RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 PPP2R1AP30153 589 aa22.16■■□□□ 1.14
LINC00404-201ENST00000418660 AK7Q96M32 723 aa22.16■■□□□ 1.14
LINC00404-201ENST00000418660 POLD1P28340 1107 aa22.15■■□□□ 1.14
LINC00404-201ENST00000418660 ITPK1Q13572 414 aa22.15■■□□□ 1.14
LINC00404-201ENST00000418660 MTHFSDQ2M296 383 aaKnown RBP22.15■■□□□ 1.14
LINC00404-201ENST00000418660 NFATC2IPQ8NCF5 419 aa22.15■■□□□ 1.14
LINC00404-201ENST00000418660 LINC00116Q8NCU8 138 aa22.15■■□□□ 1.14
LINC00404-201ENST00000418660 SYT17Q9BSW7 474 aa22.14■■□□□ 1.13
LINC00404-201ENST00000418660 FHDC1Q9C0D6 1143 aaPredicted RBP22.14■■□□□ 1.13
LINC00404-201ENST00000418660 COL24A1Q17RW2 1714 aa22.14■■□□□ 1.13
LINC00404-201ENST00000418660 RBM42Q9BTD8 480 aaKnown RBP22.13■■□□□ 1.13
LINC00404-201ENST00000418660 DCAF8L1A6NGE4 600 aa22.11■■□□□ 1.13
LINC00404-201ENST00000418660 RNMTO43148 476 aaKnown RBP22.11■■□□□ 1.13
LINC00404-201ENST00000418660 SLC4A9Q96Q91 983 aa22.11■■□□□ 1.13
LINC00404-201ENST00000418660 LGR6Q9HBX8 967 aa22.11■■□□□ 1.13
LINC00404-201ENST00000418660 NUDCQ9Y266 331 aa22.11■■□□□ 1.13
LINC00404-201ENST00000418660 SCN11AQ9UI33 1791 aa22.11■■□□□ 1.13
LINC00404-201ENST00000418660 ZNF831Q5JPB2 1677 aa22.11■■□□□ 1.13
LINC00404-201ENST00000418660 SSFA2P28290 1259 aa22.1■■□□□ 1.13
LINC00404-201ENST00000418660 AMIGO3Q86WK7 504 aa22.1■■□□□ 1.13
LINC00404-201ENST00000418660 SLC52A2Q9HAB3 445 aa22.1■■□□□ 1.13
LINC00404-201ENST00000418660 MAP3K5Q99683 1374 aa22.1■■□□□ 1.13
LINC00404-201ENST00000418660 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.09■■□□□ 1.13
LINC00404-201ENST00000418660 GNPATO15228 680 aa22.08■■□□□ 1.13
LINC00404-201ENST00000418660 PHF14O94880 888 aa22.08■■□□□ 1.13
LINC00404-201ENST00000418660 UBR3Q6ZT12 1888 aa22.08■■□□□ 1.13
LINC00404-201ENST00000418660 PTCD1O75127 700 aaKnown RBP22.07■■□□□ 1.12
LINC00404-201ENST00000418660 RC3H1Q5TC82 1133 aaKnown RBP22.07■■□□□ 1.12
LINC00404-201ENST00000418660 SMIM5Q71RC9 77 aa22.07■■□□□ 1.12
LINC00404-201ENST00000418660 GAS2L2Q8NHY3 880 aa22.07■■□□□ 1.12
LINC00404-201ENST00000418660 MRC1P22897 1456 aa22.07■■□□□ 1.12
LINC00404-201ENST00000418660 MSL1Q68DK7 614 aa22.06■■□□□ 1.12
LINC00404-201ENST00000418660 RSPH6AQ9H0K4 717 aa22.06■■□□□ 1.12
LINC00404-201ENST00000418660 ADAMTS7Q9UKP4 1686 aa22.06■■□□□ 1.12
LINC00404-201ENST00000418660 U2AF1L5P0DN76 240 aaPredicted RBP22.05■■□□□ 1.12
LINC00404-201ENST00000418660 PRKAR2BP31323 418 aa22.05■■□□□ 1.12
LINC00404-201ENST00000418660 U2AF1Q01081 240 aaKnown RBP eCLIP22.05■■□□□ 1.12
LINC00404-201ENST00000418660 RTCBQ9Y3I0 505 aaKnown RBP22.04■■□□□ 1.12
LINC00404-201ENST00000418660 CNTNAP4Q9C0A0 1308 aa22.04■■□□□ 1.12
LINC00404-201ENST00000418660 GNAT3A8MTJ3 354 aa22.03■■□□□ 1.12
LINC00404-201ENST00000418660 KLHL34Q8N239 644 aa22.03■■□□□ 1.12
LINC00404-201ENST00000418660 PHACTR3Q96KR7 559 aa22.03■■□□□ 1.12
LINC00404-201ENST00000418660 FCHSD2O94868 740 aa22.02■■□□□ 1.12
LINC00404-201ENST00000418660 COL5A3P25940 1745 aaPredicted RBP22.02■■□□□ 1.12
LINC00404-201ENST00000418660 RPS6KA4O75676 772 aa22.01■■□□□ 1.11
LINC00404-201ENST00000418660 TRAPPC3LQ5T215 181 aa22.01■■□□□ 1.11
LINC00404-201ENST00000418660 IL17REQ8NFR9 667 aa22.01■■□□□ 1.11
LINC00404-201ENST00000418660 ADRA2BP18089 450 aa22■■□□□ 1.11
LINC00404-201ENST00000418660 DDX10Q13206 875 aaKnown RBP22■■□□□ 1.11
LINC00404-201ENST00000418660 SLC39A6Q13433 755 aa22■■□□□ 1.11
LINC00404-201ENST00000418660 VIRMAQ69YN4 1812 aaKnown RBP21.99■■□□□ 1.11
LINC00404-201ENST00000418660 CICQ96RK0 1608 aaPredicted RBP21.99■■□□□ 1.11
LINC00404-201ENST00000418660 CRKLP46109 303 aaKnown RBP21.98■■□□□ 1.11
LINC00404-201ENST00000418660 TEFQ10587 303 aa21.98■■□□□ 1.11
LINC00404-201ENST00000418660 ARHGEF1Q92888 912 aaKnown RBP21.98■■□□□ 1.11
LINC00404-201ENST00000418660 TJP1Q07157 1748 aa21.97■■□□□ 1.11
LINC00404-201ENST00000418660 RALBP1Q15311 655 aa21.97■■□□□ 1.11
LINC00404-201ENST00000418660 KCPQ6ZWJ8 1503 aa21.96■■□□□ 1.11
LINC00404-201ENST00000418660 DNAJC10Q8IXB1 793 aa21.96■■□□□ 1.11
LINC00404-201ENST00000418660 NLGN2Q8NFZ4 835 aa21.96■■□□□ 1.11
LINC00404-201ENST00000418660 CD2APQ9Y5K6 639 aa21.96■■□□□ 1.11
LINC00404-201ENST00000418660 RFC4P35249 363 aa21.95■■□□□ 1.1
LINC00404-201ENST00000418660 TTC5Q8N0Z6 440 aa21.95■■□□□ 1.1
LINC00404-201ENST00000418660 VSIG10Q8N0Z9 540 aa21.95■■□□□ 1.1
LINC00404-201ENST00000418660 CEMIPQ8WUJ3 1361 aa21.95■■□□□ 1.1
LINC00404-201ENST00000418660 INTS5Q6P9B9 1019 aaKnown RBP21.94■■□□□ 1.1
LINC00404-201ENST00000418660 NLGN1Q8N2Q7 840 aa21.94■■□□□ 1.1
LINC00404-201ENST00000418660 MYH14Q7Z406 1995 aaKnown RBP21.94■■□□□ 1.1
LINC00404-201ENST00000418660 CYP19A1P11511 503 aaPredicted RBP21.93■■□□□ 1.1
LINC00404-201ENST00000418660 CCDC87Q9NVE4 849 aa21.93■■□□□ 1.1
LINC00404-201ENST00000418660 YY1P25490 414 aa21.92■■□□□ 1.1
LINC00404-201ENST00000418660 ZEB1P37275 1124 aaPredicted RBP21.92■■□□□ 1.1
LINC00404-201ENST00000418660 GPR162Q16538 588 aa21.92■■□□□ 1.1
LINC00404-201ENST00000418660 ZNF790Q6PG37 636 aa21.92■■□□□ 1.1
LINC00404-201ENST00000418660 RTF1Q92541 710 aaKnown RBP21.92■■□□□ 1.1
LINC00404-201ENST00000418660 HTATSF1O43719 755 aaKnown RBP21.91■■□□□ 1.1
LINC00404-201ENST00000418660 GYS1P13807 737 aa21.91■■□□□ 1.1
LINC00404-201ENST00000418660 SIPA1L3O60292 1781 aaPredicted RBP21.91■■□□□ 1.1
LINC00404-201ENST00000418660 UBR2Q8IWV8 1755 aa21.91■■□□□ 1.1
LINC00404-201ENST00000418660 NEFMP07197 916 aa21.9■■□□□ 1.1
LINC00404-201ENST00000418660 MMP10P09238 476 aa21.9■■□□□ 1.1
LINC00404-201ENST00000418660 ZNF496Q96IT1 587 aaPredicted RBP21.89■■□□□ 1.09
LINC00404-201ENST00000418660 PNNQ9H307 717 aaKnown RBP21.89■■□□□ 1.09
LINC00404-201ENST00000418660 SOS1Q07889 1333 aaPredicted RBP21.88■■□□□ 1.09
LINC00404-201ENST00000418660 BTBD11A6QL63 1104 aa21.88■■□□□ 1.09
LINC00404-201ENST00000418660 MCM10Q7L590 875 aa21.88■■□□□ 1.09
LINC00404-201ENST00000418660 PLEKHF1Q96S99 279 aa21.88■■□□□ 1.09
LINC00404-201ENST00000418660 C4AP0C0L4 1744 aa21.88■■□□□ 1.09
LINC00404-201ENST00000418660 HEG1Q9ULI3 1381 aa21.87■■□□□ 1.09
LINC00404-201ENST00000418660 MYBBP1AQ9BQG0 1328 aaKnown RBP21.87■■□□□ 1.09
LINC00404-201ENST00000418660 USP42Q9H9J4 1324 aaKnown RBP21.87■■□□□ 1.09
LINC00404-201ENST00000418660 STARD3NLO95772 234 aa21.87■■□□□ 1.09
LINC00404-201ENST00000418660 PELP1Q8IZL8 1130 aaKnown RBP21.87■■□□□ 1.09
LINC00404-201ENST00000418660 FMNL2Q96PY5 1086 aa21.87■■□□□ 1.09
LINC00404-201ENST00000418660 TEX13AQ9BXU3 409 aaPredicted RBP21.87■■□□□ 1.09
LINC00404-201ENST00000418660 SRP68Q9UHB9 627 aaKnown RBP21.86■■□□□ 1.09
LINC00404-201ENST00000418660 ZBTB1Q9Y2K1 713 aa21.86■■□□□ 1.09
LINC00404-201ENST00000418660 DCTN1Q14203 1278 aa21.85■■□□□ 1.09
LINC00404-201ENST00000418660 KCNQ3O43525 872 aa21.84■■□□□ 1.09
LINC00404-201ENST00000418660 PARP3Q9Y6F1 533 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms