RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 RICTORQ6R327 1708 aa12.07□□□□□ -0.48
PTCHD4-202ENST00000398738 FYB1O15117 783 aa12.06□□□□□ -0.48
PTCHD4-202ENST00000398738 SDSP20132 328 aa12.06□□□□□ -0.48
PTCHD4-202ENST00000398738 KRT24Q2M2I5 525 aa12.06□□□□□ -0.48
PTCHD4-202ENST00000398738 ZDHHC9Q9Y397 364 aa12.06□□□□□ -0.48
PTCHD4-202ENST00000398738 CBX1P83916 185 aa12.06□□□□□ -0.48
PTCHD4-202ENST00000398738 TWISTNBQ3B726 338 aaPredicted RBP12.06□□□□□ -0.48
PTCHD4-202ENST00000398738 MRPL50Q8N5N7 158 aaKnown RBP12.06□□□□□ -0.48
PTCHD4-202ENST00000398738 C8orf58Q8NAV2 365 aa12.06□□□□□ -0.48
PTCHD4-202ENST00000398738 TIE1P35590 1138 aa12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 INTS3Q68E01 1043 aaKnown RBP12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 REPIN1Q9BWE0 567 aaKnown RBP12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 CLTCL1P53675 1640 aa12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 CCDC102AQ96A19 550 aa12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 C14orf93Q9H972 538 aaKnown RBP12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 PRDM4Q9UKN5 801 aa12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 CASC1Q6TDU7 716 aa12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 LRSAM1Q6UWE0 723 aa12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 TTC12Q9H892 705 aaPredicted RBP12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 CCDC39Q9UFE4 941 aa12.05□□□□□ -0.48
PTCHD4-202ENST00000398738 ABCC11Q96J66 1382 aa12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 ZNF500O60304 480 aaPredicted RBP12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 IGSF3O75054 1194 aa12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 FOXK1P85037 733 aa12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 ALDH1L2Q3SY69 923 aa12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 TTC22Q5TAA0 569 aa12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 SLC4A10Q6U841 1118 aa12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 CDHR5Q9HBB8 845 aa12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 MBIPQ9NS73 344 aa12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.04□□□□□ -0.48
PTCHD4-202ENST00000398738 IRX5P78411 483 aaPredicted RBP12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 UPF3BQ9BZI7 483 aaKnown RBP12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 USP25Q9UHP3 1055 aa12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 PLCH2O75038 1416 aa12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 CSPP1Q1MSJ5 1256 aa12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 SASS6Q6UVJ0 657 aa12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 TMC2Q8TDI7 906 aa12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 PDLIM2Q96JY6 352 aa12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 MAP7D2Q96T17 732 aa12.03□□□□□ -0.48
PTCHD4-202ENST00000398738 CEP152O94986 1710 aa12.02□□□□□ -0.48
PTCHD4-202ENST00000398738 PLEKHG3A1L390 1219 aa12.02□□□□□ -0.48
PTCHD4-202ENST00000398738 GADD45BO75293 160 aaPredicted RBP12.02□□□□□ -0.48
PTCHD4-202ENST00000398738 CABP1Q9NZU7 370 aa12.02□□□□□ -0.48
PTCHD4-202ENST00000398738 KIAA2012Q0VF49 1180 aa12.02□□□□□ -0.49
PTCHD4-202ENST00000398738 RILPL2Q969X0 211 aa12.02□□□□□ -0.49
PTCHD4-202ENST00000398738 AK7Q96M32 723 aa12.02□□□□□ -0.49
PTCHD4-202ENST00000398738 A0A1W2PP64 1363 aa12.02□□□□□ -0.49
PTCHD4-202ENST00000398738 TMX3Q96JJ7 454 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 CHMP4BQ9H444 224 aaKnown RBP12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 TSPY26PQ9H489 355 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 TRPM2O94759 1503 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 DYNC1I1O14576 645 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 PARP9Q8IXQ6 854 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 TERF2IPQ9NYB0 399 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 ARIH1Q9Y4X5 557 aaPredicted RBP12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 EMILIN1Q9Y6C2 1016 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 TRIM6-TRIM34B2RNG4 842 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 CYP2E1P05181 493 aaPredicted RBP12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 CWC22Q9HCG8 908 aaKnown RBP12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 ANO2Q9NQ90 1003 aa12.01□□□□□ -0.49
PTCHD4-202ENST00000398738 KIF3CO14782 793 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 HS1BP3Q53T59 392 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 CLEC17AQ6ZS10 378 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 PRAM1Q96QH2 718 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 ANKRD36BQ8N2N9 1353 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 POTEFA5A3E0 1075 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 OSBPP22059 807 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 BOLA1Q9Y3E2 137 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 IL16Q14005 1332 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 SHPRHQ149N8 1683 aa12□□□□□ -0.49
PTCHD4-202ENST00000398738 MEIS3Q99687 375 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 IBTKQ9P2D0 1353 aaPredicted RBP11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 ATMINO43313 823 aaPredicted RBP11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 REC8O95072 547 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 DCTPP1Q9H773 170 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 MIS18AQ9NYP9 233 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 CHMP3Q9Y3E7 222 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 CFAP65Q6ZU64 1925 aaKnown RBP11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 FCHSD2O94868 740 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 GNAI1P63096 354 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 NFE2L2Q16236 605 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 HDGFL2Q7Z4V5 671 aaPredicted RBP11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 SPC24Q8NBT2 197 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 API5Q9BZZ5 524 aaKnown RBP11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 EXOC6BQ9Y2D4 811 aa11.99□□□□□ -0.49
PTCHD4-202ENST00000398738 ERC2O15083 957 aa11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 HCLS1P14317 486 aaPredicted RBP11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 TERF1P54274 439 aa11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 RRS1Q15050 365 aaKnown RBP11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 SMYD5Q6GMV2 418 aa11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 PHOX2BQ99453 314 aa11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 PALD1Q9ULE6 856 aa11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 ABCC1P33527 1531 aa11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 F6X3S4 739 aa11.98□□□□□ -0.49
PTCHD4-202ENST00000398738 MAP3K9P80192 1104 aa11.97□□□□□ -0.49
PTCHD4-202ENST00000398738 PPP4R3BQ5MIZ7 849 aa11.97□□□□□ -0.49
PTCHD4-202ENST00000398738 NECTIN2Q92692 538 aa11.97□□□□□ -0.49
PTCHD4-202ENST00000398738 ABCA6Q8N139 1617 aa11.97□□□□□ -0.49
PTCHD4-202ENST00000398738 FANCAO15360 1455 aa11.97□□□□□ -0.49
PTCHD4-202ENST00000398738 MBD3O95983 291 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms