RNA–Protein interactions for RNA: ENST00000399973.1

USP16-202, Transcript of ubiquitin specific peptidase 16, humanhuman

TSL 3

Gene USP16, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-202ENST00000399973 SIPA1L3O60292 1781 aaPredicted RBP11.3□□□□□ -0.6
USP16-202ENST00000399973 MRC1P22897 1456 aa11.3□□□□□ -0.6
USP16-202ENST00000399973 PNPLA7Q6ZV29 1317 aa11.3□□□□□ -0.6
USP16-202ENST00000399973 DLG5Q8TDM6 1919 aa11.29□□□□□ -0.6
USP16-202ENST00000399973 DDX10Q13206 875 aaKnown RBP11.29□□□□□ -0.6
USP16-202ENST00000399973 ASAP1Q9ULH1 1129 aa11.29□□□□□ -0.6
USP16-202ENST00000399973 C4AP0C0L4 1744 aa11.29□□□□□ -0.6
USP16-202ENST00000399973 UBR2Q8IWV8 1755 aa11.28□□□□□ -0.6
USP16-202ENST00000399973 CICQ96RK0 1608 aaPredicted RBP11.28□□□□□ -0.6
USP16-202ENST00000399973 ERVV-2B6SEH9 535 aa11.28□□□□□ -0.6
USP16-202ENST00000399973 ZEB1P37275 1124 aaPredicted RBP11.28□□□□□ -0.6
USP16-202ENST00000399973 AKAP4Q5JQC9 854 aa11.28□□□□□ -0.6
USP16-202ENST00000399973 AK7Q96M32 723 aa11.28□□□□□ -0.6
USP16-202ENST00000399973 RBM42Q9BTD8 480 aaKnown RBP11.28□□□□□ -0.6
USP16-202ENST00000399973 MTFR1LQ9H019 292 aa11.28□□□□□ -0.6
USP16-202ENST00000399973 NUDCQ9Y266 331 aa11.28□□□□□ -0.6
USP16-202ENST00000399973 LOC102724428A0A0B4J2F2 783 aa11.27□□□□□ -0.61
USP16-202ENST00000399973 PHF14O94880 888 aa11.27□□□□□ -0.61
USP16-202ENST00000399973 U2AF1L5P0DN76 240 aaPredicted RBP11.27□□□□□ -0.61
USP16-202ENST00000399973 PRKAR2BP31323 418 aa11.27□□□□□ -0.61
USP16-202ENST00000399973 SIK1P57059 783 aa11.27□□□□□ -0.61
USP16-202ENST00000399973 U2AF1Q01081 240 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP16-202ENST00000399973 MTHFSDQ2M296 383 aaKnown RBP11.27□□□□□ -0.61
USP16-202ENST00000399973 ATG3Q9NT62 314 aa11.27□□□□□ -0.61
USP16-202ENST00000399973 MAP3K5Q99683 1374 aa11.27□□□□□ -0.61
USP16-202ENST00000399973 ATP6V1AP38606 617 aa11.26□□□□□ -0.61
USP16-202ENST00000399973 KLHL34Q8N239 644 aa11.26□□□□□ -0.61
USP16-202ENST00000399973 RNF216Q9NWF9 866 aaPredicted RBP11.26□□□□□ -0.61
USP16-202ENST00000399973 PTGER2P43116 358 aa11.25□□□□□ -0.61
USP16-202ENST00000399973 ITPK1Q13572 414 aa11.25□□□□□ -0.61
USP16-202ENST00000399973 NCBP3Q53F19 620 aaKnown RBP11.25□□□□□ -0.61
USP16-202ENST00000399973 MSL1Q68DK7 614 aa11.25□□□□□ -0.61
USP16-202ENST00000399973 NFATC2IPQ8NCF5 419 aa11.25□□□□□ -0.61
USP16-202ENST00000399973 LINC00116Q8NCU8 138 aa11.25□□□□□ -0.61
USP16-202ENST00000399973 MYH14Q7Z406 1995 aaKnown RBP11.25□□□□□ -0.61
USP16-202ENST00000399973 KCPQ6ZWJ8 1503 aa11.25□□□□□ -0.61
USP16-202ENST00000399973 GNPATO15228 680 aa11.24□□□□□ -0.61
USP16-202ENST00000399973 RNMTO43148 476 aaKnown RBP11.24□□□□□ -0.61
USP16-202ENST00000399973 PTCD1O75127 700 aaKnown RBP11.24□□□□□ -0.61
USP16-202ENST00000399973 COL23A1Q86Y22 540 aaPredicted RBP11.24□□□□□ -0.61
USP16-202ENST00000399973 GAS2L2Q8NHY3 880 aa11.24□□□□□ -0.61
USP16-202ENST00000399973 RSPH6AQ9H0K4 717 aa11.24□□□□□ -0.61
USP16-202ENST00000399973 DCAF8L1A6NGE4 600 aa11.23□□□□□ -0.61
USP16-202ENST00000399973 HMGB2P26583 209 aaKnown RBP11.23□□□□□ -0.61
USP16-202ENST00000399973 POLD1P28340 1107 aa11.23□□□□□ -0.61
USP16-202ENST00000399973 SMIM5Q71RC9 77 aa11.23□□□□□ -0.61
USP16-202ENST00000399973 SLC52A2Q9HAB3 445 aa11.23□□□□□ -0.61
USP16-202ENST00000399973 LGR6Q9HBX8 967 aa11.23□□□□□ -0.61
USP16-202ENST00000399973 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.22□□□□□ -0.61
USP16-202ENST00000399973 GNAT3A8MTJ3 354 aa11.22□□□□□ -0.61
USP16-202ENST00000399973 TEFQ10587 303 aa11.22□□□□□ -0.61
USP16-202ENST00000399973 FLAD1Q8NFF5 587 aa11.22□□□□□ -0.61
USP16-202ENST00000399973 SLC16A10Q8TF71 515 aa11.22□□□□□ -0.61
USP16-202ENST00000399973 PHACTR3Q96KR7 559 aa11.22□□□□□ -0.61
USP16-202ENST00000399973 ARXQ96QS3 562 aa11.22□□□□□ -0.61
USP16-202ENST00000399973 MYBBP1AQ9BQG0 1328 aaKnown RBP11.21□□□□□ -0.61
USP16-202ENST00000399973 NEFMP07197 916 aa11.21□□□□□ -0.61
USP16-202ENST00000399973 SLC39A6Q13433 755 aa11.21□□□□□ -0.61
USP16-202ENST00000399973 RALBP1Q15311 655 aa11.21□□□□□ -0.61
USP16-202ENST00000399973 AMIGO3Q86WK7 504 aa11.21□□□□□ -0.61
USP16-202ENST00000399973 SLC4A9Q96Q91 983 aa11.21□□□□□ -0.61
USP16-202ENST00000399973 SGIP1Q9BQI5 828 aa11.21□□□□□ -0.61
USP16-202ENST00000399973 FHDC1Q9C0D6 1143 aaPredicted RBP11.21□□□□□ -0.61
USP16-202ENST00000399973 LAMB4A4D0S4 1761 aa11.21□□□□□ -0.62
USP16-202ENST00000399973 SSFA2P28290 1259 aa11.2□□□□□ -0.62
USP16-202ENST00000399973 TTC5Q8N0Z6 440 aa11.2□□□□□ -0.62
USP16-202ENST00000399973 KDM3BQ7LBC6 1761 aa11.2□□□□□ -0.62
USP16-202ENST00000399973 CNTNAP4Q9C0A0 1308 aa11.19□□□□□ -0.62
USP16-202ENST00000399973 MAPK8IP3Q9UPT6 1336 aa11.19□□□□□ -0.62
USP16-202ENST00000399973 FCHSD2O94868 740 aa11.19□□□□□ -0.62
USP16-202ENST00000399973 RTF1Q92541 710 aaKnown RBP11.19□□□□□ -0.62
USP16-202ENST00000399973 RTCBQ9Y3I0 505 aaKnown RBP11.19□□□□□ -0.62
USP16-202ENST00000399973 NPM3O75607 178 aaKnown RBP11.18□□□□□ -0.62
USP16-202ENST00000399973 CRKLP46109 303 aaKnown RBP11.18□□□□□ -0.62
USP16-202ENST00000399973 SCN7AQ01118 1682 aa11.17□□□□□ -0.62
USP16-202ENST00000399973 MCM10Q7L590 875 aa11.17□□□□□ -0.62
USP16-202ENST00000399973 DNAJC10Q8IXB1 793 aa11.17□□□□□ -0.62
USP16-202ENST00000399973 IL17REQ8NFR9 667 aa11.17□□□□□ -0.62
USP16-202ENST00000399973 SYT17Q9BSW7 474 aa11.17□□□□□ -0.62
USP16-202ENST00000399973 CEMIPQ8WUJ3 1361 aa11.16□□□□□ -0.62
USP16-202ENST00000399973 KCNA4P22459 653 aa11.16□□□□□ -0.62
USP16-202ENST00000399973 DCTN1Q14203 1278 aa11.16□□□□□ -0.62
USP16-202ENST00000399973 PELP1Q8IZL8 1130 aaKnown RBP11.16□□□□□ -0.62
USP16-202ENST00000399973 KIF13BQ9NQT8 1826 aa11.15□□□□□ -0.62
USP16-202ENST00000399973 BTBD11A6QL63 1104 aa11.15□□□□□ -0.62
USP16-202ENST00000399973 RPS6KA4O75676 772 aa11.15□□□□□ -0.62
USP16-202ENST00000399973 RFC4P35249 363 aa11.15□□□□□ -0.62
USP16-202ENST00000399973 WDR43Q15061 677 aaKnown RBP eCLIP11.15□□□□□ -0.62
USP16-202ENST00000399973 TRAPPC3LQ5T215 181 aa11.15□□□□□ -0.62
USP16-202ENST00000399973 RC3H1Q5TC82 1133 aaKnown RBP11.15□□□□□ -0.62
USP16-202ENST00000399973 CCDC87Q9NVE4 849 aa11.15□□□□□ -0.62
USP16-202ENST00000399973 BCORQ6W2J9 1755 aa11.15□□□□□ -0.62
USP16-202ENST00000399973 N4BP2Q86UW6 1770 aaPredicted RBP11.15□□□□□ -0.62
USP16-202ENST00000399973 CHD4Q14839 1912 aa11.15□□□□□ -0.62
USP16-202ENST00000399973 HEG1Q9ULI3 1381 aa11.15□□□□□ -0.63
USP16-202ENST00000399973 ZNF790Q6PG37 636 aa11.14□□□□□ -0.63
USP16-202ENST00000399973 NLGN2Q8NFZ4 835 aa11.14□□□□□ -0.63
USP16-202ENST00000399973 ARHGEF1Q92888 912 aaKnown RBP11.14□□□□□ -0.63
USP16-202ENST00000399973 PRKRIP1Q9H875 184 aaPredicted RBP11.14□□□□□ -0.63
USP16-202ENST00000399973 KIAA1551Q9HCM1 1747 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms