RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 PPP1R1BQ9UD71 204 aaPredicted RBP19.87■□□□□ 0.77
LIMS4-201ENST00000413601 NUDCQ9Y266 331 aa19.87■□□□□ 0.77
LIMS4-201ENST00000413601 ZNF831Q5JPB2 1677 aa19.87■□□□□ 0.77
LIMS4-201ENST00000413601 ADAMTS7Q9UKP4 1686 aa19.87■□□□□ 0.77
LIMS4-201ENST00000413601 MTFR1LQ9H019 292 aa19.86■□□□□ 0.77
LIMS4-201ENST00000413601 LGR6Q9HBX8 967 aa19.86■□□□□ 0.77
LIMS4-201ENST00000413601 PTGER2P43116 358 aa19.85■□□□□ 0.77
LIMS4-201ENST00000413601 COL24A1Q17RW2 1714 aa19.85■□□□□ 0.77
LIMS4-201ENST00000413601 RNMTO43148 476 aaKnown RBP19.84■□□□□ 0.77
LIMS4-201ENST00000413601 U2AF1L5P0DN76 240 aaPredicted RBP19.84■□□□□ 0.77
LIMS4-201ENST00000413601 HMGB2P26583 209 aaKnown RBP19.84■□□□□ 0.77
LIMS4-201ENST00000413601 PRKAR2BP31323 418 aa19.84■□□□□ 0.77
LIMS4-201ENST00000413601 ATP6V1AP38606 617 aa19.84■□□□□ 0.77
LIMS4-201ENST00000413601 U2AF1Q01081 240 aaKnown RBP eCLIP19.84■□□□□ 0.77
LIMS4-201ENST00000413601 RSPH6AQ9H0K4 717 aa19.84■□□□□ 0.77
LIMS4-201ENST00000413601 COL5A3P25940 1745 aaPredicted RBP19.84■□□□□ 0.77
LIMS4-201ENST00000413601 ITPK1Q13572 414 aa19.83■□□□□ 0.77
LIMS4-201ENST00000413601 LINC00116Q8NCU8 138 aa19.83■□□□□ 0.77
LIMS4-201ENST00000413601 RBM42Q9BTD8 480 aaKnown RBP19.83■□□□□ 0.77
LIMS4-201ENST00000413601 MRC1P22897 1456 aa19.82■□□□□ 0.76
LIMS4-201ENST00000413601 COL23A1Q86Y22 540 aaPredicted RBP19.82■□□□□ 0.76
LIMS4-201ENST00000413601 SLC16A10Q8TF71 515 aa19.82■□□□□ 0.76
LIMS4-201ENST00000413601 PHACTR3Q96KR7 559 aa19.82■□□□□ 0.76
LIMS4-201ENST00000413601 SIPA1L3O60292 1781 aaPredicted RBP19.81■□□□□ 0.76
LIMS4-201ENST00000413601 RALBP1Q15311 655 aa19.81■□□□□ 0.76
LIMS4-201ENST00000413601 AK7Q96M32 723 aa19.81■□□□□ 0.76
LIMS4-201ENST00000413601 SLC4A9Q96Q91 983 aa19.81■□□□□ 0.76
LIMS4-201ENST00000413601 SGIP1Q9BQI5 828 aa19.81■□□□□ 0.76
LIMS4-201ENST00000413601 SLC52A2Q9HAB3 445 aa19.81■□□□□ 0.76
LIMS4-201ENST00000413601 TJP1Q07157 1748 aa19.8■□□□□ 0.76
LIMS4-201ENST00000413601 GAS2L2Q8NHY3 880 aa19.8■□□□□ 0.76
LIMS4-201ENST00000413601 DLG5Q8TDM6 1919 aa19.8■□□□□ 0.76
LIMS4-201ENST00000413601 MAP3K5Q99683 1374 aa19.8■□□□□ 0.76
LIMS4-201ENST00000413601 MYH14Q7Z406 1995 aaKnown RBP19.79■□□□□ 0.76
LIMS4-201ENST00000413601 GNAT3A8MTJ3 354 aa19.79■□□□□ 0.76
LIMS4-201ENST00000413601 PTCD1O75127 700 aaKnown RBP19.79■□□□□ 0.76
LIMS4-201ENST00000413601 FCHSD2O94868 740 aa19.79■□□□□ 0.76
LIMS4-201ENST00000413601 SMIM5Q71RC9 77 aa19.79■□□□□ 0.76
LIMS4-201ENST00000413601 AMIGO3Q86WK7 504 aa19.79■□□□□ 0.76
LIMS4-201ENST00000413601 PHF14O94880 888 aa19.77■□□□□ 0.76
LIMS4-201ENST00000413601 FLAD1Q8NFF5 587 aa19.77■□□□□ 0.76
LIMS4-201ENST00000413601 UBR2Q8IWV8 1755 aa19.77■□□□□ 0.76
LIMS4-201ENST00000413601 CICQ96RK0 1608 aaPredicted RBP19.76■□□□□ 0.75
LIMS4-201ENST00000413601 SLC39A6Q13433 755 aa19.76■□□□□ 0.75
LIMS4-201ENST00000413601 IL17REQ8NFR9 667 aa19.76■□□□□ 0.75
LIMS4-201ENST00000413601 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.75■□□□□ 0.75
LIMS4-201ENST00000413601 GNPATO15228 680 aa19.75■□□□□ 0.75
LIMS4-201ENST00000413601 ARXQ96QS3 562 aa19.75■□□□□ 0.75
LIMS4-201ENST00000413601 MSL1Q68DK7 614 aa19.74■□□□□ 0.75
LIMS4-201ENST00000413601 MYBBP1AQ9BQG0 1328 aaKnown RBP19.74■□□□□ 0.75
LIMS4-201ENST00000413601 KCPQ6ZWJ8 1503 aa19.73■□□□□ 0.75
LIMS4-201ENST00000413601 SSFA2P28290 1259 aa19.73■□□□□ 0.75
LIMS4-201ENST00000413601 POLD1P28340 1107 aa19.73■□□□□ 0.75
LIMS4-201ENST00000413601 FHDC1Q9C0D6 1143 aaPredicted RBP19.73■□□□□ 0.75
LIMS4-201ENST00000413601 TEFQ10587 303 aa19.72■□□□□ 0.75
LIMS4-201ENST00000413601 C4AP0C0L4 1744 aa19.71■□□□□ 0.75
LIMS4-201ENST00000413601 RC3H1Q5TC82 1133 aaKnown RBP19.71■□□□□ 0.75
LIMS4-201ENST00000413601 CNTNAP4Q9C0A0 1308 aa19.71■□□□□ 0.75
LIMS4-201ENST00000413601 CEMIPQ8WUJ3 1361 aa19.7■□□□□ 0.74
LIMS4-201ENST00000413601 SYT17Q9BSW7 474 aa19.7■□□□□ 0.74
LIMS4-201ENST00000413601 RTCBQ9Y3I0 505 aaKnown RBP19.7■□□□□ 0.74
LIMS4-201ENST00000413601 NEFMP07197 916 aa19.69■□□□□ 0.74
LIMS4-201ENST00000413601 CRKLP46109 303 aaKnown RBP19.69■□□□□ 0.74
LIMS4-201ENST00000413601 DNAJC10Q8IXB1 793 aa19.69■□□□□ 0.74
LIMS4-201ENST00000413601 PLEKHF1Q96S99 279 aa19.69■□□□□ 0.74
LIMS4-201ENST00000413601 PRKRIP1Q9H875 184 aaPredicted RBP19.69■□□□□ 0.74
LIMS4-201ENST00000413601 TRAPPC3LQ5T215 181 aa19.68■□□□□ 0.74
LIMS4-201ENST00000413601 MCM10Q7L590 875 aa19.68■□□□□ 0.74
LIMS4-201ENST00000413601 TTC5Q8N0Z6 440 aa19.68■□□□□ 0.74
LIMS4-201ENST00000413601 KLHL34Q8N239 644 aa19.68■□□□□ 0.74
LIMS4-201ENST00000413601 RTF1Q92541 710 aaKnown RBP19.68■□□□□ 0.74
LIMS4-201ENST00000413601 ZNF316A6NFI3 1004 aaPredicted RBP19.67■□□□□ 0.74
LIMS4-201ENST00000413601 RPS6KA4O75676 772 aa19.67■□□□□ 0.74
LIMS4-201ENST00000413601 DCTN1Q14203 1278 aa19.67■□□□□ 0.74
LIMS4-201ENST00000413601 ZNF790Q6PG37 636 aa19.66■□□□□ 0.74
LIMS4-201ENST00000413601 ARHGEF1Q92888 912 aaKnown RBP19.66■□□□□ 0.74
LIMS4-201ENST00000413601 HTATSF1O43719 755 aaKnown RBP19.65■□□□□ 0.74
LIMS4-201ENST00000413601 INTS5Q6P9B9 1019 aaKnown RBP19.65■□□□□ 0.74
LIMS4-201ENST00000413601 ZNF496Q96IT1 587 aaPredicted RBP19.65■□□□□ 0.74
LIMS4-201ENST00000413601 PNNQ9H307 717 aaKnown RBP19.65■□□□□ 0.74
LIMS4-201ENST00000413601 BTBD11A6QL63 1104 aa19.64■□□□□ 0.73
LIMS4-201ENST00000413601 CYP19A1P11511 503 aaPredicted RBP19.64■□□□□ 0.73
LIMS4-201ENST00000413601 ADRA2BP18089 450 aa19.64■□□□□ 0.73
LIMS4-201ENST00000413601 VSIG10Q8N0Z9 540 aa19.64■□□□□ 0.73
LIMS4-201ENST00000413601 CCDC87Q9NVE4 849 aa19.64■□□□□ 0.73
LIMS4-201ENST00000413601 MAPK8IP3Q9UPT6 1336 aa19.64■□□□□ 0.73
LIMS4-201ENST00000413601 KCNQ3O43525 872 aa19.63■□□□□ 0.73
LIMS4-201ENST00000413601 RFC4P35249 363 aa19.63■□□□□ 0.73
LIMS4-201ENST00000413601 NFE2L2Q16236 605 aa19.63■□□□□ 0.73
LIMS4-201ENST00000413601 HEG1Q9ULI3 1381 aa19.61■□□□□ 0.73
LIMS4-201ENST00000413601 DCAF8L1A6NGE4 600 aa19.61■□□□□ 0.73
LIMS4-201ENST00000413601 KDM3BQ7LBC6 1761 aa19.6■□□□□ 0.73
LIMS4-201ENST00000413601 FMNL2Q96PY5 1086 aa19.6■□□□□ 0.73
LIMS4-201ENST00000413601 GYS1P13807 737 aa19.59■□□□□ 0.73
LIMS4-201ENST00000413601 WDR43Q15061 677 aaKnown RBP eCLIP19.59■□□□□ 0.73
LIMS4-201ENST00000413601 NLGN2Q8NFZ4 835 aa19.59■□□□□ 0.73
LIMS4-201ENST00000413601 ZBTB1Q9Y2K1 713 aa19.59■□□□□ 0.73
LIMS4-201ENST00000413601 SOS1Q07889 1333 aaPredicted RBP19.58■□□□□ 0.73
LIMS4-201ENST00000413601 STARD3NLO95772 234 aa19.58■□□□□ 0.72
LIMS4-201ENST00000413601 TAF7Q15545 349 aaPredicted RBP19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms