RNA–Protein interactions for RNA: ENST00000412218.1

LINC01643-201, Transcript of long intergenic non-protein coding RNA 1643, humanhuman

TSL 5 BASIC

Gene LINC01643, Length 757 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01643-201ENST00000412218 DCAF8L1A6NGE4 600 aa13.73□□□□□ -0.21
LINC01643-201ENST00000412218 MSH5O43196 834 aa13.73□□□□□ -0.21
LINC01643-201ENST00000412218 DIAPH1O60610 1272 aaKnown RBP13.73□□□□□ -0.21
LINC01643-201ENST00000412218 ITPK1Q13572 414 aa13.73□□□□□ -0.21
LINC01643-201ENST00000412218 AMIGO3Q86WK7 504 aa13.73□□□□□ -0.21
LINC01643-201ENST00000412218 FLAD1Q8NFF5 587 aa13.73□□□□□ -0.21
LINC01643-201ENST00000412218 ZNF831Q5JPB2 1677 aa13.72□□□□□ -0.21
LINC01643-201ENST00000412218 HMOX1P09601 288 aa13.72□□□□□ -0.21
LINC01643-201ENST00000412218 ATP6V1AP38606 617 aa13.72□□□□□ -0.21
LINC01643-201ENST00000412218 CABP4P57796 275 aa13.72□□□□□ -0.21
LINC01643-201ENST00000412218 CNGB1Q14028 1251 aaPredicted RBP13.71□□□□□ -0.21
LINC01643-201ENST00000412218 AKAP4Q5JQC9 854 aa13.71□□□□□ -0.21
LINC01643-201ENST00000412218 MSL1Q68DK7 614 aa13.71□□□□□ -0.21
LINC01643-201ENST00000412218 MRC1P22897 1456 aa13.71□□□□□ -0.21
LINC01643-201ENST00000412218 UBR3Q6ZT12 1888 aa13.71□□□□□ -0.21
LINC01643-201ENST00000412218 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.7□□□□□ -0.22
LINC01643-201ENST00000412218 PHF14O94880 888 aa13.7□□□□□ -0.22
LINC01643-201ENST00000412218 SSFA2P28290 1259 aa13.7□□□□□ -0.22
LINC01643-201ENST00000412218 SLC4A9Q96Q91 983 aa13.7□□□□□ -0.22
LINC01643-201ENST00000412218 GNPATO15228 680 aa13.69□□□□□ -0.22
LINC01643-201ENST00000412218 SMIM5Q71RC9 77 aa13.69□□□□□ -0.22
LINC01643-201ENST00000412218 KLHL34Q8N239 644 aa13.69□□□□□ -0.22
LINC01643-201ENST00000412218 ADAMTS7Q9UKP4 1686 aa13.69□□□□□ -0.22
LINC01643-201ENST00000412218 SCN11AQ9UI33 1791 aa13.68□□□□□ -0.22
LINC01643-201ENST00000412218 CICQ96RK0 1608 aaPredicted RBP13.68□□□□□ -0.22
LINC01643-201ENST00000412218 COL5A3P25940 1745 aaPredicted RBP13.68□□□□□ -0.22
LINC01643-201ENST00000412218 YY1P25490 414 aa13.68□□□□□ -0.22
LINC01643-201ENST00000412218 MTHFSDQ2M296 383 aaKnown RBP13.68□□□□□ -0.22
LINC01643-201ENST00000412218 NFATC2IPQ8NCF5 419 aa13.68□□□□□ -0.22
LINC01643-201ENST00000412218 RBM42Q9BTD8 480 aaKnown RBP13.68□□□□□ -0.22
LINC01643-201ENST00000412218 NLGN2Q8NFZ4 835 aa13.67□□□□□ -0.22
LINC01643-201ENST00000412218 CNTNAP4Q9C0A0 1308 aa13.66□□□□□ -0.22
LINC01643-201ENST00000412218 U2SURPO15042 1029 aaKnown RBP13.66□□□□□ -0.22
LINC01643-201ENST00000412218 RNMTO43148 476 aaKnown RBP13.66□□□□□ -0.22
LINC01643-201ENST00000412218 SLC52A2Q9HAB3 445 aa13.66□□□□□ -0.22
LINC01643-201ENST00000412218 LGR6Q9HBX8 967 aa13.66□□□□□ -0.22
LINC01643-201ENST00000412218 TJP1Q07157 1748 aa13.65□□□□□ -0.22
LINC01643-201ENST00000412218 PTCD1O75127 700 aaKnown RBP13.65□□□□□ -0.22
LINC01643-201ENST00000412218 RC3H1Q5TC82 1133 aaKnown RBP13.65□□□□□ -0.22
LINC01643-201ENST00000412218 CFAP53Q96M91 514 aa13.65□□□□□ -0.22
LINC01643-201ENST00000412218 PPP2R1AP30153 589 aa13.64□□□□□ -0.23
LINC01643-201ENST00000412218 RTCBQ9Y3I0 505 aaKnown RBP13.64□□□□□ -0.23
LINC01643-201ENST00000412218 KCPQ6ZWJ8 1503 aa13.64□□□□□ -0.23
LINC01643-201ENST00000412218 ADRA2BP18089 450 aa13.63□□□□□ -0.23
LINC01643-201ENST00000412218 CD2APQ9Y5K6 639 aa13.63□□□□□ -0.23
LINC01643-201ENST00000412218 CENPBP07199 599 aaPredicted RBP13.62□□□□□ -0.23
LINC01643-201ENST00000412218 GPR162Q16538 588 aa13.62□□□□□ -0.23
LINC01643-201ENST00000412218 TRAPPC3LQ5T215 181 aa13.62□□□□□ -0.23
LINC01643-201ENST00000412218 MIER1Q8N108 512 aa13.62□□□□□ -0.23
LINC01643-201ENST00000412218 GAS2L2Q8NHY3 880 aa13.62□□□□□ -0.23
LINC01643-201ENST00000412218 RSPH6AQ9H0K4 717 aa13.62□□□□□ -0.23
LINC01643-201ENST00000412218 RPS6KA4O75676 772 aa13.61□□□□□ -0.23
LINC01643-201ENST00000412218 CRKLP46109 303 aaKnown RBP13.61□□□□□ -0.23
LINC01643-201ENST00000412218 ARHGEF1Q92888 912 aaKnown RBP13.61□□□□□ -0.23
LINC01643-201ENST00000412218 C4AP0C0L4 1744 aa13.6□□□□□ -0.23
LINC01643-201ENST00000412218 PRKAR2BP31323 418 aa13.6□□□□□ -0.23
LINC01643-201ENST00000412218 SLC39A6Q13433 755 aa13.6□□□□□ -0.23
LINC01643-201ENST00000412218 PIAS4Q8N2W9 510 aaPredicted RBP13.6□□□□□ -0.23
LINC01643-201ENST00000412218 NUDCQ9Y266 331 aa13.6□□□□□ -0.23
LINC01643-201ENST00000412218 UBR2Q8IWV8 1755 aa13.59□□□□□ -0.23
LINC01643-201ENST00000412218 GNAT3A8MTJ3 354 aa13.59□□□□□ -0.23
LINC01643-201ENST00000412218 MMP10P09238 476 aa13.59□□□□□ -0.23
LINC01643-201ENST00000412218 YBX3P16989 372 aaKnown RBP eCLIP13.59□□□□□ -0.23
LINC01643-201ENST00000412218 DNAJC10Q8IXB1 793 aa13.59□□□□□ -0.23
LINC01643-201ENST00000412218 PELP1Q8IZL8 1130 aaKnown RBP13.59□□□□□ -0.23
LINC01643-201ENST00000412218 PHACTR3Q96KR7 559 aa13.59□□□□□ -0.23
LINC01643-201ENST00000412218 CEMIPQ8WUJ3 1361 aa13.58□□□□□ -0.23
LINC01643-201ENST00000412218 VIRMAQ69YN4 1812 aaKnown RBP13.58□□□□□ -0.24
LINC01643-201ENST00000412218 GYS1P13807 737 aa13.58□□□□□ -0.24
LINC01643-201ENST00000412218 RFC4P35249 363 aa13.58□□□□□ -0.24
LINC01643-201ENST00000412218 INTS5Q6P9B9 1019 aaKnown RBP13.58□□□□□ -0.24
LINC01643-201ENST00000412218 IL17REQ8NFR9 667 aa13.58□□□□□ -0.24
LINC01643-201ENST00000412218 U2AF1L5P0DN76 240 aaPredicted RBP13.57□□□□□ -0.24
LINC01643-201ENST00000412218 CYP19A1P11511 503 aaPredicted RBP13.57□□□□□ -0.24
LINC01643-201ENST00000412218 U2AF1Q01081 240 aaKnown RBP eCLIP13.57□□□□□ -0.24
LINC01643-201ENST00000412218 VSIG10Q8N0Z9 540 aa13.57□□□□□ -0.24
LINC01643-201ENST00000412218 NLGN1Q8N2Q7 840 aa13.57□□□□□ -0.24
LINC01643-201ENST00000412218 CCDC87Q9NVE4 849 aa13.57□□□□□ -0.24
LINC01643-201ENST00000412218 MYH14Q7Z406 1995 aaKnown RBP13.57□□□□□ -0.24
LINC01643-201ENST00000412218 SIPA1L3O60292 1781 aaPredicted RBP13.57□□□□□ -0.24
LINC01643-201ENST00000412218 USP42Q9H9J4 1324 aaKnown RBP13.57□□□□□ -0.24
LINC01643-201ENST00000412218 C10orf71Q711Q0 1435 aa13.56□□□□□ -0.24
LINC01643-201ENST00000412218 FCHSD2O94868 740 aa13.56□□□□□ -0.24
LINC01643-201ENST00000412218 TEFQ10587 303 aa13.56□□□□□ -0.24
LINC01643-201ENST00000412218 SOS1Q07889 1333 aaPredicted RBP13.56□□□□□ -0.24
LINC01643-201ENST00000412218 GRIN3BO60391 1043 aa13.55□□□□□ -0.24
LINC01643-201ENST00000412218 TTC5Q8N0Z6 440 aa13.55□□□□□ -0.24
LINC01643-201ENST00000412218 SRP68Q9UHB9 627 aaKnown RBP13.55□□□□□ -0.24
LINC01643-201ENST00000412218 PXDNLA1KZ92 1463 aa13.55□□□□□ -0.24
LINC01643-201ENST00000412218 KIAA1551Q9HCM1 1747 aa13.54□□□□□ -0.24
LINC01643-201ENST00000412218 ZNF790Q6PG37 636 aa13.54□□□□□ -0.24
LINC01643-201ENST00000412218 ZNF784Q8NCA9 323 aaPredicted RBP13.54□□□□□ -0.24
LINC01643-201ENST00000412218 ZBTB1Q9Y2K1 713 aa13.54□□□□□ -0.24
LINC01643-201ENST00000412218 COL15A1P39059 1388 aa13.54□□□□□ -0.24
LINC01643-201ENST00000412218 KIF13BQ9NQT8 1826 aa13.53□□□□□ -0.24
LINC01643-201ENST00000412218 FKBP8Q14318 412 aa13.53□□□□□ -0.24
LINC01643-201ENST00000412218 ZNF496Q96IT1 587 aaPredicted RBP13.53□□□□□ -0.24
LINC01643-201ENST00000412218 HEG1Q9ULI3 1381 aa13.53□□□□□ -0.24
LINC01643-201ENST00000412218 UTRNP46939 3433 aa13.53□□□□□ -0.24
LINC01643-201ENST00000412218 PARP3Q9Y6F1 533 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms