RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 TSPYL6Q8N831 410 aa12.55□□□□□ -0.4
RIF1-202ENST00000414861 SLC52A2Q9HAB3 445 aa12.55□□□□□ -0.4
RIF1-202ENST00000414861 C8orf58Q8NAV2 365 aa12.54□□□□□ -0.4
RIF1-202ENST00000414861 QTRT2Q9H974 415 aaKnown RBP12.54□□□□□ -0.4
RIF1-202ENST00000414861 KCNQ3O43525 872 aa12.54□□□□□ -0.4
RIF1-202ENST00000414861 MARCH10Q8NA82 808 aaPredicted RBP12.54□□□□□ -0.4
RIF1-202ENST00000414861 NFATC2IPQ8NCF5 419 aa12.54□□□□□ -0.4
RIF1-202ENST00000414861 A0A0G2JS52 829 aa12.53□□□□□ -0.4
RIF1-202ENST00000414861 ELL2O00472 640 aaPredicted RBP12.53□□□□□ -0.4
RIF1-202ENST00000414861 MYT1Q01538 1121 aa12.53□□□□□ -0.4
RIF1-202ENST00000414861 BTBD11A6QL63 1104 aa12.53□□□□□ -0.4
RIF1-202ENST00000414861 PAPPAQ13219 1627 aa12.53□□□□□ -0.4
RIF1-202ENST00000414861 BABAM1Q9NWV8 329 aa12.52□□□□□ -0.4
RIF1-202ENST00000414861 SLC39A6Q13433 755 aa12.52□□□□□ -0.41
RIF1-202ENST00000414861 BCL2L13Q9BXK5 485 aa12.52□□□□□ -0.41
RIF1-202ENST00000414861 EP400Q96L91 3159 aa12.52□□□□□ -0.41
RIF1-202ENST00000414861 RNF123Q5XPI4 1314 aa12.52□□□□□ -0.41
RIF1-202ENST00000414861 BRWD3Q6RI45 1802 aa12.52□□□□□ -0.41
RIF1-202ENST00000414861 BCAR3O75815 825 aa12.51□□□□□ -0.41
RIF1-202ENST00000414861 RARSP54136 660 aaKnown RBP12.51□□□□□ -0.41
RIF1-202ENST00000414861 CABP4P57796 275 aa12.51□□□□□ -0.41
RIF1-202ENST00000414861 TWISTNBQ3B726 338 aaPredicted RBP12.51□□□□□ -0.41
RIF1-202ENST00000414861 UBR2Q8IWV8 1755 aa12.51□□□□□ -0.41
RIF1-202ENST00000414861 ERVV-2B6SEH9 535 aa12.51□□□□□ -0.41
RIF1-202ENST00000414861 VAMP4O75379 141 aa12.51□□□□□ -0.41
RIF1-202ENST00000414861 C5P01031 1676 aa12.5□□□□□ -0.41
RIF1-202ENST00000414861 ONECUT3O60422 494 aaPredicted RBP12.5□□□□□ -0.41
RIF1-202ENST00000414861 CT47B1P0C2W7 299 aaPredicted RBP12.5□□□□□ -0.41
RIF1-202ENST00000414861 ZNF772Q68DY9 489 aaPredicted RBP12.5□□□□□ -0.41
RIF1-202ENST00000414861 RGS17Q9UGC6 210 aaPredicted RBP12.5□□□□□ -0.41
RIF1-202ENST00000414861 EIF4A1P60842 406 aaKnown RBP12.5□□□□□ -0.41
RIF1-202ENST00000414861 ZNF790Q6PG37 636 aa12.49□□□□□ -0.41
RIF1-202ENST00000414861 SEPT12Q8IYM1 358 aa12.49□□□□□ -0.41
RIF1-202ENST00000414861 PLIN1O60240 522 aa12.49□□□□□ -0.41
RIF1-202ENST00000414861 RRP1P56182 461 aaKnown RBP12.49□□□□□ -0.41
RIF1-202ENST00000414861 SSH1Q8WYL5 1049 aa12.49□□□□□ -0.41
RIF1-202ENST00000414861 KCPQ6ZWJ8 1503 aa12.48□□□□□ -0.41
RIF1-202ENST00000414861 BCL9O00512 1426 aa12.48□□□□□ -0.41
RIF1-202ENST00000414861 TCERG1O14776 1098 aaKnown RBP12.48□□□□□ -0.41
RIF1-202ENST00000414861 IRX6P78412 446 aaPredicted RBP12.48□□□□□ -0.41
RIF1-202ENST00000414861 FAM182BQ5T319 152 aa12.48□□□□□ -0.41
RIF1-202ENST00000414861 HEG1Q9ULI3 1381 aa12.48□□□□□ -0.41
RIF1-202ENST00000414861 PIGBQ92521 554 aa12.48□□□□□ -0.41
RIF1-202ENST00000414861 ACSBG1Q96GR2 724 aa12.48□□□□□ -0.41
RIF1-202ENST00000414861 TMOD3Q9NYL9 352 aa12.48□□□□□ -0.41
RIF1-202ENST00000414861 SBF2Q86WG5 1849 aa12.47□□□□□ -0.41
RIF1-202ENST00000414861 PRAMEF22A3QJZ6 481 aa12.47□□□□□ -0.41
RIF1-202ENST00000414861 PRIM1P49642 420 aaKnown RBP12.47□□□□□ -0.41
RIF1-202ENST00000414861 SYTL4Q96C24 671 aaPredicted RBP12.47□□□□□ -0.41
RIF1-202ENST00000414861 ZNF496Q96IT1 587 aaPredicted RBP12.47□□□□□ -0.41
RIF1-202ENST00000414861 SMC4Q9NTJ3 1288 aa12.47□□□□□ -0.41
RIF1-202ENST00000414861 RBM6P78332 1123 aaKnown RBP12.46□□□□□ -0.41
RIF1-202ENST00000414861 ASAP1Q9ULH1 1129 aa12.46□□□□□ -0.42
RIF1-202ENST00000414861 NHSQ6T4R5 1651 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 POTEAQ6S8J7 498 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 ILDR1Q86SU0 546 aaPredicted RBP12.45□□□□□ -0.42
RIF1-202ENST00000414861 TTC5Q8N0Z6 440 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 ZNF428Q96B54 188 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 LAMB4A4D0S4 1761 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 CACNA1FO60840 1977 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 KCNQ2O43526 872 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 GIGYF1O75420 1035 aaPredicted RBP12.45□□□□□ -0.42
RIF1-202ENST00000414861 ALDH1L2Q3SY69 923 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 NECTIN2Q92692 538 aa12.45□□□□□ -0.42
RIF1-202ENST00000414861 RGS12O14924 1447 aa12.44□□□□□ -0.42
RIF1-202ENST00000414861 BTAF1O14981 1849 aa12.44□□□□□ -0.42
RIF1-202ENST00000414861 C20orf194Q5TEA3 1177 aa12.44□□□□□ -0.42
RIF1-202ENST00000414861 PTF1AQ7RTS3 328 aa12.44□□□□□ -0.42
RIF1-202ENST00000414861 GTF3C3Q9Y5Q9 886 aa12.44□□□□□ -0.42
RIF1-202ENST00000414861 MRPL50Q8N5N7 158 aaKnown RBP12.44□□□□□ -0.42
RIF1-202ENST00000414861 ATG3Q9NT62 314 aa12.44□□□□□ -0.42
RIF1-202ENST00000414861 TNNQ9UQP3 1299 aa12.44□□□□□ -0.42
RIF1-202ENST00000414861 PTCD1O75127 700 aaKnown RBP12.43□□□□□ -0.42
RIF1-202ENST00000414861 FRAT1Q92837 279 aaPredicted RBP12.43□□□□□ -0.42
RIF1-202ENST00000414861 SOS1Q07889 1333 aaPredicted RBP12.43□□□□□ -0.42
RIF1-202ENST00000414861 HOXB7P09629 217 aa12.43□□□□□ -0.42
RIF1-202ENST00000414861 HDGFL1Q5TGJ6 251 aa12.43□□□□□ -0.42
RIF1-202ENST00000414861 FMNL2Q96PY5 1086 aa12.43□□□□□ -0.42
RIF1-202ENST00000414861 EIF2S2P20042 333 aaKnown RBP12.42□□□□□ -0.42
RIF1-202ENST00000414861 RXRBP28702 533 aa12.42□□□□□ -0.42
RIF1-202ENST00000414861 FKBP8Q14318 412 aa12.42□□□□□ -0.42
RIF1-202ENST00000414861 NEFLP07196 543 aa12.42□□□□□ -0.42
RIF1-202ENST00000414861 BRPF1P55201 1214 aaPredicted RBP12.41□□□□□ -0.42
RIF1-202ENST00000414861 KRT27Q7Z3Y8 459 aa12.41□□□□□ -0.42
RIF1-202ENST00000414861 NOB1Q9ULX3 412 aaKnown RBP12.41□□□□□ -0.42
RIF1-202ENST00000414861 KIF16BQ96L93 1317 aa12.41□□□□□ -0.42
RIF1-202ENST00000414861 TJP1Q07157 1748 aa12.41□□□□□ -0.42
RIF1-202ENST00000414861 CCDC30Q5VVM6 783 aa12.41□□□□□ -0.42
RIF1-202ENST00000414861 SNRPA1P09661 255 aaKnown RBP12.4□□□□□ -0.42
RIF1-202ENST00000414861 TRIM27P14373 513 aa12.4□□□□□ -0.42
RIF1-202ENST00000414861 CANXP27824 592 aaKnown RBP12.4□□□□□ -0.42
RIF1-202ENST00000414861 G2E3Q7L622 706 aa12.4□□□□□ -0.42
RIF1-202ENST00000414861 SLC4A9Q96Q91 983 aa12.4□□□□□ -0.42
RIF1-202ENST00000414861 CHPF2Q9P2E5 772 aa12.4□□□□□ -0.42
RIF1-202ENST00000414861 USP16Q9Y5T5 823 aa12.4□□□□□ -0.42
RIF1-202ENST00000414861 ANXA1P04083 346 aa12.4□□□□□ -0.42
RIF1-202ENST00000414861 SLC4A2P04920 1241 aa12.4□□□□□ -0.42
RIF1-202ENST00000414861 RLBP1P12271 317 aa12.4□□□□□ -0.42
RIF1-202ENST00000414861 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.4□□□□□ -0.42
RIF1-202ENST00000414861 PROSER3Q2NL68 480 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms