RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 USP31Q70CQ4 1352 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 NPC1L1Q9UHC9 1359 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 NHSQ6T4R5 1651 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 G3V3G9 751 aa12.63□□□□□ -0.39
VPS53-203ENST00000401468 DDB1Q16531 1140 aa12.63□□□□□ -0.39
VPS53-203ENST00000401468 KCNH5Q8NCM2 988 aa12.63□□□□□ -0.39
VPS53-203ENST00000401468 POLR3GLQ9BT43 218 aa12.63□□□□□ -0.39
VPS53-203ENST00000401468 NLRP2Q9NX02 1062 aa12.63□□□□□ -0.39
VPS53-203ENST00000401468 OVOS2A0A0G2JMS6 1433 aa12.62□□□□□ -0.39
VPS53-203ENST00000401468 EFCAB3Q8N7B9 438 aa12.62□□□□□ -0.39
VPS53-203ENST00000401468 PANK3Q9H999 370 aa12.62□□□□□ -0.39
VPS53-203ENST00000401468 DISP2A7MBM2 1401 aa12.62□□□□□ -0.39
VPS53-203ENST00000401468 CEP350Q5VT06 3117 aa12.62□□□□□ -0.39
VPS53-203ENST00000401468 NSD2O96028 1365 aa12.61□□□□□ -0.39
VPS53-203ENST00000401468 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.61□□□□□ -0.39
VPS53-203ENST00000401468 ACSBG1Q96GR2 724 aa12.61□□□□□ -0.39
VPS53-203ENST00000401468 ZFP91Q96JP5 570 aaPredicted RBP12.61□□□□□ -0.39
VPS53-203ENST00000401468 THRAP3Q9Y2W1 955 aaKnown RBP12.61□□□□□ -0.39
VPS53-203ENST00000401468 CASZ1Q86V15 1759 aa12.61□□□□□ -0.39
VPS53-203ENST00000401468 ITGB4P16144 1822 aa12.6□□□□□ -0.39
VPS53-203ENST00000401468 AMER1Q5JTC6 1135 aaPredicted RBP12.6□□□□□ -0.39
VPS53-203ENST00000401468 ANKRD24Q8TF21 1146 aa12.6□□□□□ -0.39
VPS53-203ENST00000401468 GGNBP2Q9H3C7 697 aa12.6□□□□□ -0.39
VPS53-203ENST00000401468 ABCC6O95255 1503 aa12.59□□□□□ -0.39
VPS53-203ENST00000401468 KCNQ2O43526 872 aa12.59□□□□□ -0.39
VPS53-203ENST00000401468 ST18O60284 1047 aa12.59□□□□□ -0.39
VPS53-203ENST00000401468 RRS1Q15050 365 aaKnown RBP12.59□□□□□ -0.39
VPS53-203ENST00000401468 CARD10Q9BWT7 1032 aa12.59□□□□□ -0.39
VPS53-203ENST00000401468 ERBB3P21860 1342 aa12.59□□□□□ -0.39
VPS53-203ENST00000401468 SNPHO15079 494 aa12.58□□□□□ -0.4
VPS53-203ENST00000401468 FYB1O15117 783 aa12.58□□□□□ -0.4
VPS53-203ENST00000401468 TNS2Q63HR2 1409 aa12.58□□□□□ -0.4
VPS53-203ENST00000401468 USHBP1Q8N6Y0 703 aa12.58□□□□□ -0.4
VPS53-203ENST00000401468 PDGFDQ9GZP0 370 aaPredicted RBP12.58□□□□□ -0.4
VPS53-203ENST00000401468 BOLA1Q9Y3E2 137 aa12.58□□□□□ -0.4
VPS53-203ENST00000401468 ANO8Q9HCE9 1232 aaPredicted RBP12.57□□□□□ -0.4
VPS53-203ENST00000401468 PCDH10Q9P2E7 1040 aa12.57□□□□□ -0.4
VPS53-203ENST00000401468 VIRMAQ69YN4 1812 aaKnown RBP12.57□□□□□ -0.4
VPS53-203ENST00000401468 CGNL1Q0VF96 1302 aa12.57□□□□□ -0.4
VPS53-203ENST00000401468 MAP3K19Q56UN5 1328 aa12.57□□□□□ -0.4
VPS53-203ENST00000401468 DDX10Q13206 875 aaKnown RBP12.56□□□□□ -0.4
VPS53-203ENST00000401468 COG3Q96JB2 828 aa12.56□□□□□ -0.4
VPS53-203ENST00000401468 TOGARAM1Q9Y4F4 1720 aa12.55□□□□□ -0.4
VPS53-203ENST00000401468 EXOC5O00471 708 aa12.55□□□□□ -0.4
VPS53-203ENST00000401468 AMPHP49418 695 aa12.55□□□□□ -0.4
VPS53-203ENST00000401468 KNSTRNQ9Y448 316 aa12.55□□□□□ -0.4
VPS53-203ENST00000401468 MEGF6O75095 1541 aa12.54□□□□□ -0.4
VPS53-203ENST00000401468 TAF1LQ8IZX4 1826 aa12.54□□□□□ -0.4
VPS53-203ENST00000401468 ECM2O94769 699 aaPredicted RBP12.54□□□□□ -0.4
VPS53-203ENST00000401468 HOXC9P31274 260 aa12.54□□□□□ -0.4
VPS53-203ENST00000401468 KCNQ4P56696 695 aa12.54□□□□□ -0.4
VPS53-203ENST00000401468 DDX54Q8TDD1 881 aaKnown RBP12.54□□□□□ -0.4
VPS53-203ENST00000401468 TAOK2Q9UL54 1235 aa12.54□□□□□ -0.4
VPS53-203ENST00000401468 LY75O60449 1722 aa12.54□□□□□ -0.4
VPS53-203ENST00000401468 SMG6Q86US8 1419 aaKnown RBP12.54□□□□□ -0.4
VPS53-203ENST00000401468 IL2RBP14784 551 aa12.53□□□□□ -0.4
VPS53-203ENST00000401468 IP6K1Q92551 441 aa12.53□□□□□ -0.4
VPS53-203ENST00000401468 PARD3Q8TEW0 1356 aa12.53□□□□□ -0.4
VPS53-203ENST00000401468 C1QTNF8P60827 252 aa12.52□□□□□ -0.41
VPS53-203ENST00000401468 ZNF784Q8NCA9 323 aaPredicted RBP12.52□□□□□ -0.41
VPS53-203ENST00000401468 BCL11BQ9C0K0 894 aaPredicted RBP12.52□□□□□ -0.41
VPS53-203ENST00000401468 PAPPAQ13219 1627 aa12.51□□□□□ -0.41
VPS53-203ENST00000401468 PPM1GO15355 546 aaPredicted RBP12.51□□□□□ -0.41
VPS53-203ENST00000401468 TNNT2P45379 298 aaPredicted RBP12.51□□□□□ -0.41
VPS53-203ENST00000401468 UTRNP46939 3433 aa12.5□□□□□ -0.41
VPS53-203ENST00000401468 ZBTB7AO95365 584 aa12.5□□□□□ -0.41
VPS53-203ENST00000401468 HSP90AB2PQ58FF8 381 aa12.5□□□□□ -0.41
VPS53-203ENST00000401468 NBPF14Q5TI25 921 aa12.5□□□□□ -0.41
VPS53-203ENST00000401468 SYTL4Q96C24 671 aaPredicted RBP12.5□□□□□ -0.41
VPS53-203ENST00000401468 CDCA7Q9BWT1 371 aaPredicted RBP12.5□□□□□ -0.41
VPS53-203ENST00000401468 EMILIN1Q9Y6C2 1016 aa12.5□□□□□ -0.41
VPS53-203ENST00000401468 KIF24Q5T7B8 1368 aa12.5□□□□□ -0.41
VPS53-203ENST00000401468 PKD1L3Q7Z443 1732 aa12.5□□□□□ -0.41
VPS53-203ENST00000401468 TXNRD1Q16881 649 aa12.49□□□□□ -0.41
VPS53-203ENST00000401468 NBPF6Q5VWK0 638 aa12.49□□□□□ -0.41
VPS53-203ENST00000401468 NBPF4Q96M43 638 aa12.49□□□□□ -0.41
VPS53-203ENST00000401468 C5P01031 1676 aa12.48□□□□□ -0.41
VPS53-203ENST00000401468 TMEM121BQ9BXQ6 578 aaPredicted RBP12.48□□□□□ -0.41
VPS53-203ENST00000401468 QSER1Q2KHR3 1735 aa12.48□□□□□ -0.41
VPS53-203ENST00000401468 RTL1A6NKG5 1358 aa12.47□□□□□ -0.41
VPS53-203ENST00000401468 STK24Q9Y6E0 443 aa12.47□□□□□ -0.41
VPS53-203ENST00000401468 INSRP06213 1382 aa12.46□□□□□ -0.41
VPS53-203ENST00000401468 PLSCR1O15162 318 aa12.46□□□□□ -0.41
VPS53-203ENST00000401468 RALBP1Q15311 655 aa12.46□□□□□ -0.41
VPS53-203ENST00000401468 PPP1R1BQ9UD71 204 aaPredicted RBP12.46□□□□□ -0.41
VPS53-203ENST00000401468 COL3A1P02461 1466 aaPredicted RBP12.46□□□□□ -0.42
VPS53-203ENST00000401468 ZNF827Q17R98 1081 aa12.45□□□□□ -0.42
VPS53-203ENST00000401468 CC2D1BQ5T0F9 858 aaKnown RBP12.45□□□□□ -0.42
VPS53-203ENST00000401468 MORC1Q86VD1 984 aa12.45□□□□□ -0.42
VPS53-203ENST00000401468 CDAN1Q8IWY9 1227 aa12.45□□□□□ -0.42
VPS53-203ENST00000401468 PRKRIP1Q9H875 184 aaPredicted RBP12.45□□□□□ -0.42
VPS53-203ENST00000401468 LRRC4BQ9NT99 713 aa12.45□□□□□ -0.42
VPS53-203ENST00000401468 BCL9O00512 1426 aa12.45□□□□□ -0.42
VPS53-203ENST00000401468 CHD4Q14839 1912 aa12.45□□□□□ -0.42
VPS53-203ENST00000401468 STK25O00506 426 aa12.44□□□□□ -0.42
VPS53-203ENST00000401468 PRIM1P49642 420 aaKnown RBP12.44□□□□□ -0.42
VPS53-203ENST00000401468 CNGB1Q14028 1251 aaPredicted RBP12.44□□□□□ -0.42
VPS53-203ENST00000401468 MARVELD3Q96A59 401 aa12.44□□□□□ -0.42
VPS53-203ENST00000401468 STK32BQ9NY57 414 aa12.44□□□□□ -0.42
VPS53-203ENST00000401468 POLKQ9UBT6 870 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms