RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 NGEFQ8N5V2 710 aa15.07■□□□□ 0
SKA3-203ENST00000400018 BCL9LQ86UU0 1499 aa15.06■□□□□ 0
SKA3-203ENST00000400018 UNC5CLQ8IV45 518 aa15.06■□□□□ 0
SKA3-203ENST00000400018 SPATA31A1Q5TZJ5 1347 aa15.06■□□□□ 0
SKA3-203ENST00000400018 PLCH1Q4KWH8 1693 aa15.05■□□□□ 0
SKA3-203ENST00000400018 NCAPD2Q15021 1401 aa15.05■□□□□ 0
SKA3-203ENST00000400018 F6X3S4 739 aa15.05■□□□□ -0
SKA3-203ENST00000400018 KCNQ2O43526 872 aa15.05■□□□□ -0
SKA3-203ENST00000400018 COL22A1Q8NFW1 1626 aaPredicted RBP15.04■□□□□ -0
SKA3-203ENST00000400018 RNF123Q5XPI4 1314 aa15.04■□□□□ -0
SKA3-203ENST00000400018 OVOS2A0A0G2JMS6 1433 aa15.04■□□□□ -0
SKA3-203ENST00000400018 CABP4P57796 275 aa15.04■□□□□ -0
SKA3-203ENST00000400018 IL16Q14005 1332 aa15.04■□□□□ -0
SKA3-203ENST00000400018 CEMIPQ8WUJ3 1361 aa15.04■□□□□ -0
SKA3-203ENST00000400018 PROSER3Q2NL68 480 aa15.03■□□□□ -0
SKA3-203ENST00000400018 PHAXQ9H814 394 aaKnown RBP15.03■□□□□ -0
SKA3-203ENST00000400018 SLC4A2P04920 1241 aa15.03■□□□□ -0
SKA3-203ENST00000400018 TRIM27P14373 513 aa15.03■□□□□ -0
SKA3-203ENST00000400018 MARCH10Q8NA82 808 aaPredicted RBP15.03■□□□□ -0
SKA3-203ENST00000400018 ZNF496Q96IT1 587 aaPredicted RBP15.03■□□□□ -0
SKA3-203ENST00000400018 ASAP1Q9ULH1 1129 aa15.03■□□□□ -0
SKA3-203ENST00000400018 SPATA31A5Q5VU36 1347 aa15.02■□□□□ -0
SKA3-203ENST00000400018 SPATA31A7Q8IWB4 1347 aa15.02■□□□□ -0
SKA3-203ENST00000400018 EXOC5O00471 708 aa15.02■□□□□ -0
SKA3-203ENST00000400018 SLC52A2Q9HAB3 445 aa15.02■□□□□ -0
SKA3-203ENST00000400018 COL14A1Q05707 1796 aaKnown RBP15.02■□□□□ -0
SKA3-203ENST00000400018 EIF4A1P60842 406 aaKnown RBP15.02□□□□□ -0.01
SKA3-203ENST00000400018 SMIM5Q71RC9 77 aa15.02□□□□□ -0.01
SKA3-203ENST00000400018 UTRNP46939 3433 aa15.02□□□□□ -0.01
SKA3-203ENST00000400018 PRIM1P49642 420 aaKnown RBP15.01□□□□□ -0.01
SKA3-203ENST00000400018 DDB1Q16531 1140 aa15.01□□□□□ -0.01
SKA3-203ENST00000400018 VIRMAQ69YN4 1812 aaKnown RBP15.01□□□□□ -0.01
SKA3-203ENST00000400018 USP16Q9Y5T5 823 aa15.01□□□□□ -0.01
SKA3-203ENST00000400018 SLIT2O94813 1529 aa15.01□□□□□ -0.01
SKA3-203ENST00000400018 CALD1Q05682 793 aaKnown RBP15.01□□□□□ -0.01
SKA3-203ENST00000400018 MRPL50Q8N5N7 158 aaKnown RBP15.01□□□□□ -0.01
SKA3-203ENST00000400018 C1orf115Q9H7X2 142 aa15.01□□□□□ -0.01
SKA3-203ENST00000400018 PCDH11XQ9BZA7 1347 aa15□□□□□ -0.01
SKA3-203ENST00000400018 PCDH11YQ9BZA8 1340 aa15□□□□□ -0.01
SKA3-203ENST00000400018 MYL6BP14649 208 aa15□□□□□ -0.01
SKA3-203ENST00000400018 ZNF330Q9Y3S2 320 aaPredicted RBP15□□□□□ -0.01
SKA3-203ENST00000400018 AIMP1Q12904 312 aaKnown RBP15□□□□□ -0.01
SKA3-203ENST00000400018 ZNF790Q6PG37 636 aa15□□□□□ -0.01
SKA3-203ENST00000400018 PIGBQ92521 554 aa15□□□□□ -0.01
SKA3-203ENST00000400018 CHPF2Q9P2E5 772 aa15□□□□□ -0.01
SKA3-203ENST00000400018 SLC4A10Q6U841 1118 aa14.99□□□□□ -0.01
SKA3-203ENST00000400018 TMEM57Q8N5G2 664 aa14.99□□□□□ -0.01
SKA3-203ENST00000400018 DCAF5Q96JK2 942 aa14.99□□□□□ -0.01
SKA3-203ENST00000400018 QTRT2Q9H974 415 aaKnown RBP14.99□□□□□ -0.01
SKA3-203ENST00000400018 HDGFL1Q5TGJ6 251 aa14.99□□□□□ -0.01
SKA3-203ENST00000400018 FNBP4Q8N3X1 1017 aaPredicted RBP14.99□□□□□ -0.01
SKA3-203ENST00000400018 RBM42Q9BTD8 480 aaKnown RBP14.98□□□□□ -0.01
SKA3-203ENST00000400018 ITPRIPQ8IWB1 547 aa14.98□□□□□ -0.01
SKA3-203ENST00000400018 HTATSF1O43719 755 aaKnown RBP14.97□□□□□ -0.01
SKA3-203ENST00000400018 SPATA31A6Q5VVP1 1343 aa14.97□□□□□ -0.01
SKA3-203ENST00000400018 FTSJ3Q8IY81 847 aaKnown RBP14.97□□□□□ -0.01
SKA3-203ENST00000400018 NRAPQ86VF7 1730 aa14.97□□□□□ -0.01
SKA3-203ENST00000400018 SHANK3Q9BYB0 1731 aa14.97□□□□□ -0.01
SKA3-203ENST00000400018 DISP2A7MBM2 1401 aa14.96□□□□□ -0.01
SKA3-203ENST00000400018 GIGYF1O75420 1035 aaPredicted RBP14.95□□□□□ -0.02
SKA3-203ENST00000400018 ZKSCAN2Q63HK3 967 aa14.95□□□□□ -0.02
SKA3-203ENST00000400018 FBXO41Q8TF61 875 aa14.95□□□□□ -0.02
SKA3-203ENST00000400018 GJD4Q96KN9 370 aaPredicted RBP14.95□□□□□ -0.02
SKA3-203ENST00000400018 ARXQ96QS3 562 aa14.95□□□□□ -0.02
SKA3-203ENST00000400018 ANO8Q9HCE9 1232 aaPredicted RBP14.95□□□□□ -0.02
SKA3-203ENST00000400018 VPS72Q15906 364 aa14.95□□□□□ -0.02
SKA3-203ENST00000400018 ATF7IPQ6VMQ6 1270 aa14.95□□□□□ -0.02
SKA3-203ENST00000400018 TTC5Q8N0Z6 440 aa14.95□□□□□ -0.02
SKA3-203ENST00000400018 CCDC136Q96JN2 1154 aa14.95□□□□□ -0.02
SKA3-203ENST00000400018 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.95□□□□□ -0.02
SKA3-203ENST00000400018 TMOD3Q9NYL9 352 aa14.95□□□□□ -0.02
SKA3-203ENST00000400018 A1BGP04217 495 aa14.94□□□□□ -0.02
SKA3-203ENST00000400018 NCBP3Q53F19 620 aaKnown RBP14.94□□□□□ -0.02
SKA3-203ENST00000400018 LRRC37A3O60309 1634 aa14.94□□□□□ -0.02
SKA3-203ENST00000400018 DZIP1LQ8IYY4 767 aaKnown RBP14.94□□□□□ -0.02
SKA3-203ENST00000400018 JARID2Q92833 1246 aaPredicted RBP14.94□□□□□ -0.02
SKA3-203ENST00000400018 SLC4A9Q96Q91 983 aa14.94□□□□□ -0.02
SKA3-203ENST00000400018 TOGARAM1Q9Y4F4 1720 aa14.93□□□□□ -0.02
SKA3-203ENST00000400018 FKBP5Q13451 457 aaPredicted RBP14.93□□□□□ -0.02
SKA3-203ENST00000400018 SEPT12Q8IYM1 358 aa14.93□□□□□ -0.02
SKA3-203ENST00000400018 PKD1L3Q7Z443 1732 aa14.93□□□□□ -0.02
SKA3-203ENST00000400018 ATG3Q9NT62 314 aa14.93□□□□□ -0.02
SKA3-203ENST00000400018 SCN11AQ9UI33 1791 aa14.92□□□□□ -0.02
SKA3-203ENST00000400018 PARP4Q9UKK3 1724 aaKnown RBP14.92□□□□□ -0.02
SKA3-203ENST00000400018 ABCC6O95255 1503 aa14.91□□□□□ -0.02
SKA3-203ENST00000400018 DNAJC10Q8IXB1 793 aa14.91□□□□□ -0.02
SKA3-203ENST00000400018 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.91□□□□□ -0.02
SKA3-203ENST00000400018 PCDHB15Q9Y5E8 787 aa14.91□□□□□ -0.02
SKA3-203ENST00000400018 FLIIQ13045 1269 aa14.91□□□□□ -0.02
SKA3-203ENST00000400018 PPP4R2Q9NY27 417 aa14.91□□□□□ -0.02
SKA3-203ENST00000400018 IGHDP01880 384 aa14.9□□□□□ -0.02
SKA3-203ENST00000400018 STK31Q9BXU1 1019 aa14.9□□□□□ -0.02
SKA3-203ENST00000400018 RGS17Q9UGC6 210 aaPredicted RBP14.9□□□□□ -0.02
SKA3-203ENST00000400018 RTL5Q5HYW3 569 aaPredicted RBP14.9□□□□□ -0.02
SKA3-203ENST00000400018 NKX1-1Q15270 411 aaPredicted RBP14.89□□□□□ -0.03
SKA3-203ENST00000400018 GLI3P10071 1580 aa14.89□□□□□ -0.03
SKA3-203ENST00000400018 PDIA6Q15084 440 aa14.89□□□□□ -0.03
SKA3-203ENST00000400018 ALDH1L2Q3SY69 923 aa14.89□□□□□ -0.03
SKA3-203ENST00000400018 HSP90AB1P08238 724 aaKnown RBP14.88□□□□□ -0.03
SKA3-203ENST00000400018 CCDC30Q5VVM6 783 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms