RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 THUMPD2Q9BTF0 503 aaKnown RBP13.08□□□□□ -0.32
CD44-207ENST00000425428 RGS17Q9UGC6 210 aaPredicted RBP13.08□□□□□ -0.32
CD44-207ENST00000425428 CEMIPQ8WUJ3 1361 aa13.07□□□□□ -0.32
CD44-207ENST00000425428 HMGB2P26583 209 aaKnown RBP13.07□□□□□ -0.32
CD44-207ENST00000425428 ITGB4P16144 1822 aa13.07□□□□□ -0.32
CD44-207ENST00000425428 SMARCC1Q92922 1105 aaPredicted RBP13.06□□□□□ -0.32
CD44-207ENST00000425428 ZNF521Q96K83 1311 aa13.06□□□□□ -0.32
CD44-207ENST00000425428 DOT1LQ8TEK3 1739 aa13.06□□□□□ -0.32
CD44-207ENST00000425428 KDM6AO15550 1401 aaPredicted RBP13.05□□□□□ -0.32
CD44-207ENST00000425428 PRIM1P49642 420 aaKnown RBP13.05□□□□□ -0.32
CD44-207ENST00000425428 SLFN5Q08AF3 891 aa13.05□□□□□ -0.32
CD44-207ENST00000425428 ACSBG1Q96GR2 724 aa13.05□□□□□ -0.32
CD44-207ENST00000425428 ADAMTS7Q9UKP4 1686 aa13.05□□□□□ -0.32
CD44-207ENST00000425428 CHL1O00533 1208 aa13.04□□□□□ -0.32
CD44-207ENST00000425428 RGS12O14924 1447 aa13.04□□□□□ -0.32
CD44-207ENST00000425428 SF3B2Q13435 895 aaKnown RBP13.04□□□□□ -0.32
CD44-207ENST00000425428 BCL9O00512 1426 aa13.03□□□□□ -0.32
CD44-207ENST00000425428 SIPA1L3O60292 1781 aaPredicted RBP13.03□□□□□ -0.32
CD44-207ENST00000425428 FMNL2Q96PY5 1086 aa13.03□□□□□ -0.32
CD44-207ENST00000425428 MBIPQ9NS73 344 aa13.03□□□□□ -0.32
CD44-207ENST00000425428 MRC1P22897 1456 aa13.03□□□□□ -0.32
CD44-207ENST00000425428 CT47B1P0C2W7 299 aaPredicted RBP13.02□□□□□ -0.32
CD44-207ENST00000425428 ZNF790Q6PG37 636 aa13.02□□□□□ -0.32
CD44-207ENST00000425428 CDCA7LQ96GN5 454 aa13.02□□□□□ -0.32
CD44-207ENST00000425428 MIS18AQ9NYP9 233 aa13.02□□□□□ -0.32
CD44-207ENST00000425428 SOS1Q07889 1333 aaPredicted RBP13.02□□□□□ -0.32
CD44-207ENST00000425428 FANCIQ9NVI1 1328 aa13.02□□□□□ -0.32
CD44-207ENST00000425428 SBF2Q86WG5 1849 aa13.02□□□□□ -0.33
CD44-207ENST00000425428 ZNF853P0CG23 659 aa13.02□□□□□ -0.33
CD44-207ENST00000425428 PIGBQ92521 554 aa13.02□□□□□ -0.33
CD44-207ENST00000425428 TSR2Q969E8 191 aaKnown RBP13.02□□□□□ -0.33
CD44-207ENST00000425428 BCL11BQ9C0K0 894 aaPredicted RBP13.02□□□□□ -0.33
CD44-207ENST00000425428 FAM182BQ5T319 152 aa13.01□□□□□ -0.33
CD44-207ENST00000425428 TEX13AQ9BXU3 409 aaPredicted RBP13.01□□□□□ -0.33
CD44-207ENST00000425428 NHSQ6T4R5 1651 aa13.01□□□□□ -0.33
CD44-207ENST00000425428 TOGARAM1Q9Y4F4 1720 aa13□□□□□ -0.33
CD44-207ENST00000425428 ZNF428Q96B54 188 aa13□□□□□ -0.33
CD44-207ENST00000425428 RBM42Q9BTD8 480 aaKnown RBP13□□□□□ -0.33
CD44-207ENST00000425428 KDM3BQ7LBC6 1761 aa13□□□□□ -0.33
CD44-207ENST00000425428 DUSP27Q5VZP5 1158 aa12.99□□□□□ -0.33
CD44-207ENST00000425428 NPM2Q86SE8 214 aaKnown RBP12.99□□□□□ -0.33
CD44-207ENST00000425428 TRIM37O94972 964 aa12.99□□□□□ -0.33
CD44-207ENST00000425428 HOXB7P09629 217 aa12.99□□□□□ -0.33
CD44-207ENST00000425428 SNRPA1P09661 255 aaKnown RBP12.99□□□□□ -0.33
CD44-207ENST00000425428 EXOSC9Q06265 439 aaKnown RBP12.99□□□□□ -0.33
CD44-207ENST00000425428 SLC39A6Q13433 755 aa12.99□□□□□ -0.33
CD44-207ENST00000425428 TWISTNBQ3B726 338 aaPredicted RBP12.99□□□□□ -0.33
CD44-207ENST00000425428 STK31Q9BXU1 1019 aa12.99□□□□□ -0.33
CD44-207ENST00000425428 BTAF1O14981 1849 aa12.98□□□□□ -0.33
CD44-207ENST00000425428 PTCD1O75127 700 aaKnown RBP12.98□□□□□ -0.33
CD44-207ENST00000425428 TRMT2AQ8IZ69 625 aaKnown RBP12.98□□□□□ -0.33
CD44-207ENST00000425428 KCNQ2O43526 872 aa12.97□□□□□ -0.33
CD44-207ENST00000425428 EIF4A1P60842 406 aaKnown RBP12.97□□□□□ -0.33
CD44-207ENST00000425428 VSIG10Q8N0Z9 540 aa12.97□□□□□ -0.33
CD44-207ENST00000425428 SPINK5Q9NQ38 1064 aaPredicted RBP12.97□□□□□ -0.33
CD44-207ENST00000425428 ASAP1Q9ULH1 1129 aa12.97□□□□□ -0.33
CD44-207ENST00000425428 CACNA1FO60840 1977 aa12.97□□□□□ -0.33
CD44-207ENST00000425428 ELL2O00472 640 aaPredicted RBP12.97□□□□□ -0.33
CD44-207ENST00000425428 STARD3NLO95772 234 aa12.97□□□□□ -0.33
CD44-207ENST00000425428 CCDC30Q5VVM6 783 aa12.97□□□□□ -0.33
CD44-207ENST00000425428 CCDC125Q86Z20 511 aa12.97□□□□□ -0.33
CD44-207ENST00000425428 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.97□□□□□ -0.33
CD44-207ENST00000425428 ATG3Q9NT62 314 aa12.97□□□□□ -0.33
CD44-207ENST00000425428 PALLDQ8WX93 1383 aa12.96□□□□□ -0.33
CD44-207ENST00000425428 APBA3O96018 575 aa12.96□□□□□ -0.34
CD44-207ENST00000425428 PAPPAQ13219 1627 aa12.95□□□□□ -0.34
CD44-207ENST00000425428 CANXP27824 592 aaKnown RBP12.95□□□□□ -0.34
CD44-207ENST00000425428 ATP6V1AP38606 617 aa12.95□□□□□ -0.34
CD44-207ENST00000425428 HDGFL1Q5TGJ6 251 aa12.95□□□□□ -0.34
CD44-207ENST00000425428 PIAS4Q8N2W9 510 aaPredicted RBP12.95□□□□□ -0.34
CD44-207ENST00000425428 ZNF496Q96IT1 587 aaPredicted RBP12.95□□□□□ -0.34
CD44-207ENST00000425428 HEG1Q9ULI3 1381 aa12.95□□□□□ -0.34
CD44-207ENST00000425428 UBR2Q8IWV8 1755 aa12.95□□□□□ -0.34
CD44-207ENST00000425428 EIF2S2P20042 333 aaKnown RBP12.94□□□□□ -0.34
CD44-207ENST00000425428 RCAN3Q9UKA8 241 aa12.94□□□□□ -0.34
CD44-207ENST00000425428 LOC102724428A0A0B4J2F2 783 aa12.94□□□□□ -0.34
CD44-207ENST00000425428 KCNQ3O43525 872 aa12.94□□□□□ -0.34
CD44-207ENST00000425428 GIGYF1O75420 1035 aaPredicted RBP12.94□□□□□ -0.34
CD44-207ENST00000425428 BAG6P46379 1132 aa12.94□□□□□ -0.34
CD44-207ENST00000425428 SIK1P57059 783 aa12.94□□□□□ -0.34
CD44-207ENST00000425428 ALDH1L2Q3SY69 923 aa12.94□□□□□ -0.34
CD44-207ENST00000425428 C8orf58Q8NAV2 365 aa12.94□□□□□ -0.34
CD44-207ENST00000425428 SLC27A3Q5K4L6 730 aa12.93□□□□□ -0.34
CD44-207ENST00000425428 SMC4Q9NTJ3 1288 aa12.93□□□□□ -0.34
CD44-207ENST00000425428 CCNL1Q9UK58 526 aaPredicted RBP12.93□□□□□ -0.34
CD44-207ENST00000425428 IPO8O15397 1037 aaKnown RBP12.92□□□□□ -0.34
CD44-207ENST00000425428 VAMP4O75379 141 aa12.92□□□□□ -0.34
CD44-207ENST00000425428 PLSCR1O15162 318 aa12.92□□□□□ -0.34
CD44-207ENST00000425428 DBF4Q9UBU7 674 aaPredicted RBP12.92□□□□□ -0.34
CD44-207ENST00000425428 LAMB4A4D0S4 1761 aa12.91□□□□□ -0.34
CD44-207ENST00000425428 ERBB4Q15303 1308 aa12.91□□□□□ -0.34
CD44-207ENST00000425428 MS4A1P11836 297 aa12.91□□□□□ -0.34
CD44-207ENST00000425428 KIF16BQ96L93 1317 aa12.9□□□□□ -0.34
CD44-207ENST00000425428 TSPYL6Q8N831 410 aa12.9□□□□□ -0.34
CD44-207ENST00000425428 NECTIN2Q92692 538 aa12.9□□□□□ -0.34
CD44-207ENST00000425428 HYPKQ9NX55 129 aa12.9□□□□□ -0.34
CD44-207ENST00000425428 KCPQ6ZWJ8 1503 aa12.9□□□□□ -0.34
CD44-207ENST00000425428 ZNF831Q5JPB2 1677 aa12.9□□□□□ -0.34
CD44-207ENST00000425428 DDX58O95786 925 aaKnown RBP12.89□□□□□ -0.35
CD44-207ENST00000425428 KRT24Q2M2I5 525 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms