RNA–Protein interactions for RNA: ENST00000412507.1

TRIM56-202, Transcript of tripartite motif containing 56, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TRIM56, Length 1,129 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-202ENST00000412507 LGR6Q9HBX8 967 aa25.24■■□□□ 1.63
TRIM56-202ENST00000412507 COL5A3P25940 1745 aaPredicted RBP25.23■■□□□ 1.63
TRIM56-202ENST00000412507 U2AF1L5P0DN76 240 aaPredicted RBP25.23■■□□□ 1.63
TRIM56-202ENST00000412507 U2AF1Q01081 240 aaKnown RBP eCLIP25.23■■□□□ 1.63
TRIM56-202ENST00000412507 RSPH6AQ9H0K4 717 aa25.23■■□□□ 1.63
TRIM56-202ENST00000412507 COL24A1Q17RW2 1714 aa25.23■■□□□ 1.63
TRIM56-202ENST00000412507 PRKAR2BP31323 418 aa25.22■■□□□ 1.63
TRIM56-202ENST00000412507 DLG5Q8TDM6 1919 aa25.22■■□□□ 1.63
TRIM56-202ENST00000412507 SIPA1L3O60292 1781 aaPredicted RBP25.21■■□□□ 1.63
TRIM56-202ENST00000412507 RNMTO43148 476 aaKnown RBP25.21■■□□□ 1.63
TRIM56-202ENST00000412507 RALBP1Q15311 655 aa25.21■■□□□ 1.63
TRIM56-202ENST00000412507 MTFR1LQ9H019 292 aa25.21■■□□□ 1.63
TRIM56-202ENST00000412507 HMGB2P26583 209 aaKnown RBP25.2■■□□□ 1.62
TRIM56-202ENST00000412507 ATP6V1AP38606 617 aa25.2■■□□□ 1.62
TRIM56-202ENST00000412507 RBM42Q9BTD8 480 aaKnown RBP25.2■■□□□ 1.62
TRIM56-202ENST00000412507 PPP1R1BQ9UD71 204 aaPredicted RBP25.2■■□□□ 1.62
TRIM56-202ENST00000412507 MRC1P22897 1456 aa25.2■■□□□ 1.62
TRIM56-202ENST00000412507 MYH14Q7Z406 1995 aaKnown RBP25.19■■□□□ 1.62
TRIM56-202ENST00000412507 ITPK1Q13572 414 aa25.19■■□□□ 1.62
TRIM56-202ENST00000412507 GAS2L2Q8NHY3 880 aa25.19■■□□□ 1.62
TRIM56-202ENST00000412507 PHACTR3Q96KR7 559 aa25.19■■□□□ 1.62
TRIM56-202ENST00000412507 PTGER2P43116 358 aa25.18■■□□□ 1.62
TRIM56-202ENST00000412507 LINC00116Q8NCU8 138 aa25.18■■□□□ 1.62
TRIM56-202ENST00000412507 SLC52A2Q9HAB3 445 aa25.18■■□□□ 1.62
TRIM56-202ENST00000412507 TJP1Q07157 1748 aa25.17■■□□□ 1.62
TRIM56-202ENST00000412507 SLC4A9Q96Q91 983 aa25.17■■□□□ 1.62
TRIM56-202ENST00000412507 MAP3K5Q99683 1374 aa25.17■■□□□ 1.62
TRIM56-202ENST00000412507 FCHSD2O94868 740 aa25.16■■□□□ 1.62
TRIM56-202ENST00000412507 COL23A1Q86Y22 540 aaPredicted RBP25.16■■□□□ 1.62
TRIM56-202ENST00000412507 SLC16A10Q8TF71 515 aa25.16■■□□□ 1.62
TRIM56-202ENST00000412507 AK7Q96M32 723 aa25.16■■□□□ 1.62
TRIM56-202ENST00000412507 GNAT3A8MTJ3 354 aa25.15■■□□□ 1.62
TRIM56-202ENST00000412507 MSH5O43196 834 aa25.15■■□□□ 1.62
TRIM56-202ENST00000412507 UBR2Q8IWV8 1755 aa25.15■■□□□ 1.62
TRIM56-202ENST00000412507 PTCD1O75127 700 aaKnown RBP25.14■■□□□ 1.62
TRIM56-202ENST00000412507 SGIP1Q9BQI5 828 aa25.14■■□□□ 1.62
TRIM56-202ENST00000412507 CICQ96RK0 1608 aaPredicted RBP25.14■■□□□ 1.61
TRIM56-202ENST00000412507 SMIM5Q71RC9 77 aa25.12■■□□□ 1.61
TRIM56-202ENST00000412507 AMIGO3Q86WK7 504 aa25.12■■□□□ 1.61
TRIM56-202ENST00000412507 IL17REQ8NFR9 667 aa25.12■■□□□ 1.61
TRIM56-202ENST00000412507 MYBBP1AQ9BQG0 1328 aaKnown RBP25.12■■□□□ 1.61
TRIM56-202ENST00000412507 SLC39A6Q13433 755 aa25.11■■□□□ 1.61
TRIM56-202ENST00000412507 FLAD1Q8NFF5 587 aa25.11■■□□□ 1.61
TRIM56-202ENST00000412507 PHF14O94880 888 aa25.1■■□□□ 1.61
TRIM56-202ENST00000412507 GNPATO15228 680 aa25.09■■□□□ 1.61
TRIM56-202ENST00000412507 KCPQ6ZWJ8 1503 aa25.08■■□□□ 1.61
TRIM56-202ENST00000412507 TEFQ10587 303 aa25.08■■□□□ 1.61
TRIM56-202ENST00000412507 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.07■■□□□ 1.6
TRIM56-202ENST00000412507 C4AP0C0L4 1744 aa25.06■■□□□ 1.6
TRIM56-202ENST00000412507 ZNF316A6NFI3 1004 aaPredicted RBP25.06■■□□□ 1.6
TRIM56-202ENST00000412507 SSFA2P28290 1259 aa25.06■■□□□ 1.6
TRIM56-202ENST00000412507 MSL1Q68DK7 614 aa25.06■■□□□ 1.6
TRIM56-202ENST00000412507 ARXQ96QS3 562 aa25.06■■□□□ 1.6
TRIM56-202ENST00000412507 PRKRIP1Q9H875 184 aaPredicted RBP25.06■■□□□ 1.6
TRIM56-202ENST00000412507 CEMIPQ8WUJ3 1361 aa25.05■■□□□ 1.6
TRIM56-202ENST00000412507 POLD1P28340 1107 aa25.05■■□□□ 1.6
TRIM56-202ENST00000412507 CNTNAP4Q9C0A0 1308 aa25.05■■□□□ 1.6
TRIM56-202ENST00000412507 NEFMP07197 916 aa25.04■■□□□ 1.6
TRIM56-202ENST00000412507 RC3H1Q5TC82 1133 aaKnown RBP25.04■■□□□ 1.6
TRIM56-202ENST00000412507 PLEKHF1Q96S99 279 aa25.04■■□□□ 1.6
TRIM56-202ENST00000412507 FHDC1Q9C0D6 1143 aaPredicted RBP25.03■■□□□ 1.6
TRIM56-202ENST00000412507 MCM10Q7L590 875 aa25.02■■□□□ 1.6
TRIM56-202ENST00000412507 DNAJC10Q8IXB1 793 aa25.02■■□□□ 1.6
TRIM56-202ENST00000412507 RTF1Q92541 710 aaKnown RBP25.02■■□□□ 1.6
TRIM56-202ENST00000412507 RTCBQ9Y3I0 505 aaKnown RBP25.02■■□□□ 1.6
TRIM56-202ENST00000412507 CRKLP46109 303 aaKnown RBP25.01■■□□□ 1.59
TRIM56-202ENST00000412507 TTC5Q8N0Z6 440 aa25.01■■□□□ 1.59
TRIM56-202ENST00000412507 DCTN1Q14203 1278 aa25■■□□□ 1.59
TRIM56-202ENST00000412507 PNNQ9H307 717 aaKnown RBP25■■□□□ 1.59
TRIM56-202ENST00000412507 RPS6KA4O75676 772 aa24.99■■□□□ 1.59
TRIM56-202ENST00000412507 TRAPPC3LQ5T215 181 aa24.99■■□□□ 1.59
TRIM56-202ENST00000412507 SYT17Q9BSW7 474 aa24.99■■□□□ 1.59
TRIM56-202ENST00000412507 MAPK8IP3Q9UPT6 1336 aa24.98■■□□□ 1.59
TRIM56-202ENST00000412507 HTATSF1O43719 755 aaKnown RBP24.98■■□□□ 1.59
TRIM56-202ENST00000412507 ZNF790Q6PG37 636 aa24.98■■□□□ 1.59
TRIM56-202ENST00000412507 BTBD11A6QL63 1104 aa24.97■■□□□ 1.59
TRIM56-202ENST00000412507 KLHL34Q8N239 644 aa24.97■■□□□ 1.59
TRIM56-202ENST00000412507 NFE2L2Q16236 605 aa24.96■■□□□ 1.59
TRIM56-202ENST00000412507 VSIG10Q8N0Z9 540 aa24.96■■□□□ 1.59
TRIM56-202ENST00000412507 ARHGEF1Q92888 912 aaKnown RBP24.96■■□□□ 1.59
TRIM56-202ENST00000412507 ZNF496Q96IT1 587 aaPredicted RBP24.96■■□□□ 1.59
TRIM56-202ENST00000412507 KCNQ3O43525 872 aa24.95■■□□□ 1.58
TRIM56-202ENST00000412507 CYP19A1P11511 503 aaPredicted RBP24.95■■□□□ 1.58
TRIM56-202ENST00000412507 ADRA2BP18089 450 aa24.95■■□□□ 1.58
TRIM56-202ENST00000412507 INTS5Q6P9B9 1019 aaKnown RBP24.95■■□□□ 1.58
TRIM56-202ENST00000412507 KDM3BQ7LBC6 1761 aa24.95■■□□□ 1.58
TRIM56-202ENST00000412507 CCDC87Q9NVE4 849 aa24.94■■□□□ 1.58
TRIM56-202ENST00000412507 HEG1Q9ULI3 1381 aa24.93■■□□□ 1.58
TRIM56-202ENST00000412507 WDR43Q15061 677 aaKnown RBP eCLIP24.93■■□□□ 1.58
TRIM56-202ENST00000412507 RFC4P35249 363 aa24.92■■□□□ 1.58
TRIM56-202ENST00000412507 FMNL2Q96PY5 1086 aa24.91■■□□□ 1.58
TRIM56-202ENST00000412507 CCDC146Q8IYE0 955 aa24.9■■□□□ 1.58
TRIM56-202ENST00000412507 ZBTB1Q9Y2K1 713 aa24.9■■□□□ 1.58
TRIM56-202ENST00000412507 TAF7Q15545 349 aaPredicted RBP24.89■■□□□ 1.58
TRIM56-202ENST00000412507 THUMPD2Q9BTF0 503 aaKnown RBP24.89■■□□□ 1.58
TRIM56-202ENST00000412507 SOS1Q07889 1333 aaPredicted RBP24.88■■□□□ 1.57
TRIM56-202ENST00000412507 SRP68Q9UHB9 627 aaKnown RBP24.88■■□□□ 1.57
TRIM56-202ENST00000412507 ADAMTS8Q9UP79 889 aa24.88■■□□□ 1.57
TRIM56-202ENST00000412507 KIF13BQ9NQT8 1826 aa24.87■■□□□ 1.57
TRIM56-202ENST00000412507 DCAF8L1A6NGE4 600 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms