RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 HMGB2P26583 209 aaKnown RBP26.14■■□□□ 1.78
SMARCB1-204ENST00000407422 ITPK1Q13572 414 aa26.14■■□□□ 1.78
SMARCB1-204ENST00000407422 AK7Q96M32 723 aa26.14■■□□□ 1.78
SMARCB1-204ENST00000407422 HMOX1P09601 288 aa26.14■■□□□ 1.77
SMARCB1-204ENST00000407422 C1orf141Q5JVX7 400 aa26.14■■□□□ 1.77
SMARCB1-204ENST00000407422 MSL1Q68DK7 614 aa26.14■■□□□ 1.77
SMARCB1-204ENST00000407422 MAP3K5Q99683 1374 aa26.13■■□□□ 1.77
SMARCB1-204ENST00000407422 ATP6V1AP38606 617 aa26.13■■□□□ 1.77
SMARCB1-204ENST00000407422 KLHL34Q8N239 644 aa26.12■■□□□ 1.77
SMARCB1-204ENST00000407422 DIAPH1O60610 1272 aaKnown RBP26.11■■□□□ 1.77
SMARCB1-204ENST00000407422 CABP4P57796 275 aa26.11■■□□□ 1.77
SMARCB1-204ENST00000407422 FLAD1Q8NFF5 587 aa26.11■■□□□ 1.77
SMARCB1-204ENST00000407422 PHF14O94880 888 aa26.1■■□□□ 1.77
SMARCB1-204ENST00000407422 SLC4A9Q96Q91 983 aa26.1■■□□□ 1.77
SMARCB1-204ENST00000407422 SCN11AQ9UI33 1791 aa26.09■■□□□ 1.77
SMARCB1-204ENST00000407422 COL3A1P02461 1466 aaPredicted RBP26.08■■□□□ 1.77
SMARCB1-204ENST00000407422 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.08■■□□□ 1.77
SMARCB1-204ENST00000407422 RBM42Q9BTD8 480 aaKnown RBP26.08■■□□□ 1.77
SMARCB1-204ENST00000407422 YY1P25490 414 aa26.07■■□□□ 1.76
SMARCB1-204ENST00000407422 NFATC2IPQ8NCF5 419 aa26.07■■□□□ 1.76
SMARCB1-204ENST00000407422 VIRMAQ69YN4 1812 aaKnown RBP26.06■■□□□ 1.76
SMARCB1-204ENST00000407422 GNPATO15228 680 aa26.06■■□□□ 1.76
SMARCB1-204ENST00000407422 ZNF831Q5JPB2 1677 aa26.05■■□□□ 1.76
SMARCB1-204ENST00000407422 SSFA2P28290 1259 aa26.05■■□□□ 1.76
SMARCB1-204ENST00000407422 AKAP4Q5JQC9 854 aa26.05■■□□□ 1.76
SMARCB1-204ENST00000407422 NLGN2Q8NFZ4 835 aa26.04■■□□□ 1.76
SMARCB1-204ENST00000407422 COL5A3P25940 1745 aaPredicted RBP26.04■■□□□ 1.76
SMARCB1-204ENST00000407422 LGR6Q9HBX8 967 aa26.03■■□□□ 1.76
SMARCB1-204ENST00000407422 MTHFSDQ2M296 383 aaKnown RBP26.03■■□□□ 1.76
SMARCB1-204ENST00000407422 U2SURPO15042 1029 aaKnown RBP26.02■■□□□ 1.76
SMARCB1-204ENST00000407422 PTCD1O75127 700 aaKnown RBP26.02■■□□□ 1.76
SMARCB1-204ENST00000407422 MYH14Q7Z406 1995 aaKnown RBP26■■□□□ 1.75
SMARCB1-204ENST00000407422 RNMTO43148 476 aaKnown RBP25.98■■□□□ 1.75
SMARCB1-204ENST00000407422 SLC52A2Q9HAB3 445 aa25.98■■□□□ 1.75
SMARCB1-204ENST00000407422 GPR162Q16538 588 aa25.97■■□□□ 1.75
SMARCB1-204ENST00000407422 CHD4Q14839 1912 aa25.97■■□□□ 1.75
SMARCB1-204ENST00000407422 RC3H1Q5TC82 1133 aaKnown RBP25.96■■□□□ 1.75
SMARCB1-204ENST00000407422 RTCBQ9Y3I0 505 aaKnown RBP25.96■■□□□ 1.75
SMARCB1-204ENST00000407422 ADAMTS7Q9UKP4 1686 aa25.96■■□□□ 1.75
SMARCB1-204ENST00000407422 CNTNAP4Q9C0A0 1308 aa25.96■■□□□ 1.75
SMARCB1-204ENST00000407422 MRC1P22897 1456 aa25.96■■□□□ 1.75
SMARCB1-204ENST00000407422 PELP1Q8IZL8 1130 aaKnown RBP25.96■■□□□ 1.75
SMARCB1-204ENST00000407422 TJP1Q07157 1748 aa25.95■■□□□ 1.75
SMARCB1-204ENST00000407422 PPP2R1AP30153 589 aa25.95■■□□□ 1.74
SMARCB1-204ENST00000407422 TRAPPC3LQ5T215 181 aa25.94■■□□□ 1.74
SMARCB1-204ENST00000407422 CFAP53Q96M91 514 aa25.93■■□□□ 1.74
SMARCB1-204ENST00000407422 SLC39A6Q13433 755 aa25.92■■□□□ 1.74
SMARCB1-204ENST00000407422 ARHGEF1Q92888 912 aaKnown RBP25.92■■□□□ 1.74
SMARCB1-204ENST00000407422 CD2APQ9Y5K6 639 aa25.92■■□□□ 1.74
SMARCB1-204ENST00000407422 RPS6KA4O75676 772 aa25.92■■□□□ 1.74
SMARCB1-204ENST00000407422 CICQ96RK0 1608 aaPredicted RBP25.91■■□□□ 1.74
SMARCB1-204ENST00000407422 CRKLP46109 303 aaKnown RBP25.91■■□□□ 1.74
SMARCB1-204ENST00000407422 C4AP0C0L4 1744 aa25.9■■□□□ 1.74
SMARCB1-204ENST00000407422 YBX3P16989 372 aaKnown RBP eCLIP25.89■■□□□ 1.743e-8■■■■□ 19.5
SMARCB1-204ENST00000407422 ADRA2BP18089 450 aa25.88■■□□□ 1.73
SMARCB1-204ENST00000407422 PHACTR3Q96KR7 559 aa25.88■■□□□ 1.73
SMARCB1-204ENST00000407422 MMP10P09238 476 aa25.88■■□□□ 1.73
SMARCB1-204ENST00000407422 PRKAR2BP31323 418 aa25.88■■□□□ 1.73
SMARCB1-204ENST00000407422 DNAJC10Q8IXB1 793 aa25.88■■□□□ 1.73
SMARCB1-204ENST00000407422 GAS2L2Q8NHY3 880 aa25.88■■□□□ 1.73
SMARCB1-204ENST00000407422 RSPH6AQ9H0K4 717 aa25.88■■□□□ 1.73
SMARCB1-204ENST00000407422 KCPQ6ZWJ8 1503 aa25.87■■□□□ 1.73
SMARCB1-204ENST00000407422 RFC4P35249 363 aa25.87■■□□□ 1.73
SMARCB1-204ENST00000407422 IL17REQ8NFR9 667 aa25.87■■□□□ 1.73
SMARCB1-204ENST00000407422 GNAT3A8MTJ3 354 aa25.86■■□□□ 1.73
SMARCB1-204ENST00000407422 INTS5Q6P9B9 1019 aaKnown RBP25.86■■□□□ 1.73
SMARCB1-204ENST00000407422 GYS1P13807 737 aa25.85■■□□□ 1.73
SMARCB1-204ENST00000407422 NUDCQ9Y266 331 aa25.85■■□□□ 1.73
SMARCB1-204ENST00000407422 UBR2Q8IWV8 1755 aa25.85■■□□□ 1.73
SMARCB1-204ENST00000407422 U2AF1L5P0DN76 240 aaPredicted RBP25.85■■□□□ 1.73
SMARCB1-204ENST00000407422 U2AF1Q01081 240 aaKnown RBP eCLIP25.85■■□□□ 1.73
SMARCB1-204ENST00000407422 NLGN1Q8N2Q7 840 aa25.85■■□□□ 1.73
SMARCB1-204ENST00000407422 SIPA1L3O60292 1781 aaPredicted RBP25.84■■□□□ 1.73
SMARCB1-204ENST00000407422 SRP68Q9UHB9 627 aaKnown RBP25.82■■□□□ 1.72
SMARCB1-204ENST00000407422 CYP19A1P11511 503 aaPredicted RBP25.81■■□□□ 1.72
SMARCB1-204ENST00000407422 ZNF784Q8NCA9 323 aaPredicted RBP25.81■■□□□ 1.72
SMARCB1-204ENST00000407422 CCDC87Q9NVE4 849 aa25.81■■□□□ 1.72
SMARCB1-204ENST00000407422 TEFQ10587 303 aa25.81■■□□□ 1.72
SMARCB1-204ENST00000407422 WWC3Q9ULE0 1092 aa25.81■■□□□ 1.72
SMARCB1-204ENST00000407422 KIF13BQ9NQT8 1826 aa25.8■■□□□ 1.72
SMARCB1-204ENST00000407422 USP42Q9H9J4 1324 aaKnown RBP25.78■■□□□ 1.72
SMARCB1-204ENST00000407422 GRIN3BO60391 1043 aa25.78■■□□□ 1.72
SMARCB1-204ENST00000407422 CEMIPQ8WUJ3 1361 aa25.78■■□□□ 1.72
SMARCB1-204ENST00000407422 FCHSD2O94868 740 aa25.77■■□□□ 1.72
SMARCB1-204ENST00000407422 TTC5Q8N0Z6 440 aa25.77■■□□□ 1.72
SMARCB1-204ENST00000407422 VSIG10Q8N0Z9 540 aa25.77■■□□□ 1.72
SMARCB1-204ENST00000407422 SOS1Q07889 1333 aaPredicted RBP25.77■■□□□ 1.72
SMARCB1-204ENST00000407422 FKBP8Q14318 412 aa25.77■■□□□ 1.72
SMARCB1-204ENST00000407422 ZNF790Q6PG37 636 aa25.77■■□□□ 1.72
SMARCB1-204ENST00000407422 ZNF496Q96IT1 587 aaPredicted RBP25.77■■□□□ 1.72
SMARCB1-204ENST00000407422 ZBTB1Q9Y2K1 713 aa25.77■■□□□ 1.72
SMARCB1-204ENST00000407422 N4BP2Q86UW6 1770 aaPredicted RBP25.76■■□□□ 1.71
SMARCB1-204ENST00000407422 KIAA1551Q9HCM1 1747 aa25.75■■□□□ 1.71
SMARCB1-204ENST00000407422 PARP3Q9Y6F1 533 aa25.74■■□□□ 1.71
SMARCB1-204ENST00000407422 C10orf71Q711Q0 1435 aa25.74■■□□□ 1.71
SMARCB1-204ENST00000407422 PXDNLA1KZ92 1463 aa25.73■■□□□ 1.71
SMARCB1-204ENST00000407422 KCNQ3O43525 872 aa25.72■■□□□ 1.71
SMARCB1-204ENST00000407422 DDR1Q08345 913 aa25.72■■□□□ 1.71
SMARCB1-204ENST00000407422 USPL1Q5W0Q7 1092 aa25.72■■□□□ 1.71
SMARCB1-204ENST00000407422 MCM10Q7L590 875 aa25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms