RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 ELL2O00472 640 aaPredicted RBP17.06■□□□□ 0.32
LIMS1-205ENST00000410093 USP19O94966 1318 aa17.06■□□□□ 0.32
LIMS1-205ENST00000410093 LMO7Q8WWI1 1683 aa17.05■□□□□ 0.32
LIMS1-205ENST00000410093 CAMTA1Q9Y6Y1 1673 aa17.05■□□□□ 0.32
LIMS1-205ENST00000410093 AMOTQ4VCS5 1084 aa17.05■□□□□ 0.32
LIMS1-205ENST00000410093 ABCC6O95255 1503 aa17.04■□□□□ 0.32
LIMS1-205ENST00000410093 TAF7Q15545 349 aaPredicted RBP17.04■□□□□ 0.32
LIMS1-205ENST00000410093 N4BP2Q86UW6 1770 aaPredicted RBP17.04■□□□□ 0.32
LIMS1-205ENST00000410093 ALS2Q96Q42 1657 aa17.04■□□□□ 0.32
LIMS1-205ENST00000410093 UNC5CLQ8IV45 518 aa17.03■□□□□ 0.32
LIMS1-205ENST00000410093 RPAP2Q8IXW5 612 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-205ENST00000410093 STK31Q9BXU1 1019 aa17.03■□□□□ 0.32
LIMS1-205ENST00000410093 HOXB7P09629 217 aa17.02■□□□□ 0.32
LIMS1-205ENST00000410093 CCT4P50991 539 aaKnown RBP17.02■□□□□ 0.32
LIMS1-205ENST00000410093 CCDC30Q5VVM6 783 aa17.02■□□□□ 0.32
LIMS1-205ENST00000410093 NUTM2GQ5VZR2 741 aa17.02■□□□□ 0.32
LIMS1-205ENST00000410093 ARHGEF25Q86VW2 580 aa17.02■□□□□ 0.32
LIMS1-205ENST00000410093 CHD1LQ86WJ1 897 aa17.02■□□□□ 0.32
LIMS1-205ENST00000410093 FAM208AQ9UK61 1670 aaKnown RBP17.02■□□□□ 0.31
LIMS1-205ENST00000410093 CEMIPQ8WUJ3 1361 aa17.02■□□□□ 0.31
LIMS1-205ENST00000410093 GCP02774 474 aa17.01■□□□□ 0.31
LIMS1-205ENST00000410093 RGS12O14924 1447 aa17.01■□□□□ 0.31
LIMS1-205ENST00000410093 PLEKHO1Q53GL0 409 aaPredicted RBP17.01■□□□□ 0.31
LIMS1-205ENST00000410093 GJD4Q96KN9 370 aaPredicted RBP17.01■□□□□ 0.31
LIMS1-205ENST00000410093 CCDC9Q9Y3X0 531 aaKnown RBP17.01■□□□□ 0.31
LIMS1-205ENST00000410093 ATRNO75882 1429 aa17■□□□□ 0.31
LIMS1-205ENST00000410093 PXDNLA1KZ92 1463 aa17■□□□□ 0.31
LIMS1-205ENST00000410093 BCL9LQ86UU0 1499 aa17■□□□□ 0.31
LIMS1-205ENST00000410093 BECN1Q14457 450 aa17■□□□□ 0.31
LIMS1-205ENST00000410093 USP35Q9P2H5 1018 aa17■□□□□ 0.31
LIMS1-205ENST00000410093 SLC4A2P04920 1241 aa16.99■□□□□ 0.31
LIMS1-205ENST00000410093 KDM3BQ7LBC6 1761 aa16.98■□□□□ 0.31
LIMS1-205ENST00000410093 AKAP4Q5JQC9 854 aa16.98■□□□□ 0.31
LIMS1-205ENST00000410093 BMP2KLQ5H9B9 411 aa16.97■□□□□ 0.31
LIMS1-205ENST00000410093 ANKRD44Q8N8A2 993 aa16.97■□□□□ 0.31
LIMS1-205ENST00000410093 IL17REQ8NFR9 667 aa16.97■□□□□ 0.31
LIMS1-205ENST00000410093 UPF1Q92900 1129 aaKnown RBP eCLIP16.97■□□□□ 0.31
LIMS1-205ENST00000410093 SLIT2O94813 1529 aa16.97■□□□□ 0.31
LIMS1-205ENST00000410093 HMMRO75330 724 aa16.96■□□□□ 0.31
LIMS1-205ENST00000410093 NBPF6Q5VWK0 638 aa16.96■□□□□ 0.31
LIMS1-205ENST00000410093 LTV1Q96GA3 475 aaPredicted RBP16.96■□□□□ 0.31
LIMS1-205ENST00000410093 NBPF4Q96M43 638 aa16.96■□□□□ 0.31
LIMS1-205ENST00000410093 DCTPP1Q9H773 170 aa16.96■□□□□ 0.31
LIMS1-205ENST00000410093 PRDM11Q9NQV5 511 aa16.96■□□□□ 0.31
LIMS1-205ENST00000410093 RGPD2P0DJD1 1756 aa16.96■□□□□ 0.31
LIMS1-205ENST00000410093 TBC1D32Q96NH3 1257 aa16.96■□□□□ 0.3
LIMS1-205ENST00000410093 VPS72Q15906 364 aa16.95■□□□□ 0.3
LIMS1-205ENST00000410093 BTG4Q9NY30 223 aa16.95■□□□□ 0.3
LIMS1-205ENST00000410093 ADAMTS7Q9UKP4 1686 aa16.93■□□□□ 0.3
LIMS1-205ENST00000410093 A0A0G2JS52 829 aa16.93■□□□□ 0.3
LIMS1-205ENST00000410093 GNAI3P08754 354 aa16.93■□□□□ 0.3
LIMS1-205ENST00000410093 KRT24Q2M2I5 525 aa16.93■□□□□ 0.3
LIMS1-205ENST00000410093 ANKRD45Q5TZF3 282 aa16.93■□□□□ 0.3
LIMS1-205ENST00000410093 SIRT2Q8IXJ6 389 aa16.93■□□□□ 0.3
LIMS1-205ENST00000410093 ATP10DQ9P241 1426 aa16.93■□□□□ 0.3
LIMS1-205ENST00000410093 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.93■□□□□ 0.3
LIMS1-205ENST00000410093 C1orf141Q5JVX7 400 aa16.92■□□□□ 0.3
LIMS1-205ENST00000410093 ANKRD24Q8TF21 1146 aa16.92■□□□□ 0.3
LIMS1-205ENST00000410093 ZC3H6P61129 1189 aaKnown RBP16.91■□□□□ 0.3
LIMS1-205ENST00000410093 RTL5Q5HYW3 569 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-205ENST00000410093 ABCA3Q99758 1704 aa16.91■□□□□ 0.3
LIMS1-205ENST00000410093 LNPKQ9C0E8 428 aa16.91■□□□□ 0.3
LIMS1-205ENST00000410093 MIS18AQ9NYP9 233 aa16.91■□□□□ 0.3
LIMS1-205ENST00000410093 SIPA1L3O60292 1781 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-205ENST00000410093 TEFQ10587 303 aa16.91■□□□□ 0.3
LIMS1-205ENST00000410093 FLIIQ13045 1269 aa16.91■□□□□ 0.3
LIMS1-205ENST00000410093 CEP85Q6P2H3 762 aa16.91■□□□□ 0.3
LIMS1-205ENST00000410093 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.91■□□□□ 0.3
LIMS1-205ENST00000410093 NWD2Q9ULI1 1742 aa16.9■□□□□ 0.3
LIMS1-205ENST00000410093 ZNF530Q6P9A1 599 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-205ENST00000410093 CRYBG1Q9Y4K1 1723 aa16.9■□□□□ 0.3
LIMS1-205ENST00000410093 PLCH1Q4KWH8 1693 aa16.89■□□□□ 0.29
LIMS1-205ENST00000410093 SEC24BO95487 1268 aa16.89■□□□□ 0.29
LIMS1-205ENST00000410093 GNAI2P04899 355 aa16.89■□□□□ 0.29
LIMS1-205ENST00000410093 EVA1CP58658 441 aa16.89■□□□□ 0.29
LIMS1-205ENST00000410093 C1orf115Q9H7X2 142 aa16.89■□□□□ 0.29
LIMS1-205ENST00000410093 COL18A1P39060 1754 aa16.89■□□□□ 0.29
LIMS1-205ENST00000410093 RGPD5Q99666 1765 aa16.89■□□□□ 0.29
LIMS1-205ENST00000410093 COL14A1Q05707 1796 aaKnown RBP16.88■□□□□ 0.29
LIMS1-205ENST00000410093 EIF4A1P60842 406 aaKnown RBP16.88■□□□□ 0.29
LIMS1-205ENST00000410093 USHBP1Q8N6Y0 703 aa16.88■□□□□ 0.29
LIMS1-205ENST00000410093 ERBB3P21860 1342 aa16.88■□□□□ 0.29
LIMS1-205ENST00000410093 FKBP5Q13451 457 aaPredicted RBP16.87■□□□□ 0.29
LIMS1-205ENST00000410093 CHRNA2Q15822 529 aa16.87■□□□□ 0.29
LIMS1-205ENST00000410093 HDGFL1Q5TGJ6 251 aa16.87■□□□□ 0.29
LIMS1-205ENST00000410093 SEPT12Q8IYM1 358 aa16.87■□□□□ 0.29
LIMS1-205ENST00000410093 C22orf23Q9BZE7 217 aa16.87■□□□□ 0.29
LIMS1-205ENST00000410093 STRN4Q9NRL3 753 aa16.87■□□□□ 0.29
LIMS1-205ENST00000410093 CPDO75976 1380 aa16.87■□□□□ 0.29
LIMS1-205ENST00000410093 RNMTO43148 476 aaKnown RBP16.86■□□□□ 0.29
LIMS1-205ENST00000410093 HDAC5Q9UQL6 1122 aa16.86■□□□□ 0.29
LIMS1-205ENST00000410093 ZBTB7CA1YPR0 619 aa16.86■□□□□ 0.29
LIMS1-205ENST00000410093 BTBD11A6QL63 1104 aa16.86■□□□□ 0.29
LIMS1-205ENST00000410093 MEIS3Q99687 375 aa16.86■□□□□ 0.29
LIMS1-205ENST00000410093 SCN11AQ9UI33 1791 aa16.85■□□□□ 0.29
LIMS1-205ENST00000410093 RBM25P49756 843 aaKnown RBP16.85■□□□□ 0.29
LIMS1-205ENST00000410093 FAM98CQ17RN3 349 aaKnown RBP16.85■□□□□ 0.29
LIMS1-205ENST00000410093 G2E3Q7L622 706 aa16.85■□□□□ 0.29
LIMS1-205ENST00000410093 CCDC125Q86Z20 511 aa16.85■□□□□ 0.29
LIMS1-205ENST00000410093 IBTKQ9P2D0 1353 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms