RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 GLYCTKQ8IVS8 523 aa7.84□□□□□ -1.15
HMGB3P18-201ENST00000406327 COL26A1Q96A83 441 aa7.84□□□□□ -1.15
HMGB3P18-201ENST00000406327 PRIMPOLQ96LW4 560 aa7.84□□□□□ -1.15
HMGB3P18-201ENST00000406327 RBM47A0AV96 593 aaKnown RBP7.83□□□□□ -1.16
HMGB3P18-201ENST00000406327 ERVH48-1M5A8F1 160 aa7.83□□□□□ -1.16
HMGB3P18-201ENST00000406327 WASLO00401 505 aaPredicted RBP7.83□□□□□ -1.16
HMGB3P18-201ENST00000406327 FOXO3O43524 673 aa7.83□□□□□ -1.16
HMGB3P18-201ENST00000406327 WEE1P30291 646 aa7.83□□□□□ -1.16
HMGB3P18-201ENST00000406327 MPNDQ8N594 471 aa7.83□□□□□ -1.16
HMGB3P18-201ENST00000406327 BCL11AQ9H165 835 aa7.83□□□□□ -1.16
HMGB3P18-201ENST00000406327 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.83□□□□□ -1.16
HMGB3P18-201ENST00000406327 H3BRB1 525 aa7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 C21orf2O43822 256 aa7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 ICMTO60725 284 aa7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 IGFBP4P22692 258 aa7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 CYP2U1Q7Z449 544 aa7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 GAS2L2Q8NHY3 880 aa7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 CDK15Q96Q40 435 aa7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 TUT1Q9H6E5 874 aaKnown RBP7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 ZNF358Q9NW07 568 aa7.82□□□□□ -1.16
HMGB3P18-201ENST00000406327 FSHRP23945 695 aa7.81□□□□□ -1.16
HMGB3P18-201ENST00000406327 ARID5BQ14865 1188 aa7.81□□□□□ -1.16
HMGB3P18-201ENST00000406327 ESCO1Q5FWF5 840 aa7.81□□□□□ -1.16
HMGB3P18-201ENST00000406327 DNAJC14Q6Y2X3 702 aaPredicted RBP7.81□□□□□ -1.16
HMGB3P18-201ENST00000406327 TSEN2Q8NCE0 465 aaKnown RBP7.81□□□□□ -1.16
HMGB3P18-201ENST00000406327 VTI1AQ96AJ9 217 aa7.81□□□□□ -1.16
HMGB3P18-201ENST00000406327 ZNF428Q96B54 188 aa7.81□□□□□ -1.16
HMGB3P18-201ENST00000406327 LOC100996750A0A140TA64 210 aa7.8□□□□□ -1.16
HMGB3P18-201ENST00000406327 FAM181BA6NEQ2 426 aa7.8□□□□□ -1.16
HMGB3P18-201ENST00000406327 TERTO14746 1132 aaKnown RBP7.8□□□□□ -1.16
HMGB3P18-201ENST00000406327 GDF10P55107 478 aa7.8□□□□□ -1.16
HMGB3P18-201ENST00000406327 SKOR1P84550 965 aa7.8□□□□□ -1.16
HMGB3P18-201ENST00000406327 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.8□□□□□ -1.16
HMGB3P18-201ENST00000406327 KRTAP4-6Q9BYQ5 205 aa7.8□□□□□ -1.16
HMGB3P18-201ENST00000406327 SCTRP47872 440 aa7.79□□□□□ -1.16
HMGB3P18-201ENST00000406327 FKBP4Q02790 459 aaKnown RBP eCLIP7.79□□□□□ -1.16
HMGB3P18-201ENST00000406327 NR5A1Q13285 461 aa7.79□□□□□ -1.16
HMGB3P18-201ENST00000406327 ZNF211Q13398 564 aaPredicted RBP7.79□□□□□ -1.16
HMGB3P18-201ENST00000406327 RC3H1Q5TC82 1133 aaKnown RBP7.79□□□□□ -1.16
HMGB3P18-201ENST00000406327 CCDC116Q8IYX3 515 aa7.79□□□□□ -1.16
HMGB3P18-201ENST00000406327 GTF3C2Q8WUA4 911 aaPredicted RBP7.79□□□□□ -1.16
HMGB3P18-201ENST00000406327 ADH1CP00326 375 aa7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 GNRH1P01148 92 aa7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 FKBP5Q13451 457 aaPredicted RBP7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 LCE2CQ5TA81 110 aa7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 ZSCAN29Q8IWY8 852 aaPredicted RBP7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 MKNK1Q9BUB5 465 aa7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 BCL2L13Q9BXK5 485 aa7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 OSBPL3Q9H4L5 887 aa7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 PGPEP1Q9NXJ5 209 aa7.78□□□□□ -1.16
HMGB3P18-201ENST00000406327 TTC24A2A3L6 582 aaPredicted RBP7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 TMEM229AB2RXF0 380 aa7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 INHAP05111 366 aa7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 ZNF326Q5BKZ1 582 aaKnown RBP7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 HELQQ8TDG4 1101 aa7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 SENP2Q9HC62 589 aa7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 ATP13A2Q9NQ11 1180 aa7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 CYLDQ9NQC7 956 aa7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 DCTN4Q9UJW0 460 aa7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 CHMP3Q9Y3E7 222 aa7.77□□□□□ -1.17
HMGB3P18-201ENST00000406327 FAM13AO94988 1023 aa7.76□□□□□ -1.17
HMGB3P18-201ENST00000406327 SNRPBP14678 240 aaKnown RBP7.76□□□□□ -1.17
HMGB3P18-201ENST00000406327 MAPK1P28482 360 aa7.76□□□□□ -1.17
HMGB3P18-201ENST00000406327 SCNN1AP37088 669 aa7.76□□□□□ -1.17
HMGB3P18-201ENST00000406327 SCNN1DP51172 638 aa7.76□□□□□ -1.17
HMGB3P18-201ENST00000406327 ZNF784Q8NCA9 323 aaPredicted RBP7.76□□□□□ -1.17
HMGB3P18-201ENST00000406327 SCG3Q8WXD2 468 aaKnown RBP7.76□□□□□ -1.17
HMGB3P18-201ENST00000406327 EMILIN1Q9Y6C2 1016 aa7.76□□□□□ -1.17
HMGB3P18-201ENST00000406327 ANKRD33BA6NCL7 494 aa7.75□□□□□ -1.17
HMGB3P18-201ENST00000406327 COL19A1Q14993 1142 aa7.75□□□□□ -1.17
HMGB3P18-201ENST00000406327 STAG2Q8N3U4 1231 aa7.75□□□□□ -1.17
HMGB3P18-201ENST00000406327 TRIM47Q96LD4 638 aa7.75□□□□□ -1.17
HMGB3P18-201ENST00000406327 SLC4A9Q96Q91 983 aa7.75□□□□□ -1.17
HMGB3P18-201ENST00000406327 SEPT3Q9UH03 358 aa7.75□□□□□ -1.17
HMGB3P18-201ENST00000406327 DNMT3AQ9Y6K1 912 aaPredicted RBP7.75□□□□□ -1.17
HMGB3P18-201ENST00000406327 ATAD2Q6PL18 1390 aa7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 WNT7AO00755 349 aa7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 GRM5P41594 1212 aa7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 PPP1R26Q5T8A7 1209 aaPredicted RBP7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 NBPF15Q8N660 670 aa7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 ASB16Q96NS5 453 aa7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 ANO2Q9NQ90 1003 aa7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 TMPRSS4Q9NRS4 437 aa7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 TLL2Q9Y6L7 1015 aa7.74□□□□□ -1.17
HMGB3P18-201ENST00000406327 PPP1R12BO60237 982 aaPredicted RBP7.73□□□□□ -1.17
HMGB3P18-201ENST00000406327 NPAS4Q8IUM7 802 aa7.73□□□□□ -1.17
HMGB3P18-201ENST00000406327 TNS4Q8IZW8 715 aa7.73□□□□□ -1.17
HMGB3P18-201ENST00000406327 ETNK1Q9HBU6 452 aa7.73□□□□□ -1.17
HMGB3P18-201ENST00000406327 NDUFB5O43674 189 aa7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 LGR5O75473 907 aa7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 ZNF16P17020 682 aaPredicted RBP7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 NPR3P17342 541 aa7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 EPHA4P54764 986 aa7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 PSMA6P60900 246 aaKnown RBP7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 ALKBH2Q6NS38 261 aa7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 C16orf46Q6P387 395 aa7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 SNIP1Q8TAD8 396 aaKnown RBP7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 GIPC2Q8TF65 315 aa7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 KIFC2Q96AC6 838 aa7.72□□□□□ -1.17
HMGB3P18-201ENST00000406327 TSPAN10Q9H1Z9 355 aaPredicted RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms