RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 KCNF1Q9H3M0 494 aa12.93□□□□□ -0.34
USP54-204ENST00000422491 STK26Q9P289 416 aa12.93□□□□□ -0.34
USP54-204ENST00000422491 SIGLEC1Q9BZZ2 1709 aa12.93□□□□□ -0.34
USP54-204ENST00000422491 MINK1Q8N4C8 1332 aaPredicted RBP12.93□□□□□ -0.34
USP54-204ENST00000422491 MAP2P11137 1827 aaKnown RBP12.93□□□□□ -0.34
USP54-204ENST00000422491 SPDYE4A6NLX3 237 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 RIOK3O14730 519 aaKnown RBP12.92□□□□□ -0.34
USP54-204ENST00000422491 FUCA2Q9BTY2 467 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 SRCIN1Q9C0H9 1055 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 DIAPH3Q9NSV4 1193 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 SALL3Q9BXA9 1300 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 FAM83GA6ND36 823 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 MCCP23508 829 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 PYCARDQ9ULZ3 195 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 AP5Z1O43299 807 aa12.92□□□□□ -0.34
USP54-204ENST00000422491 KIAA0232Q92628 1395 aa12.91□□□□□ -0.34
USP54-204ENST00000422491 SSH2Q76I76 1423 aa12.91□□□□□ -0.34
USP54-204ENST00000422491 U2AF2P26368 475 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP54-204ENST00000422491 FGD1P98174 961 aa12.91□□□□□ -0.34
USP54-204ENST00000422491 CNPY2Q9Y2B0 182 aa12.91□□□□□ -0.34
USP54-204ENST00000422491 KLHL34Q8N239 644 aa12.9□□□□□ -0.34
USP54-204ENST00000422491 PRAM1Q96QH2 718 aa12.9□□□□□ -0.34
USP54-204ENST00000422491 CABP1Q9NZU7 370 aa12.9□□□□□ -0.34
USP54-204ENST00000422491 UBE2HP62256 183 aa12.9□□□□□ -0.34
USP54-204ENST00000422491 DCTN1Q14203 1278 aa12.9□□□□□ -0.34
USP54-204ENST00000422491 UPF3BQ9BZI7 483 aaKnown RBP12.9□□□□□ -0.34
USP54-204ENST00000422491 EMILIN1Q9Y6C2 1016 aa12.9□□□□□ -0.34
USP54-204ENST00000422491 CDK12Q9NYV4 1490 aaPredicted RBP12.9□□□□□ -0.35
USP54-204ENST00000422491 HMMRO75330 724 aa12.89□□□□□ -0.35
USP54-204ENST00000422491 CHMLP26374 656 aa12.89□□□□□ -0.35
USP54-204ENST00000422491 CHAF1AQ13111 956 aaPredicted RBP12.89□□□□□ -0.35
USP54-204ENST00000422491 TSHZ3Q63HK5 1081 aa12.89□□□□□ -0.35
USP54-204ENST00000422491 ANO2Q9NQ90 1003 aa12.89□□□□□ -0.35
USP54-204ENST00000422491 PTPRCP08575 1304 aa12.89□□□□□ -0.35
USP54-204ENST00000422491 TPM3P06753 285 aa12.89□□□□□ -0.35
USP54-204ENST00000422491 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP54-204ENST00000422491 FEZ1Q99689 392 aa12.89□□□□□ -0.35
USP54-204ENST00000422491 GGT6Q6P531 493 aa12.88□□□□□ -0.35
USP54-204ENST00000422491 CDK19Q9BWU1 502 aa12.88□□□□□ -0.35
USP54-204ENST00000422491 ZSCAN22P10073 491 aaPredicted RBP12.87□□□□□ -0.35
USP54-204ENST00000422491 HAP1P54257 671 aaPredicted RBP12.87□□□□□ -0.35
USP54-204ENST00000422491 NCBP1Q09161 790 aaKnown RBP12.86□□□□□ -0.35
USP54-204ENST00000422491 GIMAP6Q6P9H5 292 aa12.86□□□□□ -0.35
USP54-204ENST00000422491 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.86□□□□□ -0.35
USP54-204ENST00000422491 OGFRQ9NZT2 677 aa12.86□□□□□ -0.35
USP54-204ENST00000422491 ATP7BP35670 1465 aa12.86□□□□□ -0.35
USP54-204ENST00000422491 PLCB2Q00722 1185 aa12.86□□□□□ -0.35
USP54-204ENST00000422491 SYCP1Q15431 976 aa12.86□□□□□ -0.35
USP54-204ENST00000422491 EXOC6BQ9Y2D4 811 aa12.86□□□□□ -0.35
USP54-204ENST00000422491 POGZQ7Z3K3 1410 aa12.85□□□□□ -0.35
USP54-204ENST00000422491 CHL1O00533 1208 aa12.85□□□□□ -0.35
USP54-204ENST00000422491 EPB41L2O43491 1005 aaKnown RBP12.85□□□□□ -0.35
USP54-204ENST00000422491 IGSF3O75054 1194 aa12.85□□□□□ -0.35
USP54-204ENST00000422491 HSPA4P34932 840 aa12.85□□□□□ -0.35
USP54-204ENST00000422491 IL25Q9H293 177 aa12.85□□□□□ -0.35
USP54-204ENST00000422491 SPC24Q8NBT2 197 aa12.85□□□□□ -0.35
USP54-204ENST00000422491 STX6O43752 255 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 F13A1P00488 732 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 SYT1P21579 422 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 TAF3Q5VWG9 929 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 CTNNA3Q9UI47 895 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 AATKQ6ZMQ8 1374 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 GOLGA6L6A8MZA4 724 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 FIBPO43427 364 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 UNC5CLQ8IV45 518 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 RILPL2Q969X0 211 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 LRRCC1Q9C099 1032 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 STAP2Q9UGK3 403 aa12.84□□□□□ -0.35
USP54-204ENST00000422491 TRIM6-TRIM34B2RNG4 842 aa12.83□□□□□ -0.36
USP54-204ENST00000422491 IDI1Q13907 227 aa12.83□□□□□ -0.36
USP54-204ENST00000422491 TPRNQ4KMQ1 711 aa12.83□□□□□ -0.36
USP54-204ENST00000422491 TTC14Q96N46 770 aa12.83□□□□□ -0.36
USP54-204ENST00000422491 SENP3Q9H4L4 574 aaPredicted RBP12.83□□□□□ -0.36
USP54-204ENST00000422491 GTF2E1P29083 439 aaPredicted RBP12.82□□□□□ -0.36
USP54-204ENST00000422491 GABPB1Q06547 395 aaPredicted RBP12.82□□□□□ -0.36
USP54-204ENST00000422491 MYO5BQ9ULV0 1848 aa12.82□□□□□ -0.36
USP54-204ENST00000422491 MLH3Q9UHC1 1453 aa12.82□□□□□ -0.36
USP54-204ENST00000422491 SLC4A2P04920 1241 aa12.82□□□□□ -0.36
USP54-204ENST00000422491 PTGS1P23219 599 aa12.82□□□□□ -0.36
USP54-204ENST00000422491 ATP6V1DQ9Y5K8 247 aa12.82□□□□□ -0.36
USP54-204ENST00000422491 PREX1Q8TCU6 1659 aa12.82□□□□□ -0.36
USP54-204ENST00000422491 DDX41Q9UJV9 622 aaKnown RBP12.81□□□□□ -0.36
USP54-204ENST00000422491 SMTNL1A8MU46 457 aa12.81□□□□□ -0.36
USP54-204ENST00000422491 GNAI2P04899 355 aa12.81□□□□□ -0.36
USP54-204ENST00000422491 CCDC192P0DO97 292 aa12.81□□□□□ -0.36
USP54-204ENST00000422491 CCT4P50991 539 aaKnown RBP12.81□□□□□ -0.36
USP54-204ENST00000422491 EDC4Q6P2E9 1401 aaKnown RBP12.81□□□□□ -0.36
USP54-204ENST00000422491 F6X3S4 739 aa12.81□□□□□ -0.36
USP54-204ENST00000422491 AK2P54819 239 aa12.81□□□□□ -0.36
USP54-204ENST00000422491 RUFY3Q7L099 469 aa12.81□□□□□ -0.36
USP54-204ENST00000422491 ZNF771Q7L3S4 317 aaPredicted RBP12.81□□□□□ -0.36
USP54-204ENST00000422491 BBXQ8WY36 941 aaPredicted RBP12.81□□□□□ -0.36
USP54-204ENST00000422491 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.81□□□□□ -0.36
USP54-204ENST00000422491 DNM1Q05193 864 aaKnown RBP12.8□□□□□ -0.36
USP54-204ENST00000422491 G2E3Q7L622 706 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 NME9Q86XW9 330 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 FAM200AQ8TCP9 573 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 TMEM51Q9NW97 253 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 ZRANB1Q9UGI0 708 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 SNX14Q9Y5W7 946 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms