RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CDCA7LQ96GN5 454 aa7.74□□□□□ -1.17
HMGB3-202ENST00000419110 SCUBE2Q9NQ36 999 aa7.74□□□□□ -1.17
HMGB3-202ENST00000419110 WDR17Q8IZU2 1322 aa7.74□□□□□ -1.17
HMGB3-202ENST00000419110 ITGB4P16144 1822 aa7.73□□□□□ -1.17
HMGB3-202ENST00000419110 CRB1P82279 1406 aa7.73□□□□□ -1.17
HMGB3-202ENST00000419110 PYGBP11216 843 aa7.73□□□□□ -1.17
HMGB3-202ENST00000419110 RRP1P56182 461 aaKnown RBP7.73□□□□□ -1.17
HMGB3-202ENST00000419110 GNAI1P63096 354 aa7.73□□□□□ -1.17
HMGB3-202ENST00000419110 USHBP1Q8N6Y0 703 aa7.73□□□□□ -1.17
HMGB3-202ENST00000419110 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.73□□□□□ -1.17
HMGB3-202ENST00000419110 CABLES1Q8TDN4 633 aa7.73□□□□□ -1.17
HMGB3-202ENST00000419110 RTF1Q92541 710 aaKnown RBP7.73□□□□□ -1.17
HMGB3-202ENST00000419110 IFT57Q9NWB7 429 aa7.73□□□□□ -1.17
HMGB3-202ENST00000419110 SUPT16HQ9Y5B9 1047 aaKnown RBP7.73□□□□□ -1.17
HMGB3-202ENST00000419110 JCADQ9P266 1359 aa7.72□□□□□ -1.17
HMGB3-202ENST00000419110 CT47B1P0C2W7 299 aaPredicted RBP7.72□□□□□ -1.17
HMGB3-202ENST00000419110 PIP4K2BP78356 416 aa7.72□□□□□ -1.17
HMGB3-202ENST00000419110 CHRNA2Q15822 529 aa7.72□□□□□ -1.17
HMGB3-202ENST00000419110 IER5LQ5T953 404 aa7.72□□□□□ -1.17
HMGB3-202ENST00000419110 RAPGEF4Q8WZA2 1011 aa7.72□□□□□ -1.17
HMGB3-202ENST00000419110 PHACTR3Q96KR7 559 aa7.72□□□□□ -1.17
HMGB3-202ENST00000419110 TMEM106CQ9BVX2 250 aa7.72□□□□□ -1.17
HMGB3-202ENST00000419110 NLRP2Q9NX02 1062 aa7.72□□□□□ -1.17
HMGB3-202ENST00000419110 COLQQ9Y215 455 aaPredicted RBP7.72□□□□□ -1.17
HMGB3-202ENST00000419110 TNS2Q63HR2 1409 aa7.71□□□□□ -1.17
HMGB3-202ENST00000419110 CANXP27824 592 aaKnown RBP7.71□□□□□ -1.18
HMGB3-202ENST00000419110 AMOTQ4VCS5 1084 aa7.71□□□□□ -1.18
HMGB3-202ENST00000419110 C1orf141Q5JVX7 400 aa7.71□□□□□ -1.18
HMGB3-202ENST00000419110 ZNF530Q6P9A1 599 aaPredicted RBP7.71□□□□□ -1.18
HMGB3-202ENST00000419110 TRMT2AQ8IZ69 625 aaKnown RBP7.71□□□□□ -1.18
HMGB3-202ENST00000419110 RNF123Q5XPI4 1314 aa7.71□□□□□ -1.18
HMGB3-202ENST00000419110 GNAT3A8MTJ3 354 aa7.7□□□□□ -1.18
HMGB3-202ENST00000419110 HTATSF1O43719 755 aaKnown RBP7.7□□□□□ -1.18
HMGB3-202ENST00000419110 TATP17735 454 aaPredicted RBP7.7□□□□□ -1.18
HMGB3-202ENST00000419110 MTHFSDQ2M296 383 aaKnown RBP7.7□□□□□ -1.18
HMGB3-202ENST00000419110 PLEKHO1Q53GL0 409 aaPredicted RBP7.7□□□□□ -1.18
HMGB3-202ENST00000419110 NBPF6Q5VWK0 638 aa7.7□□□□□ -1.18
HMGB3-202ENST00000419110 ERICH6BQ5W0A0 696 aa7.7□□□□□ -1.18
HMGB3-202ENST00000419110 NBPF4Q96M43 638 aa7.7□□□□□ -1.18
HMGB3-202ENST00000419110 GLI3P10071 1580 aa7.7□□□□□ -1.18
HMGB3-202ENST00000419110 KIF16BQ96L93 1317 aa7.7□□□□□ -1.18
HMGB3-202ENST00000419110 SLIT2O94813 1529 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 GSE1Q14687 1217 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 TOM1L2Q6ZVM7 507 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 CERKQ8TCT0 537 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 TSR2Q969E8 191 aaKnown RBP7.69□□□□□ -1.18
HMGB3-202ENST00000419110 AXIN2Q9Y2T1 843 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 LAS1LQ9Y4W2 734 aaKnown RBP7.69□□□□□ -1.18
HMGB3-202ENST00000419110 PCDH11XQ9BZA7 1347 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 PCDH11YQ9BZA8 1340 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 THSD7AQ9UPZ6 1657 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 CEMIPQ8WUJ3 1361 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 DISP2A7MBM2 1401 aa7.69□□□□□ -1.18
HMGB3-202ENST00000419110 KDM6AO15550 1401 aaPredicted RBP7.69□□□□□ -1.18
HMGB3-202ENST00000419110 AFDNP55196 1824 aaKnown RBP7.68□□□□□ -1.18
HMGB3-202ENST00000419110 CICQ96RK0 1608 aaPredicted RBP7.68□□□□□ -1.18
HMGB3-202ENST00000419110 KAT6BQ8WYB5 2073 aa7.68□□□□□ -1.18
HMGB3-202ENST00000419110 AKAP4Q5JQC9 854 aa7.68□□□□□ -1.18
HMGB3-202ENST00000419110 ZNF428Q96B54 188 aa7.68□□□□□ -1.18
HMGB3-202ENST00000419110 CFAP44Q96MT7 982 aa7.68□□□□□ -1.18
HMGB3-202ENST00000419110 THUMPD2Q9BTF0 503 aaKnown RBP7.68□□□□□ -1.18
HMGB3-202ENST00000419110 SPG7Q9UQ90 795 aa7.68□□□□□ -1.18
HMGB3-202ENST00000419110 FAM83GA6ND36 823 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 POTEMA6NI47 508 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 HSP90AB1P08238 724 aaKnown RBP7.67□□□□□ -1.18
HMGB3-202ENST00000419110 IRX6P78412 446 aaPredicted RBP7.67□□□□□ -1.18
HMGB3-202ENST00000419110 EXOSC9Q06265 439 aaKnown RBP7.67□□□□□ -1.18
HMGB3-202ENST00000419110 MCM10Q7L590 875 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 CARD10Q9BWT7 1032 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 STRN4Q9NRL3 753 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 MBIPQ9NS73 344 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 SMC4Q9NTJ3 1288 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.67□□□□□ -1.18
HMGB3-202ENST00000419110 TSPYL4Q9UJ04 414 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 PCDHB8Q9UN66 801 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 SPATA31A6Q5VVP1 1343 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 NHSQ6T4R5 1651 aa7.67□□□□□ -1.18
HMGB3-202ENST00000419110 ARFGEF2Q9Y6D5 1785 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 ZNF853P0CG23 659 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 IL2RBP14784 551 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 EVA1CP58658 441 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 TEFQ10587 303 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 DCTN1Q14203 1278 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 BABAM1Q9NWV8 329 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 BTG4Q9NY30 223 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 SOS1Q07889 1333 aaPredicted RBP7.66□□□□□ -1.18
HMGB3-202ENST00000419110 PXDNLA1KZ92 1463 aa7.66□□□□□ -1.18
HMGB3-202ENST00000419110 MS4A1P11836 297 aa7.65□□□□□ -1.18
HMGB3-202ENST00000419110 RARSP54136 660 aaKnown RBP7.65□□□□□ -1.18
HMGB3-202ENST00000419110 TJP1Q07157 1748 aa7.65□□□□□ -1.18
HMGB3-202ENST00000419110 ALDH1L2Q3SY69 923 aa7.65□□□□□ -1.18
HMGB3-202ENST00000419110 ANKRD36CQ5JPF3 1778 aa7.65□□□□□ -1.18
HMGB3-202ENST00000419110 NUP188Q5SRE5 1749 aa7.65□□□□□ -1.18
HMGB3-202ENST00000419110 SBF2Q86WG5 1849 aa7.64□□□□□ -1.19
HMGB3-202ENST00000419110 NUTM2BA6NNL0 878 aaPredicted RBP7.64□□□□□ -1.19
HMGB3-202ENST00000419110 NUTM2EB1AL46 878 aaPredicted RBP7.64□□□□□ -1.19
HMGB3-202ENST00000419110 ADAMTS2O95450 1211 aa7.64□□□□□ -1.19
HMGB3-202ENST00000419110 PLCG2P16885 1265 aa7.64□□□□□ -1.19
HMGB3-202ENST00000419110 TWISTNBQ3B726 338 aaPredicted RBP7.64□□□□□ -1.19
HMGB3-202ENST00000419110 LARP1Q6PKG0 1096 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms