RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 GOLGA2Q08379 1002 aa26.74■■□□□ 1.87
VSX1-203ENST00000409285 BABAM1Q9NWV8 329 aa26.74■■□□□ 1.87
VSX1-203ENST00000409285 TEFQ10587 303 aa26.74■■□□□ 1.87
VSX1-203ENST00000409285 IFT57Q9NWB7 429 aa26.74■■□□□ 1.87
VSX1-203ENST00000409285 ZNF853P0CG23 659 aa26.73■■□□□ 1.87
VSX1-203ENST00000409285 CFAP44Q96MT7 982 aa26.73■■□□□ 1.87
VSX1-203ENST00000409285 TNS1Q9HBL0 1735 aaKnown RBP26.71■■□□□ 1.87
VSX1-203ENST00000409285 GNAI1P63096 354 aa26.71■■□□□ 1.87
VSX1-203ENST00000409285 TAF7Q15545 349 aaPredicted RBP26.71■■□□□ 1.87
VSX1-203ENST00000409285 FAM196AQ6ZSG2 479 aa26.71■■□□□ 1.87
VSX1-203ENST00000409285 CICQ96RK0 1608 aaPredicted RBP26.7■■□□□ 1.87
VSX1-203ENST00000409285 CABP4P57796 275 aa26.7■■□□□ 1.87
VSX1-203ENST00000409285 ZNF831Q5JPB2 1677 aa26.7■■□□□ 1.86
VSX1-203ENST00000409285 E9PSI1 815 aa26.69■■□□□ 1.86
VSX1-203ENST00000409285 CHL1O00533 1208 aa26.69■■□□□ 1.86
VSX1-203ENST00000409285 LY75O60449 1722 aa26.69■■□□□ 1.86
VSX1-203ENST00000409285 NFATC2IPQ8NCF5 419 aa26.68■■□□□ 1.86
VSX1-203ENST00000409285 TMOD3Q9NYL9 352 aa26.68■■□□□ 1.86
VSX1-203ENST00000409285 RGPD3A6NKT7 1758 aaPredicted RBP26.68■■□□□ 1.86
VSX1-203ENST00000409285 RGPD4Q7Z3J3 1758 aa26.68■■□□□ 1.86
VSX1-203ENST00000409285 SLFN5Q08AF3 891 aa26.68■■□□□ 1.86
VSX1-203ENST00000409285 TRMT2AQ8IZ69 625 aaKnown RBP26.68■■□□□ 1.86
VSX1-203ENST00000409285 UPF1Q92900 1129 aaKnown RBP eCLIP26.67■■□□□ 1.86
VSX1-203ENST00000409285 MYH16Q9H6N6 1097 aa26.67■■□□□ 1.86
VSX1-203ENST00000409285 SPINK5Q9NQ38 1064 aaPredicted RBP26.67■■□□□ 1.86
VSX1-203ENST00000409285 LAMB4A4D0S4 1761 aa26.66■■□□□ 1.86
VSX1-203ENST00000409285 PRIM1P49642 420 aaKnown RBP26.66■■□□□ 1.86
VSX1-203ENST00000409285 FAM182BQ5T319 152 aa26.66■■□□□ 1.86
VSX1-203ENST00000409285 KCPQ6ZWJ8 1503 aa26.65■■□□□ 1.86
VSX1-203ENST00000409285 FANCIQ9NVI1 1328 aa26.64■■□□□ 1.86
VSX1-203ENST00000409285 BTBD11A6QL63 1104 aa26.64■■□□□ 1.86
VSX1-203ENST00000409285 PIGBQ92521 554 aa26.64■■□□□ 1.86
VSX1-203ENST00000409285 CDCA7LQ96GN5 454 aa26.64■■□□□ 1.86
VSX1-203ENST00000409285 MBIPQ9NS73 344 aa26.63■■□□□ 1.85
VSX1-203ENST00000409285 C5P01031 1676 aa26.63■■□□□ 1.85
VSX1-203ENST00000409285 CACNA1FO60840 1977 aa26.62■■□□□ 1.85
VSX1-203ENST00000409285 ACSBG1Q96GR2 724 aa26.62■■□□□ 1.85
VSX1-203ENST00000409285 TSPYL4Q9UJ04 414 aa26.62■■□□□ 1.85
VSX1-203ENST00000409285 DUSP27Q5VZP5 1158 aa26.62■■□□□ 1.85
VSX1-203ENST00000409285 ZNF790Q6PG37 636 aa26.61■■□□□ 1.85
VSX1-203ENST00000409285 SYTL4Q96C24 671 aaPredicted RBP26.61■■□□□ 1.85
VSX1-203ENST00000409285 BCL11BQ9C0K0 894 aaPredicted RBP26.61■■□□□ 1.85
VSX1-203ENST00000409285 KCNQ2O43526 872 aa26.6■■□□□ 1.85
VSX1-203ENST00000409285 LAS1LQ9Y4W2 734 aaKnown RBP26.6■■□□□ 1.85
VSX1-203ENST00000409285 TJP1Q07157 1748 aa26.59■■□□□ 1.85
VSX1-203ENST00000409285 HEG1Q9ULI3 1381 aa26.59■■□□□ 1.85
VSX1-203ENST00000409285 TAF1LQ8IZX4 1826 aa26.58■■□□□ 1.85
VSX1-203ENST00000409285 TSR2Q969E8 191 aaKnown RBP26.58■■□□□ 1.85
VSX1-203ENST00000409285 MIS18AQ9NYP9 233 aa26.58■■□□□ 1.85
VSX1-203ENST00000409285 COL5A3P25940 1745 aaPredicted RBP26.58■■□□□ 1.85
VSX1-203ENST00000409285 CCDC125Q86Z20 511 aa26.57■■□□□ 1.84
VSX1-203ENST00000409285 TTC5Q8N0Z6 440 aa26.55■■□□□ 1.84
VSX1-203ENST00000409285 ATG3Q9NT62 314 aa26.55■■□□□ 1.84
VSX1-203ENST00000409285 EIF4A1P60842 406 aaKnown RBP26.55■■□□□ 1.84
VSX1-203ENST00000409285 ASAP1Q9ULH1 1129 aa26.55■■□□□ 1.84
VSX1-203ENST00000409285 SOS1Q07889 1333 aaPredicted RBP26.54■■□□□ 1.84
VSX1-203ENST00000409285 SLC39A6Q13433 755 aa26.54■■□□□ 1.84
VSX1-203ENST00000409285 SMARCC1Q92922 1105 aaPredicted RBP26.54■■□□□ 1.84
VSX1-203ENST00000409285 PTF1AQ7RTS3 328 aa26.53■■□□□ 1.84
VSX1-203ENST00000409285 PALLDQ8WX93 1383 aa26.52■■□□□ 1.84
VSX1-203ENST00000409285 KCNQ3O43525 872 aa26.52■■□□□ 1.84
VSX1-203ENST00000409285 TRIM37O94972 964 aa26.52■■□□□ 1.84
VSX1-203ENST00000409285 FMNL2Q96PY5 1086 aa26.52■■□□□ 1.84
VSX1-203ENST00000409285 SF3B2Q13435 895 aaKnown RBP26.51■■□□□ 1.83
VSX1-203ENST00000409285 RREB1Q92766 1687 aa26.5■■□□□ 1.83
VSX1-203ENST00000409285 HOXB7P09629 217 aa26.5■■□□□ 1.83
VSX1-203ENST00000409285 CT47B1P0C2W7 299 aaPredicted RBP26.5■■□□□ 1.83
VSX1-203ENST00000409285 VSIG10Q8N0Z9 540 aa26.5■■□□□ 1.83
VSX1-203ENST00000409285 ZNF496Q96IT1 587 aaPredicted RBP26.5■■□□□ 1.83
VSX1-203ENST00000409285 EXOSC9Q06265 439 aaKnown RBP26.49■■□□□ 1.83
VSX1-203ENST00000409285 GIGYF1O75420 1035 aaPredicted RBP26.47■■□□□ 1.83
VSX1-203ENST00000409285 C8orf58Q8NAV2 365 aa26.47■■□□□ 1.83
VSX1-203ENST00000409285 ZNF428Q96B54 188 aa26.45■■□□□ 1.82
VSX1-203ENST00000409285 SNRPA1P09661 255 aaKnown RBP26.44■■□□□ 1.82
VSX1-203ENST00000409285 KRT24Q2M2I5 525 aa26.44■■□□□ 1.82
VSX1-203ENST00000409285 TWISTNBQ3B726 338 aaPredicted RBP26.44■■□□□ 1.82
VSX1-203ENST00000409285 MYH14Q7Z406 1995 aaKnown RBP26.44■■□□□ 1.82
VSX1-203ENST00000409285 LOC102724428A0A0B4J2F2 783 aa26.43■■□□□ 1.82
VSX1-203ENST00000409285 PLSCR1O15162 318 aa26.43■■□□□ 1.82
VSX1-203ENST00000409285 PTCD1O75127 700 aaKnown RBP26.43■■□□□ 1.82
VSX1-203ENST00000409285 SIK1P57059 783 aa26.43■■□□□ 1.82
VSX1-203ENST00000409285 TSPYL6Q8N831 410 aa26.43■■□□□ 1.82
VSX1-203ENST00000409285 CHMP4AQ9BY43 222 aa26.42■■□□□ 1.82
VSX1-203ENST00000409285 VAMP4O75379 141 aa26.42■■□□□ 1.82
VSX1-203ENST00000409285 BAG6P46379 1132 aa26.42■■□□□ 1.82
VSX1-203ENST00000409285 SLC4A9Q96Q91 983 aa26.42■■□□□ 1.82
VSX1-203ENST00000409285 TEX13AQ9BXU3 409 aaPredicted RBP26.41■■□□□ 1.82
VSX1-203ENST00000409285 C4BP0C0L5 1744 aa26.41■■□□□ 1.82
VSX1-203ENST00000409285 RBM42Q9BTD8 480 aaKnown RBP26.4■■□□□ 1.82
VSX1-203ENST00000409285 DEFB132Q7Z7B7 95 aa26.39■■□□□ 1.82
VSX1-203ENST00000409285 NUP188Q5SRE5 1749 aa26.39■■□□□ 1.81
VSX1-203ENST00000409285 APBA3O96018 575 aa26.38■■□□□ 1.81
VSX1-203ENST00000409285 SLC27A3Q5K4L6 730 aa26.37■■□□□ 1.81
VSX1-203ENST00000409285 PRAMEF22A3QJZ6 481 aa26.36■■□□□ 1.81
VSX1-203ENST00000409285 ELL2O00472 640 aaPredicted RBP26.36■■□□□ 1.81
VSX1-203ENST00000409285 UBR3Q6ZT12 1888 aa26.36■■□□□ 1.81
VSX1-203ENST00000409285 ERBB4Q15303 1308 aa26.36■■□□□ 1.81
VSX1-203ENST00000409285 HMGB2P26583 209 aaKnown RBP26.36■■□□□ 1.81
VSX1-203ENST00000409285 ATP6V1AP38606 617 aa26.36■■□□□ 1.81
VSX1-203ENST00000409285 ALDH1L2Q3SY69 923 aa26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms