RNA–Protein interactions for RNA: ENST00000410080.5

PRPF40A-202, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PRPF40A, Length 8,048 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-202ENST00000410080 DNA2P51530 1060 aa13.13□□□□□ -0.31
PRPF40A-202ENST00000410080 ERBINQ96RT1 1412 aa13.13□□□□□ -0.31
PRPF40A-202ENST00000410080 LMAN1P49257 510 aa13.13□□□□□ -0.31
PRPF40A-202ENST00000410080 MPNDQ8N594 471 aa13.13□□□□□ -0.31
PRPF40A-202ENST00000410080 IQCEQ6IPM2 695 aa13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 BCCIPQ9P287 314 aaKnown RBP eCLIP13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 GSTTP1A0A1W2PQM5 241 aa13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 ANKLE2Q86XL3 938 aa13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 RTEL1-TNFRSF6BF6WH68 1400 aa13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 SUPT6HQ7KZ85 1726 aaKnown RBP13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 ZNF444Q8N0Y2 327 aaPredicted RBP13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 MIS18AQ9NYP9 233 aa13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 PLS1Q14651 629 aa13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 TAF4BQ92750 862 aa13.12□□□□□ -0.31
PRPF40A-202ENST00000410080 CC2D2AQ9P2K1 1620 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 CBX1P83916 185 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 C6orf229H3BNL8 230 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 HECW1Q76N89 1606 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 SERPINA10Q9UK55 444 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 C9orf84Q5VXU9 1444 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 SMC1AQ14683 1233 aaKnown RBP13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 EHMT1Q9H9B1 1298 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 CFAP45Q9UL16 551 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 BCAR3O75815 825 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 LARP1Q6PKG0 1096 aaKnown RBP13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 TSG101Q99816 390 aa13.11□□□□□ -0.31
PRPF40A-202ENST00000410080 SNAPC4Q5SXM2 1469 aa13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 GIGYF2Q6Y7W6 1299 aaKnown RBP13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 KLHL10Q6JEL2 608 aa13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 HOOK3Q86VS8 718 aa13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 CKAP2LQ8IYA6 745 aa13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 CEP126Q9P2H0 1117 aa13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 MYO1BO43795 1136 aa13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 RANBP6O60518 1105 aaKnown RBP13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 BICD1Q96G01 975 aa13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 BIN2Q9UBW5 565 aaPredicted RBP13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 CEP131Q9UPN4 1083 aa13.1□□□□□ -0.31
PRPF40A-202ENST00000410080 IMMTQ16891 758 aaKnown RBP13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 LARP1BQ659C4 914 aaKnown RBP13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 SPTY2D1Q68D10 685 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 USP8P40818 1118 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 CACNA2D4Q7Z3S7 1137 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 CCDC82Q8N4S0 544 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 MMRN2Q9H8L6 949 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 MPHOSPH6Q99547 160 aaKnown RBP13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 RFX1P22670 979 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 SYCP3Q8IZU3 236 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 CASKIN1Q8WXD9 1431 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 USHBP1Q8N6Y0 703 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 VAT1LQ9HCJ6 419 aa13.09□□□□□ -0.31
PRPF40A-202ENST00000410080 MRC2Q9UBG0 1479 aa13.08□□□□□ -0.31
PRPF40A-202ENST00000410080 CCDC192P0DO97 292 aa13.08□□□□□ -0.32
PRPF40A-202ENST00000410080 PPM1EQ8WY54 764 aa13.08□□□□□ -0.32
PRPF40A-202ENST00000410080 CBFA2T2O43439 604 aa13.08□□□□□ -0.32
PRPF40A-202ENST00000410080 DDX11Q96FC9 970 aa13.08□□□□□ -0.32
PRPF40A-202ENST00000410080 PDZRN3Q9UPQ7 1066 aa13.08□□□□□ -0.32
PRPF40A-202ENST00000410080 SRGAP3O43295 1099 aa13.08□□□□□ -0.32
PRPF40A-202ENST00000410080 CCT4P50991 539 aaKnown RBP13.08□□□□□ -0.32
PRPF40A-202ENST00000410080 OTUD6BQ8N6M0 293 aa13.07□□□□□ -0.32
PRPF40A-202ENST00000410080 WASF1Q92558 559 aa13.07□□□□□ -0.32
PRPF40A-202ENST00000410080 JAKMIP1Q96N16 626 aaKnown RBP13.07□□□□□ -0.32
PRPF40A-202ENST00000410080 SYNCQ9H7C4 482 aa13.07□□□□□ -0.32
PRPF40A-202ENST00000410080 AEBP1Q8IUX7 1158 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 RFC4P35249 363 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 ERICH3Q5RHP9 1530 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 TMCO5BA8MYB1 307 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 NLRP5P59047 1200 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 BLOC1S2Q6QNY1 142 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 CCDC102AQ96A19 550 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 SPATA32Q96LK8 384 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 NAPBQ9H115 298 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 EIF3JO75822 258 aaKnown RBP13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 CASTP20810 708 aaKnown RBP13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 CTNNA3Q9UI47 895 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 EHBP1L1Q8N3D4 1523 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 SYNJ1O43426 1573 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 DPH6Q7L8W6 267 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 CCDC148Q8NFR7 591 aa13.06□□□□□ -0.32
PRPF40A-202ENST00000410080 SPA17Q15506 151 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 MCM2P49736 904 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 SLF2Q8IX21 1173 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 FERP16591 822 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 ST5P78524 1137 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 PDRG1Q9NUG6 133 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 TMEM266Q2M3C6 531 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 CCDC144CPQ8IYA2 1237 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 TMX1Q9H3N1 280 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 BRD4O60885 1362 aaPredicted RBP13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 ZWINTO95229 277 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 KRT85P78386 507 aa13.05□□□□□ -0.32
PRPF40A-202ENST00000410080 IFFO1Q0D2I5 559 aa13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 PNISRQ8TF01 805 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 TSNARE1Q96NA8 513 aa13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 FKBP15Q5T1M5 1219 aa13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 KIF20AO95235 890 aa13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 UTP14AQ9BVJ6 771 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 TAF12Q16514 161 aa13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 CAMK4Q16566 473 aa13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 WAPLQ7Z5K2 1190 aa13.04□□□□□ -0.32
PRPF40A-202ENST00000410080 SRCIN1Q9C0H9 1055 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms