RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 TNS3Q68CZ2 1445 aa13.05□□□□□ -0.32
HDAC9-210ENST00000428307 RGPD2P0DJD1 1756 aa13.05□□□□□ -0.32
HDAC9-210ENST00000428307 PHAXQ9H814 394 aaKnown RBP13.05□□□□□ -0.32
HDAC9-210ENST00000428307 PXDNQ92626 1479 aa13.04□□□□□ -0.32
HDAC9-210ENST00000428307 CCT4P50991 539 aaKnown RBP13.03□□□□□ -0.32
HDAC9-210ENST00000428307 DDRGK1Q96HY6 314 aa13.03□□□□□ -0.32
HDAC9-210ENST00000428307 APBB1O00213 710 aa13.03□□□□□ -0.32
HDAC9-210ENST00000428307 CEP85Q6P2H3 762 aa13.03□□□□□ -0.32
HDAC9-210ENST00000428307 ANKRD44Q8N8A2 993 aa13.03□□□□□ -0.32
HDAC9-210ENST00000428307 PHRF1Q9P1Y6 1649 aaKnown RBP13.02□□□□□ -0.32
HDAC9-210ENST00000428307 ANXA1P04083 346 aa13.02□□□□□ -0.32
HDAC9-210ENST00000428307 TATP17735 454 aaPredicted RBP13.02□□□□□ -0.32
HDAC9-210ENST00000428307 RPAP2Q8IXW5 612 aaPredicted RBP13.02□□□□□ -0.32
HDAC9-210ENST00000428307 LRRC37A3O60309 1634 aa13.02□□□□□ -0.33
HDAC9-210ENST00000428307 DCTPP1Q9H773 170 aa13.02□□□□□ -0.33
HDAC9-210ENST00000428307 CHPF2Q9P2E5 772 aa13.02□□□□□ -0.33
HDAC9-210ENST00000428307 SOS1Q07889 1333 aaPredicted RBP13.02□□□□□ -0.33
HDAC9-210ENST00000428307 NCAPD2Q15021 1401 aa13.02□□□□□ -0.33
HDAC9-210ENST00000428307 ALS2Q96Q42 1657 aa13.02□□□□□ -0.33
HDAC9-210ENST00000428307 UPF2Q9HAU5 1272 aaKnown RBP13.01□□□□□ -0.33
HDAC9-210ENST00000428307 PRDM11Q9NQV5 511 aa13.01□□□□□ -0.33
HDAC9-210ENST00000428307 PRAMEF22A3QJZ6 481 aa13□□□□□ -0.33
HDAC9-210ENST00000428307 DAXXQ9UER7 740 aaPredicted RBP13□□□□□ -0.33
HDAC9-210ENST00000428307 ATP10DQ9P241 1426 aa13□□□□□ -0.33
HDAC9-210ENST00000428307 SLC39A6Q13433 755 aa13□□□□□ -0.33
HDAC9-210ENST00000428307 C16orf71Q8IYS4 520 aaPredicted RBP13□□□□□ -0.33
HDAC9-210ENST00000428307 SPG7Q9UQ90 795 aa13□□□□□ -0.33
HDAC9-210ENST00000428307 STRCQ7RTU9 1775 aa13□□□□□ -0.33
HDAC9-210ENST00000428307 GNAI2P04899 355 aa12.99□□□□□ -0.33
HDAC9-210ENST00000428307 NFATC2IPQ8NCF5 419 aa12.99□□□□□ -0.33
HDAC9-210ENST00000428307 SOS2Q07890 1332 aaPredicted RBP12.99□□□□□ -0.33
HDAC9-210ENST00000428307 GIGYF1O75420 1035 aaPredicted RBP12.99□□□□□ -0.33
HDAC9-210ENST00000428307 PHKG2P15735 406 aa12.99□□□□□ -0.33
HDAC9-210ENST00000428307 MFAP1P55081 439 aaKnown RBP12.99□□□□□ -0.33
HDAC9-210ENST00000428307 SMARCA5O60264 1052 aaPredicted RBP12.98□□□□□ -0.33
HDAC9-210ENST00000428307 HOXB7P09629 217 aa12.98□□□□□ -0.33
HDAC9-210ENST00000428307 NBR1Q14596 966 aa12.98□□□□□ -0.33
HDAC9-210ENST00000428307 RGPD5Q99666 1765 aa12.98□□□□□ -0.33
HDAC9-210ENST00000428307 PI4KAP2A4QPH2 592 aa12.98□□□□□ -0.33
HDAC9-210ENST00000428307 PI4KAP1Q8N8J0 262 aa12.98□□□□□ -0.33
HDAC9-210ENST00000428307 CYP27B1O15528 508 aa12.97□□□□□ -0.33
HDAC9-210ENST00000428307 GNAI3P08754 354 aa12.97□□□□□ -0.33
HDAC9-210ENST00000428307 TOM1L2Q6ZVM7 507 aa12.97□□□□□ -0.33
HDAC9-210ENST00000428307 IFNL2Q8IZJ0 200 aa12.97□□□□□ -0.33
HDAC9-210ENST00000428307 USP44Q9H0E7 712 aa12.97□□□□□ -0.33
HDAC9-210ENST00000428307 MEGF6O75095 1541 aa12.97□□□□□ -0.33
HDAC9-210ENST00000428307 HMMRO75330 724 aa12.96□□□□□ -0.33
HDAC9-210ENST00000428307 PROSER3Q2NL68 480 aa12.96□□□□□ -0.33
HDAC9-210ENST00000428307 SLC52A2Q9HAB3 445 aa12.96□□□□□ -0.33
HDAC9-210ENST00000428307 DBF4Q9UBU7 674 aaPredicted RBP12.96□□□□□ -0.33
HDAC9-210ENST00000428307 CPDO75976 1380 aa12.96□□□□□ -0.33
HDAC9-210ENST00000428307 BMP2KLQ5H9B9 411 aa12.96□□□□□ -0.33
HDAC9-210ENST00000428307 ZNF790Q6PG37 636 aa12.96□□□□□ -0.33
HDAC9-210ENST00000428307 OTUD7AQ8TE49 926 aaPredicted RBP12.96□□□□□ -0.33
HDAC9-210ENST00000428307 TBC1D32Q96NH3 1257 aa12.96□□□□□ -0.33
HDAC9-210ENST00000428307 CHMP4AQ9BY43 222 aa12.96□□□□□ -0.33
HDAC9-210ENST00000428307 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.96□□□□□ -0.33
HDAC9-210ENST00000428307 LRRFIP2Q9Y608 721 aaKnown RBP12.96□□□□□ -0.33
HDAC9-210ENST00000428307 XIRP1Q702N8 1843 aaKnown RBP12.95□□□□□ -0.34
HDAC9-210ENST00000428307 PNMA6EA0A0J9YXQ4 647 aa12.95□□□□□ -0.34
HDAC9-210ENST00000428307 PLEKHM2Q8IWE5 1019 aa12.95□□□□□ -0.34
HDAC9-210ENST00000428307 SRCIN1Q9C0H9 1055 aa12.95□□□□□ -0.34
HDAC9-210ENST00000428307 UBTFL1P0CB47 393 aaPredicted RBP12.95□□□□□ -0.34
HDAC9-210ENST00000428307 DNAAF4Q8WXU2 420 aa12.95□□□□□ -0.34
HDAC9-210ENST00000428307 STRN4Q9NRL3 753 aa12.95□□□□□ -0.34
HDAC9-210ENST00000428307 EXOC6BQ9Y2D4 811 aa12.95□□□□□ -0.34
HDAC9-210ENST00000428307 DCAF5Q96JK2 942 aa12.94□□□□□ -0.34
HDAC9-210ENST00000428307 LMO7Q8WWI1 1683 aa12.94□□□□□ -0.34
HDAC9-210ENST00000428307 KDM6AO15550 1401 aaPredicted RBP12.94□□□□□ -0.34
HDAC9-210ENST00000428307 AIMP1Q12904 312 aaKnown RBP12.93□□□□□ -0.34
HDAC9-210ENST00000428307 C22orf23Q9BZE7 217 aa12.93□□□□□ -0.34
HDAC9-210ENST00000428307 WDR17Q8IZU2 1322 aa12.93□□□□□ -0.34
HDAC9-210ENST00000428307 HEG1Q9ULI3 1381 aa12.93□□□□□ -0.34
HDAC9-210ENST00000428307 NBPF7P0C2Y1 421 aaPredicted RBP12.93□□□□□ -0.34
HDAC9-210ENST00000428307 EVA1CP58658 441 aa12.93□□□□□ -0.34
HDAC9-210ENST00000428307 ATP8B2P98198 1209 aa12.93□□□□□ -0.34
HDAC9-210ENST00000428307 BEND3Q5T5X7 828 aa12.93□□□□□ -0.34
HDAC9-210ENST00000428307 ZNF496Q96IT1 587 aaPredicted RBP12.93□□□□□ -0.34
HDAC9-210ENST00000428307 USP35Q9P2H5 1018 aa12.93□□□□□ -0.34
HDAC9-210ENST00000428307 OVOS2A0A0G2JMS6 1433 aa12.93□□□□□ -0.34
HDAC9-210ENST00000428307 GSPT1P15170 499 aaKnown RBP12.92□□□□□ -0.34
HDAC9-210ENST00000428307 MAP3K2Q9Y2U5 619 aa12.92□□□□□ -0.34
HDAC9-210ENST00000428307 COL18A1P39060 1754 aa12.92□□□□□ -0.34
HDAC9-210ENST00000428307 FAM208AQ9UK61 1670 aaKnown RBP12.92□□□□□ -0.34
HDAC9-210ENST00000428307 CAMTA1Q9Y6Y1 1673 aa12.92□□□□□ -0.34
HDAC9-210ENST00000428307 CABP4P57796 275 aa12.92□□□□□ -0.34
HDAC9-210ENST00000428307 MYL6BP14649 208 aa12.91□□□□□ -0.34
HDAC9-210ENST00000428307 LARP1Q6PKG0 1096 aaKnown RBP12.91□□□□□ -0.34
HDAC9-210ENST00000428307 TBC1D9Q6ZT07 1266 aa12.91□□□□□ -0.34
HDAC9-210ENST00000428307 TTC5Q8N0Z6 440 aa12.91□□□□□ -0.34
HDAC9-210ENST00000428307 ADCY9O60503 1353 aa12.91□□□□□ -0.34
HDAC9-210ENST00000428307 ZCRB1Q8TBF4 217 aaKnown RBP12.91□□□□□ -0.34
HDAC9-210ENST00000428307 DDX54Q8TDD1 881 aaKnown RBP12.91□□□□□ -0.34
HDAC9-210ENST00000428307 HYPKQ9NX55 129 aa12.91□□□□□ -0.34
HDAC9-210ENST00000428307 PIP4K2AP48426 406 aaPredicted RBP12.9□□□□□ -0.34
HDAC9-210ENST00000428307 PDIA6Q15084 440 aa12.9□□□□□ -0.34
HDAC9-210ENST00000428307 USP16Q9Y5T5 823 aa12.9□□□□□ -0.34
HDAC9-210ENST00000428307 KDM3BQ7LBC6 1761 aa12.9□□□□□ -0.35
HDAC9-210ENST00000428307 HSP90AB1P08238 724 aaKnown RBP12.89□□□□□ -0.35
HDAC9-210ENST00000428307 CWF19L2Q2TBE0 894 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms