RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 HSP90AA1P07900 732 aaKnown RBP17.65■□□□□ 0.42
LIG1-202ENST00000427526 CLEC17AQ6ZS10 378 aa17.65■□□□□ 0.42
LIG1-202ENST00000427526 ARXQ96QS3 562 aa17.65■□□□□ 0.42
LIG1-202ENST00000427526 RRAGDQ9NQL2 400 aaPredicted RBP17.65■□□□□ 0.42
LIG1-202ENST00000427526 RABEP1Q15276 862 aa17.64■□□□□ 0.41
LIG1-202ENST00000427526 FOXD4L1Q9NU39 408 aa17.64■□□□□ 0.41
LIG1-202ENST00000427526 NWD1Q149M9 1564 aa17.64■□□□□ 0.41
LIG1-202ENST00000427526 SDSP20132 328 aa17.64■□□□□ 0.41
LIG1-202ENST00000427526 KRT28Q7Z3Y7 464 aa17.63■□□□□ 0.41
LIG1-202ENST00000427526 SMARCA5O60264 1052 aaPredicted RBP17.63■□□□□ 0.41
LIG1-202ENST00000427526 SKOR2Q2VWA4 1001 aaPredicted RBP17.63■□□□□ 0.41
LIG1-202ENST00000427526 NBPF6Q5VWK0 638 aa17.63■□□□□ 0.41
LIG1-202ENST00000427526 USP54Q70EL1 1684 aa17.63■□□□□ 0.41
LIG1-202ENST00000427526 KCNH5Q8NCM2 988 aa17.63■□□□□ 0.41
LIG1-202ENST00000427526 NBPF4Q96M43 638 aa17.63■□□□□ 0.41
LIG1-202ENST00000427526 GCP02774 474 aa17.62■□□□□ 0.41
LIG1-202ENST00000427526 PTMSP20962 102 aa17.62■□□□□ 0.41
LIG1-202ENST00000427526 GRPEL1Q9HAV7 217 aa17.62■□□□□ 0.41
LIG1-202ENST00000427526 G2E3Q7L622 706 aa17.61■□□□□ 0.41
LIG1-202ENST00000427526 TSPYL4Q9UJ04 414 aa17.61■□□□□ 0.41
LIG1-202ENST00000427526 NFAT5O94916 1531 aa17.61■□□□□ 0.41
LIG1-202ENST00000427526 C1orf167Q5SNV9 1468 aa17.61■□□□□ 0.41
LIG1-202ENST00000427526 TMEM94Q12767 1356 aa17.61■□□□□ 0.41
LIG1-202ENST00000427526 DDX17Q92841 729 aaKnown RBP17.61■□□□□ 0.41
LIG1-202ENST00000427526 SSFA2P28290 1259 aa17.61■□□□□ 0.41
LIG1-202ENST00000427526 GNAT3A8MTJ3 354 aa17.6■□□□□ 0.41
LIG1-202ENST00000427526 LRRC59Q96AG4 307 aaKnown RBP17.6■□□□□ 0.41
LIG1-202ENST00000427526 OSBPL3Q9H4L5 887 aa17.6■□□□□ 0.41
LIG1-202ENST00000427526 ATF3P18847 181 aa17.59■□□□□ 0.41
LIG1-202ENST00000427526 CCT4P50991 539 aaKnown RBP17.59■□□□□ 0.41
LIG1-202ENST00000427526 IL17REQ8NFR9 667 aa17.59■□□□□ 0.41
LIG1-202ENST00000427526 ARHGEF25Q86VW2 580 aa17.58■□□□□ 0.41
LIG1-202ENST00000427526 GAS2L3Q86XJ1 694 aa17.58■□□□□ 0.41
LIG1-202ENST00000427526 F6X3S4 739 aa17.58■□□□□ 0.4
LIG1-202ENST00000427526 APBB1O00213 710 aa17.58■□□□□ 0.4
LIG1-202ENST00000427526 HMMRO75330 724 aa17.58■□□□□ 0.4
LIG1-202ENST00000427526 CASC1Q6TDU7 716 aa17.58■□□□□ 0.4
LIG1-202ENST00000427526 LTN1O94822 1766 aa17.57■□□□□ 0.4
LIG1-202ENST00000427526 HTATSF1O43719 755 aaKnown RBP17.57■□□□□ 0.4
LIG1-202ENST00000427526 SLC4A10Q6U841 1118 aa17.56■□□□□ 0.4
LIG1-202ENST00000427526 BAG4O95429 457 aaKnown RBP17.56■□□□□ 0.4
LIG1-202ENST00000427526 CYP2E1P05181 493 aaPredicted RBP17.56■□□□□ 0.4
LIG1-202ENST00000427526 PDE1AP54750 535 aa17.56■□□□□ 0.4
LIG1-202ENST00000427526 AXIN2Q9Y2T1 843 aa17.56■□□□□ 0.4
LIG1-202ENST00000427526 MAP3K5Q99683 1374 aa17.55■□□□□ 0.4
LIG1-202ENST00000427526 ZMYND15Q9H091 742 aa17.55■□□□□ 0.4
LIG1-202ENST00000427526 REC8O95072 547 aa17.55■□□□□ 0.4
LIG1-202ENST00000427526 LRRC37A3O60309 1634 aa17.54■□□□□ 0.4
LIG1-202ENST00000427526 GNAI2P04899 355 aa17.54■□□□□ 0.4
LIG1-202ENST00000427526 SALL3Q9BXA9 1300 aa17.54■□□□□ 0.4
LIG1-202ENST00000427526 MST1RQ04912 1400 aa17.54■□□□□ 0.4
LIG1-202ENST00000427526 ERC2O15083 957 aa17.53■□□□□ 0.4
LIG1-202ENST00000427526 ZC3H6P61129 1189 aaKnown RBP17.53■□□□□ 0.4
LIG1-202ENST00000427526 NUCB2P80303 420 aa17.53■□□□□ 0.4
LIG1-202ENST00000427526 STRCP1A6NGW2 1772 aa17.53■□□□□ 0.4
LIG1-202ENST00000427526 GOLGA6L22H0YM25 854 aa17.53■□□□□ 0.4
LIG1-202ENST00000427526 KLHL40Q2TBA0 621 aa17.53■□□□□ 0.4
LIG1-202ENST00000427526 ANKRD24Q8TF21 1146 aa17.53■□□□□ 0.4
LIG1-202ENST00000427526 CWC22Q9HCG8 908 aaKnown RBP17.53■□□□□ 0.4
LIG1-202ENST00000427526 STK31Q9BXU1 1019 aa17.52■□□□□ 0.4
LIG1-202ENST00000427526 LGR6Q9HBX8 967 aa17.52■□□□□ 0.4
LIG1-202ENST00000427526 ST18O60284 1047 aa17.52■□□□□ 0.39
LIG1-202ENST00000427526 FLIIQ13045 1269 aa17.52■□□□□ 0.39
LIG1-202ENST00000427526 TAF7Q15545 349 aaPredicted RBP17.52■□□□□ 0.39
LIG1-202ENST00000427526 AK9Q5TCS8 1911 aa17.51■□□□□ 0.39
LIG1-202ENST00000427526 IBTKQ9P2D0 1353 aaPredicted RBP17.51■□□□□ 0.39
LIG1-202ENST00000427526 KDM4FA0A1W2PPD8 638 aa17.51■□□□□ 0.39
LIG1-202ENST00000427526 CLCN1P35523 988 aa17.51■□□□□ 0.39
LIG1-202ENST00000427526 NECTIN2Q92692 538 aa17.51■□□□□ 0.39
LIG1-202ENST00000427526 SLIT3O75094 1523 aa17.51■□□□□ 0.39
LIG1-202ENST00000427526 CCDC30Q5VVM6 783 aa17.51■□□□□ 0.39
LIG1-202ENST00000427526 EXOC6BQ9Y2D4 811 aa17.5■□□□□ 0.39
LIG1-202ENST00000427526 TUBGCP6Q96RT7 1819 aa17.5■□□□□ 0.39
LIG1-202ENST00000427526 FAM208AQ9UK61 1670 aaKnown RBP17.5■□□□□ 0.39
LIG1-202ENST00000427526 PKP1Q13835 747 aa17.5■□□□□ 0.39
LIG1-202ENST00000427526 CADPS2Q86UW7 1296 aa17.5■□□□□ 0.39
LIG1-202ENST00000427526 TRPM3Q9HCF6 1732 aaPredicted RBP17.5■□□□□ 0.39
LIG1-202ENST00000427526 GNAI3P08754 354 aa17.5■□□□□ 0.39
LIG1-202ENST00000427526 ATP8B2P98198 1209 aa17.5■□□□□ 0.39
LIG1-202ENST00000427526 GLIPR1L2Q4G1C9 344 aa17.49■□□□□ 0.39
LIG1-202ENST00000427526 CABLES1Q8TDN4 633 aa17.49■□□□□ 0.39
LIG1-202ENST00000427526 SOS1Q07889 1333 aaPredicted RBP17.49■□□□□ 0.39
LIG1-202ENST00000427526 PNMA6EA0A0J9YXQ4 647 aa17.49■□□□□ 0.39
LIG1-202ENST00000427526 LRRCC1Q9C099 1032 aa17.49■□□□□ 0.39
LIG1-202ENST00000427526 DDX49Q9Y6V7 483 aaKnown RBP17.49■□□□□ 0.39
LIG1-202ENST00000427526 FKBP5Q13451 457 aaPredicted RBP17.48■□□□□ 0.39
LIG1-202ENST00000427526 ZNF530Q6P9A1 599 aaPredicted RBP17.48■□□□□ 0.39
LIG1-202ENST00000427526 ZGPATQ8N5A5 531 aaKnown RBP17.48■□□□□ 0.39
LIG1-202ENST00000427526 BABAM1Q9NWV8 329 aa17.48■□□□□ 0.39
LIG1-202ENST00000427526 RGPD2P0DJD1 1756 aa17.48■□□□□ 0.39
LIG1-202ENST00000427526 LMBRD1Q9NUN5 540 aa17.47■□□□□ 0.39
LIG1-202ENST00000427526 MPRIPQ6WCQ1 1025 aa17.47■□□□□ 0.39
LIG1-202ENST00000427526 ZDHHC9Q9Y397 364 aa17.47■□□□□ 0.39
LIG1-202ENST00000427526 PLEKHO1Q53GL0 409 aaPredicted RBP17.47■□□□□ 0.39
LIG1-202ENST00000427526 MCTP1Q6DN14 999 aa17.47■□□□□ 0.39
LIG1-202ENST00000427526 KIF1AQ12756 1690 aa17.47■□□□□ 0.39
LIG1-202ENST00000427526 CACNA1FO60840 1977 aa17.47■□□□□ 0.39
LIG1-202ENST00000427526 MX1P20591 662 aa17.46■□□□□ 0.39
LIG1-202ENST00000427526 TSHZ3Q63HK5 1081 aa17.46■□□□□ 0.39
LIG1-202ENST00000427526 VSIG10Q8N0Z9 540 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 289.1 ms