RNA–Protein interactions for RNA: ENST00000396205.6

LMO3-205, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 3,534 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-205ENST00000396205 CHD4Q14839 1912 aa8.91□□□□□ -0.98
LMO3-205ENST00000396205 USHBP1Q8N6Y0 703 aa8.91□□□□□ -0.98
LMO3-205ENST00000396205 PIGBQ92521 554 aa8.91□□□□□ -0.98
LMO3-205ENST00000396205 PPP2R1AP30153 589 aa8.91□□□□□ -0.98
LMO3-205ENST00000396205 DDX54Q8TDD1 881 aaKnown RBP8.91□□□□□ -0.98
LMO3-205ENST00000396205 CFAP53Q96M91 514 aa8.91□□□□□ -0.98
LMO3-205ENST00000396205 FCHSD2O94868 740 aa8.9□□□□□ -0.98
LMO3-205ENST00000396205 ZNF827Q17R98 1081 aa8.9□□□□□ -0.98
LMO3-205ENST00000396205 NCBP3Q53F19 620 aaKnown RBP8.9□□□□□ -0.98
LMO3-205ENST00000396205 KAT6BQ8WYB5 2073 aa8.9□□□□□ -0.98
LMO3-205ENST00000396205 GAS2L2Q8NHY3 880 aa8.9□□□□□ -0.99
LMO3-205ENST00000396205 RSPH6AQ9H0K4 717 aa8.9□□□□□ -0.99
LMO3-205ENST00000396205 TMOD3Q9NYL9 352 aa8.89□□□□□ -0.99
LMO3-205ENST00000396205 CCNL1Q9UK58 526 aaPredicted RBP8.89□□□□□ -0.99
LMO3-205ENST00000396205 ACSBG1Q96GR2 724 aa8.89□□□□□ -0.99
LMO3-205ENST00000396205 ATG3Q9NT62 314 aa8.89□□□□□ -0.99
LMO3-205ENST00000396205 SLC52A2Q9HAB3 445 aa8.88□□□□□ -0.99
LMO3-205ENST00000396205 C1orf141Q5JVX7 400 aa8.88□□□□□ -0.99
LMO3-205ENST00000396205 SULT6B1Q6IMI4 303 aa8.88□□□□□ -0.99
LMO3-205ENST00000396205 PNNQ9H307 717 aaKnown RBP8.88□□□□□ -0.99
LMO3-205ENST00000396205 BABAM1Q9NWV8 329 aa8.88□□□□□ -0.99
LMO3-205ENST00000396205 LOC102724428A0A0B4J2F2 783 aa8.87□□□□□ -0.99
LMO3-205ENST00000396205 SIK1P57059 783 aa8.87□□□□□ -0.99
LMO3-205ENST00000396205 ZNF530Q6P9A1 599 aaPredicted RBP8.87□□□□□ -0.99
LMO3-205ENST00000396205 NUDCQ9Y266 331 aa8.87□□□□□ -0.99
LMO3-205ENST00000396205 RNMTO43148 476 aaKnown RBP8.87□□□□□ -0.99
LMO3-205ENST00000396205 C10orf71Q711Q0 1435 aa8.87□□□□□ -0.99
LMO3-205ENST00000396205 AEBP1Q8IUX7 1158 aa8.87□□□□□ -0.99
LMO3-205ENST00000396205 HEG1Q9ULI3 1381 aa8.86□□□□□ -0.99
LMO3-205ENST00000396205 AFDNP55196 1824 aaKnown RBP8.86□□□□□ -0.99
LMO3-205ENST00000396205 MYBBP1AQ9BQG0 1328 aaKnown RBP8.86□□□□□ -0.99
LMO3-205ENST00000396205 PLEKHF1Q96S99 279 aa8.86□□□□□ -0.99
LMO3-205ENST00000396205 PSDA5PKW4 1024 aaPredicted RBP8.85□□□□□ -0.99
LMO3-205ENST00000396205 PPM1GO15355 546 aaPredicted RBP8.85□□□□□ -0.99
LMO3-205ENST00000396205 ANKRD36CQ5JPF3 1778 aa8.85□□□□□ -0.99
LMO3-205ENST00000396205 MTHFSDQ2M296 383 aaKnown RBP8.85□□□□□ -0.99
LMO3-205ENST00000396205 CC2D1BQ5T0F9 858 aaKnown RBP8.85□□□□□ -0.99
LMO3-205ENST00000396205 GNAT3A8MTJ3 354 aa8.84□□□□□ -0.99
LMO3-205ENST00000396205 TEX13AQ9BXU3 409 aaPredicted RBP8.84□□□□□ -0.99
LMO3-205ENST00000396205 RIC1Q4ADV7 1423 aa8.84□□□□□ -0.99
LMO3-205ENST00000396205 LINC00116Q8NCU8 138 aa8.84□□□□□ -0.99
LMO3-205ENST00000396205 POLR3GLQ9BT43 218 aa8.84□□□□□ -0.99
LMO3-205ENST00000396205 CD2APQ9Y5K6 639 aa8.84□□□□□ -0.99
LMO3-205ENST00000396205 CABP4P57796 275 aa8.84□□□□□ -0.99
LMO3-205ENST00000396205 RPS6KA4O75676 772 aa8.83□□□□□ -1
LMO3-205ENST00000396205 TNNT2P45379 298 aaPredicted RBP8.83□□□□□ -1
LMO3-205ENST00000396205 ITPK1Q13572 414 aa8.83□□□□□ -1
LMO3-205ENST00000396205 SLC4A9Q96Q91 983 aa8.83□□□□□ -1
LMO3-205ENST00000396205 LAMB2P55268 1798 aa8.83□□□□□ -1
LMO3-205ENST00000396205 MPRIPQ6WCQ1 1025 aa8.83□□□□□ -1
LMO3-205ENST00000396205 COL23A1Q86Y22 540 aaPredicted RBP8.82□□□□□ -1
LMO3-205ENST00000396205 PNISRQ8TF01 805 aaKnown RBP8.82□□□□□ -1
LMO3-205ENST00000396205 ASAP1Q9ULH1 1129 aa8.82□□□□□ -1
LMO3-205ENST00000396205 SOS1Q07889 1333 aaPredicted RBP8.82□□□□□ -1
LMO3-205ENST00000396205 IBTKQ9P2D0 1353 aaPredicted RBP8.82□□□□□ -1
LMO3-205ENST00000396205 POLD1P28340 1107 aa8.81□□□□□ -1
LMO3-205ENST00000396205 AK7Q96M32 723 aa8.81□□□□□ -1
LMO3-205ENST00000396205 PXDNLA1KZ92 1463 aa8.81□□□□□ -1
LMO3-205ENST00000396205 ANKRD31Q8N7Z5 1873 aa8.81□□□□□ -1
LMO3-205ENST00000396205 ARXQ96QS3 562 aa8.81□□□□□ -1
LMO3-205ENST00000396205 TFCP2L1Q9NZI6 479 aa8.81□□□□□ -1
LMO3-205ENST00000396205 ERBB4Q15303 1308 aa8.81□□□□□ -1
LMO3-205ENST00000396205 SYTL4Q96C24 671 aaPredicted RBP8.81□□□□□ -1
LMO3-205ENST00000396205 ATP6V1AP38606 617 aa8.8□□□□□ -1
LMO3-205ENST00000396205 IL17REQ8NFR9 667 aa8.8□□□□□ -1
LMO3-205ENST00000396205 USP42Q9H9J4 1324 aaKnown RBP8.8□□□□□ -1
LMO3-205ENST00000396205 CYP19A1P11511 503 aaPredicted RBP8.8□□□□□ -1
LMO3-205ENST00000396205 INTS5Q6P9B9 1019 aaKnown RBP8.8□□□□□ -1
LMO3-205ENST00000396205 NFATC2IPQ8NCF5 419 aa8.8□□□□□ -1
LMO3-205ENST00000396205 PRKAR2BP31323 418 aa8.79□□□□□ -1
LMO3-205ENST00000396205 CACNA1FO60840 1977 aa8.79□□□□□ -1
LMO3-205ENST00000396205 A0A087WZG4 1122 aa8.79□□□□□ -1
LMO3-205ENST00000396205 NLGN1Q8N2Q7 840 aa8.79□□□□□ -1
LMO3-205ENST00000396205 PDZRN3Q9UPQ7 1066 aa8.79□□□□□ -1
LMO3-205ENST00000396205 RTCBQ9Y3I0 505 aaKnown RBP8.79□□□□□ -1
LMO3-205ENST00000396205 N4BP2Q86UW6 1770 aaPredicted RBP8.79□□□□□ -1
LMO3-205ENST00000396205 LMOD3Q0VAK6 560 aa8.79□□□□□ -1
LMO3-205ENST00000396205 ZNF790Q6PG37 636 aa8.79□□□□□ -1
LMO3-205ENST00000396205 COL11A2P13942 1736 aaPredicted RBP8.78□□□□□ -1
LMO3-205ENST00000396205 ADCY9O60503 1353 aa8.78□□□□□ -1
LMO3-205ENST00000396205 COL15A1P39059 1388 aa8.78□□□□□ -1
LMO3-205ENST00000396205 NUP98P52948 1817 aa8.78□□□□□ -1
LMO3-205ENST00000396205 NFE2L2Q16236 605 aa8.78□□□□□ -1
LMO3-205ENST00000396205 SYT17Q9BSW7 474 aa8.78□□□□□ -1
LMO3-205ENST00000396205 PRKRIP1Q9H875 184 aaPredicted RBP8.78□□□□□ -1
LMO3-205ENST00000396205 DICER1Q9UPY3 1922 aaKnown RBP8.78□□□□□ -1
LMO3-205ENST00000396205 HMOX1P09601 288 aa8.78□□□□□ -1
LMO3-205ENST00000396205 TGFB2P61812 414 aa8.78□□□□□ -1
LMO3-205ENST00000396205 PDGFDQ9GZP0 370 aaPredicted RBP8.78□□□□□ -1
LMO3-205ENST00000396205 LGR6Q9HBX8 967 aa8.78□□□□□ -1
LMO3-205ENST00000396205 CCDC87Q9NVE4 849 aa8.78□□□□□ -1
LMO3-205ENST00000396205 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.77□□□□□ -1
LMO3-205ENST00000396205 IL6STP40189 918 aaPredicted RBP8.77□□□□□ -1
LMO3-205ENST00000396205 CRKLP46109 303 aaKnown RBP8.77□□□□□ -1
LMO3-205ENST00000396205 TRAPPC3LQ5T215 181 aa8.77□□□□□ -1.01
LMO3-205ENST00000396205 PHACTR3Q96KR7 559 aa8.77□□□□□ -1.01
LMO3-205ENST00000396205 FMNL2Q96PY5 1086 aa8.77□□□□□ -1.01
LMO3-205ENST00000396205 ATP10DQ9P241 1426 aa8.77□□□□□ -1.01
LMO3-205ENST00000396205 TNRC6CQ9HCJ0 1690 aaKnown RBP8.77□□□□□ -1.01
LMO3-205ENST00000396205 ZBTB7AO95365 584 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms