RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CDCA7Q9BWT1 371 aaPredicted RBP3.75□□□□□ -1.81
MCF2-204ENST00000414978 KIAA1024Q9UPX6 916 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 KIDINS220Q9ULH0 1771 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 HDGFP51858 240 aaKnown RBP3.74□□□□□ -1.81
MCF2-204ENST00000414978 EGFLAMQ63HQ2 1017 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 BLOC1S3Q6QNY0 202 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 RNF19AQ9NV58 838 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 SLC27A5Q9Y2P5 690 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 MLH3Q9UHC1 1453 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 DNMT1P26358 1616 aaKnown RBP3.74□□□□□ -1.81
MCF2-204ENST00000414978 PREX2Q70Z35 1606 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 IQGAP1P46940 1657 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 SFI1A8K8P3 1242 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 TRIM6-TRIM34B2RNG4 842 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 CARMIL1Q5VZK9 1371 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 ARID4AP29374 1257 aaPredicted RBP3.74□□□□□ -1.81
MCF2-204ENST00000414978 MAPK8P45983 427 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 TINF2Q9BSI4 451 aa3.74□□□□□ -1.81
MCF2-204ENST00000414978 HMGB1P09429 215 aaKnown RBP3.73□□□□□ -1.81
MCF2-204ENST00000414978 SSFA2P28290 1259 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 CLDN10P78369 228 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 PPP4R3BQ5MIZ7 849 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 CCDC24Q8N4L8 307 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 PCDH10Q9P2E7 1040 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 IQSEC3Q9UPP2 1182 aaPredicted RBP3.73□□□□□ -1.81
MCF2-204ENST00000414978 CDC42BPBQ9Y5S2 1711 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 SOWAHDA6NJG2 315 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 SLC34A2O95436 690 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 PRPF38BQ5VTL8 546 aaKnown RBP3.73□□□□□ -1.81
MCF2-204ENST00000414978 RPUSD2Q8IZ73 545 aaKnown RBP3.73□□□□□ -1.81
MCF2-204ENST00000414978 EVI5LQ96CN4 794 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 PURBQ96QR8 312 aaKnown RBP3.73□□□□□ -1.81
MCF2-204ENST00000414978 TBX22Q9Y458 520 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 CLTCQ00610 1675 aaKnown RBP3.73□□□□□ -1.81
MCF2-204ENST00000414978 ZBBXA8MT70 800 aa3.73□□□□□ -1.81
MCF2-204ENST00000414978 INO80Q9ULG1 1556 aaPredicted RBP3.73□□□□□ -1.81
MCF2-204ENST00000414978 B4GALNT3Q6L9W6 998 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 TSEN2Q8NCE0 465 aaKnown RBP3.72□□□□□ -1.81
MCF2-204ENST00000414978 BACH2Q9BYV9 841 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 RBM19Q9Y4C8 960 aaKnown RBP3.72□□□□□ -1.81
MCF2-204ENST00000414978 ZNF518AQ6AHZ1 1483 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 GABBR2O75899 941 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 A2ML1A8K2U0 1454 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 ABCC1P33527 1531 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 LRRC9Q6ZRR7 1453 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 ERCC5P28715 1186 aaPredicted RBP3.72□□□□□ -1.81
MCF2-204ENST00000414978 PTK7Q13308 1070 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 ANKMY2Q8IV38 441 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 PLPP7Q8NBV4 271 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 NWD1Q149M9 1564 aa3.72□□□□□ -1.81
MCF2-204ENST00000414978 NHSL1Q5SYE7 1610 aa3.71□□□□□ -1.81
MCF2-204ENST00000414978 NR1H3Q13133 447 aa3.71□□□□□ -1.81
MCF2-204ENST00000414978 NAALADL2Q58DX5 795 aa3.71□□□□□ -1.81
MCF2-204ENST00000414978 ZNF326Q5BKZ1 582 aaKnown RBP3.71□□□□□ -1.81
MCF2-204ENST00000414978 TBCELQ5QJ74 424 aa3.71□□□□□ -1.81
MCF2-204ENST00000414978 GTF3C2Q8WUA4 911 aaPredicted RBP3.71□□□□□ -1.81
MCF2-204ENST00000414978 CAMSAP2Q08AD1 1489 aa3.71□□□□□ -1.82
MCF2-204ENST00000414978 GTF2F1P35269 517 aaKnown RBP eCLIP3.71□□□□□ -1.82
MCF2-204ENST00000414978 PRDM9Q9NQV7 894 aa3.71□□□□□ -1.82
MCF2-204ENST00000414978 NUP153P49790 1475 aaKnown RBP3.71□□□□□ -1.82
MCF2-204ENST00000414978 SHANK2Q9UPX8 1470 aa3.71□□□□□ -1.82
MCF2-204ENST00000414978 DNAJA1P31689 397 aaKnown RBP3.71□□□□□ -1.82
MCF2-204ENST00000414978 ATP6V1AP38606 617 aa3.71□□□□□ -1.82
MCF2-204ENST00000414978 LINC01559Q495D7 138 aa3.71□□□□□ -1.82
MCF2-204ENST00000414978 SREK1Q8WXA9 508 aaKnown RBP3.71□□□□□ -1.82
MCF2-204ENST00000414978 KCNH8Q96L42 1107 aa3.71□□□□□ -1.82
MCF2-204ENST00000414978 SETDB2Q96T68 719 aa3.71□□□□□ -1.82
MCF2-204ENST00000414978 RBM27Q9P2N5 1060 aaKnown RBP3.71□□□□□ -1.82
MCF2-204ENST00000414978 FKBPLQ9UIM3 349 aa3.71□□□□□ -1.82
MCF2-204ENST00000414978 LOC102724159A0A0B4J2E5 919 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 TNNI2P48788 182 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 PWP2Q15269 919 aaKnown RBP3.7□□□□□ -1.82
MCF2-204ENST00000414978 STAG1Q8WVM7 1258 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 DRC1Q96MC2 740 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 BCL2L12Q9HB09 334 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 PLCH2O75038 1416 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 COPS2P61201 443 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 USP46P62068 366 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 GRIPAP1Q4V328 841 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 PMFBP1Q8TBY8 1022 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 ADAM32Q8TC27 787 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 SGSM3Q96HU1 749 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 GMLQ99445 158 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 SPHKAPQ2M3C7 1700 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 RIMBP2O15034 1052 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 CCDC102BQ68D86 513 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 PIF1Q9H611 641 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 RIPOR2Q9Y4F9 1068 aa3.7□□□□□ -1.82
MCF2-204ENST00000414978 GPR153Q6NV75 609 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 ZBTB33Q86T24 672 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 DHX38Q92620 1227 aaKnown RBP3.69□□□□□ -1.82
MCF2-204ENST00000414978 HIRIP3Q9BW71 556 aaPredicted RBP3.69□□□□□ -1.82
MCF2-204ENST00000414978 TANGO6Q9C0B7 1094 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 DNAAF2Q9NVR5 837 aaKnown RBP3.69□□□□□ -1.82
MCF2-204ENST00000414978 LRRC7Q96NW7 1537 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 KDM5DQ9BY66 1539 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 CDC42BPAQ5VT25 1732 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 SBNO2Q9Y2G9 1366 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 LAMC1P11047 1609 aa3.69□□□□□ -1.82
MCF2-204ENST00000414978 CCDC85CA6NKD9 419 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms