aaKnown RBP16.08■□□□□ 0.16
TRIM39-207ENST00000428404 BRWD3Q6RI45 1802 aa16.08■□□□□ 0.16
TRIM39-207ENST00000428404 PTF1AQ7RTS3 328 aa16.07■□□□□ 0.16
TRIM39-207ENST00000428404 VSIG10Q8N0Z9 540 aa16.07■□□□□ 0.16
TRIM39-207ENST00000428404 MRPL50Q8N5N7 158 aaKnown RBP16.07■□□□□ 0.16
TRIM39-207ENST00000428404 CHMP4AQ9BY43 222 aa16.07■□□□□ 0.16
TRIM39-207ENST00000428404 UBR2Q8IWV8 1755 aa16.07■□□□□ 0.16
TRIM39-207ENST00000428404 PRAMEF22A3QJZ6 481 aa16.06■□□□□ 0.16
TRIM39-207ENST00000428404 RRP1P56182 461 aaKnown RBP16.06■□□□□ 0.16
TRIM39-207ENST00000428404 CCDC30Q5VVM6 783 aa16.06■□□□□ 0.16
TRIM39-207ENST00000428404 BCL11BQ9C0K0 894 aaPredicted RBP16.06■□□□□ 0.16
TRIM39-207ENST00000428404 KAT6BQ8WYB5 2073 aa16.06■□□□□ 0.16
TRIM39-207ENST00000428404 PTCD1O75127 700 aaKnown RBP16.05■□□□□ 0.16
TRIM39-207ENST00000428404 HDGFL1Q5TGJ6 251 aa16.05■□□□□ 0.16
TRIM39-207ENST00000428404 SMARCC1Q92922 1105 aaPredicted RBP16.05■□□□□ 0.16
TRIM39-207ENST00000428404 SLC4A9Q96Q91 983 aa16.05■□□□□ 0.16
TRIM39-207ENST00000428404 BCL2L13Q9BXK5 485 aa16.05■□□□□ 0.16
TRIM39-207ENST00000428404 SMC4Q9NTJ3 1288 aa16.05■□□□□ 0.16
TRIM39-207ENST00000428404 USP16Q9Y5T5 823 aa16.04■□□□□ 0.16
TRIM39-207ENST00000428404 NHSQ6T4R5 1651 aa16.04■□□□□ 0.16
TRIM39-207ENST00000428404 TCERG1O14776 1098 aaKnown RBP16.03■□□□□ 0.16
TRIM39-207ENST00000428404 TEX13AQ9BXU3 409 aaPredicted RBP16.03■□□□□ 0.16
TRIM39-207ENST00000428404 SBF2Q86WG5 1849 aa16.03■□□□□ 0.16
TRIM39-207ENST00000428404 PLIN1O60240 522 aa16.02■□□□□ 0.16
TRIM39-207ENST00000428404 SLC4A2P04920 1241 aa16.02■□□□□ 0.16
TRIM39-207ENST00000428404 EIF2S2P20042 333 aaKnown RBP16.02■□□□□ 0.16
TRIM39-207ENST00000428404 PALLDQ8WX93 1383 aa16.01■□□□□ 0.15
TRIM39-207ENST00000428404 PDIA6Q15084 440 aa16.01■□□□□ 0.15
TRIM39-207ENST00000428404 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.01■□□□□ 0.15
TRIM39-207ENST00000428404 ARHGAP45Q92619 1136 aa16.01■□□□□ 0.15
TRIM39-207ENST00000428404 NECTIN2Q92692 538 aa16.01■□□□□ 0.15
TRIM39-207ENST00000428404 RBM42Q9BTD8 480 aaKnown RBP16.01■□□□□ 0.15
TRIM39-207ENST00000428404 STK31Q9BXU1 1019 aa16.01■□□□□ 0.15
TRIM39-207ENST00000428404 DBF4Q9UBU7 674 aaPredicted RBP16.01■□□□□ 0.15
TRIM39-207ENST00000428404 NOB1Q9ULX3 412 aaKnown RBP16.01■□□□□ 0.15
TRIM39-207ENST00000428404 KIF16BQ96L93 1317 aa16■□□□□ 0.15
TRIM39-207ENST00000428404 LOC102724428A0A0B4J2F2 783 aa16■□□□□ 0.15
TRIM39-207ENST00000428404 SIK1P57059 783 aa16■□□□□ 0.15
TRIM39-207ENST00000428404 DNAJC10Q8IXB1 793 aa16■□□□□ 0.15
TRIM39-207ENST00000428404 CHPF2Q9P2E5 772 aa16■□□□□ 0.15
TRIM39-207ENST00000428404 EP400Q96L91 3159 aa16■□□□□ 0.15
TRIM39-207ENST00000428404 ERBB4Q15303 1308 aa15.99■□□□□ 0.15
TRIM39-207ENST00000428404 C5P01031 1676 aa15.99■□□□□ 0.15
TRIM39-207ENST00000428404 IPO8O15397 1037 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms