RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SPATA24Q86W54 205 aa13.77□□□□□ -0.21
SYNPO-202ENST00000394243 CCDC12Q8WUD4 166 aaPredicted RBP13.77□□□□□ -0.21
SYNPO-202ENST00000394243 BMP2KQ9NSY1 1161 aaPredicted RBP13.77□□□□□ -0.21
SYNPO-202ENST00000394243 CCDC171Q6TFL3 1326 aa13.77□□□□□ -0.21
SYNPO-202ENST00000394243 LRSAM1Q6UWE0 723 aa13.77□□□□□ -0.21
SYNPO-202ENST00000394243 HCLS1P14317 486 aaPredicted RBP13.77□□□□□ -0.21
SYNPO-202ENST00000394243 TDRD9Q8NDG6 1382 aaKnown RBP13.76□□□□□ -0.21
SYNPO-202ENST00000394243 CACNA2D4Q7Z3S7 1137 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 RUSC2Q8N2Y8 1516 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 GOLGA6L9A6NEM1 432 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 CAPN2P17655 700 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 TDO2P48775 406 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 CEP57Q86XR8 500 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 STX1AQ16623 288 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 FKBP15Q5T1M5 1219 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 SMAP1Q8IYB5 467 aaPredicted RBP13.76□□□□□ -0.21
SYNPO-202ENST00000394243 CEP131Q9UPN4 1083 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 ZNF165P49910 485 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 PHF23Q9BUL5 403 aaPredicted RBP13.76□□□□□ -0.21
SYNPO-202ENST00000394243 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.76□□□□□ -0.21
SYNPO-202ENST00000394243 V9GYY5 206 aaPredicted RBP13.76□□□□□ -0.21
SYNPO-202ENST00000394243 PLEKHH1Q9ULM0 1364 aa13.76□□□□□ -0.21
SYNPO-202ENST00000394243 NAA15Q9BXJ9 866 aaKnown RBP13.76□□□□□ -0.21
SYNPO-202ENST00000394243 DDX19AQ9NUU7 478 aaKnown RBP13.76□□□□□ -0.21
SYNPO-202ENST00000394243 HSF2BPO75031 334 aa13.75□□□□□ -0.21
SYNPO-202ENST00000394243 STAMBPO95630 424 aa13.75□□□□□ -0.21
SYNPO-202ENST00000394243 GUCY1B3Q02153 619 aa13.75□□□□□ -0.21
SYNPO-202ENST00000394243 BIN1O00499 593 aa13.75□□□□□ -0.21
SYNPO-202ENST00000394243 YEATS4O95619 227 aa13.75□□□□□ -0.21
SYNPO-202ENST00000394243 MATR3P43243 847 aaKnown RBP eCLIP13.75□□□□□ -0.21
SYNPO-202ENST00000394243 SLFN5Q08AF3 891 aa13.75□□□□□ -0.21
SYNPO-202ENST00000394243 ZKSCAN5Q9Y2L8 839 aa13.75□□□□□ -0.21
SYNPO-202ENST00000394243 DDX54Q8TDD1 881 aaKnown RBP13.75□□□□□ -0.21
SYNPO-202ENST00000394243 SRGAP3O43295 1099 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 NUTM1Q86Y26 1132 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 NACAP1Q9BZK3 213 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 MROH2BQ7Z745 1585 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 FKBP4Q02790 459 aaKnown RBP eCLIP13.74□□□□□ -0.21
SYNPO-202ENST00000394243 SOGA3Q5TF21 947 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 SMARCA5O60264 1052 aaPredicted RBP13.74□□□□□ -0.21
SYNPO-202ENST00000394243 PRPF40BQ6NWY9 871 aaKnown RBP13.74□□□□□ -0.21
SYNPO-202ENST00000394243 CEP112Q8N8E3 955 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 FSIP1Q8NA03 581 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 PIBF1Q8WXW3 757 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 TFIP11Q9UBB9 837 aaKnown RBP13.74□□□□□ -0.21
SYNPO-202ENST00000394243 HDGFL1Q5TGJ6 251 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 GIMAP6Q6P9H5 292 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 CCDC150Q8NCX0 1101 aa13.74□□□□□ -0.21
SYNPO-202ENST00000394243 LARP6Q9BRS8 491 aaKnown RBP13.74□□□□□ -0.21
SYNPO-202ENST00000394243 PSME1Q06323 249 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 GAS2L2Q8NHY3 880 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 RAPGEF4Q8WZA2 1011 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 WASF1Q92558 559 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 RASSF4Q9H2L5 321 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 CNNM1Q9NRU3 951 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 RNF216Q9NWF9 866 aaPredicted RBP13.73□□□□□ -0.21
SYNPO-202ENST00000394243 JADE2Q9NQC1 790 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 ZBTB9Q96C00 473 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 SH2B1Q9NRF2 756 aaPredicted RBP13.73□□□□□ -0.21
SYNPO-202ENST00000394243 CTNNA3Q9UI47 895 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 EXOC6BQ9Y2D4 811 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 ATP2B2Q01814 1243 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 MSL1Q68DK7 614 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 FBF1Q8TES7 1133 aa13.73□□□□□ -0.21
SYNPO-202ENST00000394243 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.73□□□□□ -0.21
SYNPO-202ENST00000394243 UBE2HP62256 183 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 TTC12Q9H892 705 aaPredicted RBP13.72□□□□□ -0.21
SYNPO-202ENST00000394243 DNAI1Q9UI46 699 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 CETN2P41208 172 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 RPAP2Q8IXW5 612 aaPredicted RBP13.72□□□□□ -0.21
SYNPO-202ENST00000394243 CNNM3Q8NE01 707 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 CCDC6Q16204 474 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 ISM2Q6H9L7 571 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 ATRIPQ8WXE1 791 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 ALS2CR12Q96Q35 445 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 HYPKQ9NX55 129 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 SERPINA10Q9UK55 444 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 TDRD12Q587J7 1177 aaKnown RBP13.72□□□□□ -0.21
SYNPO-202ENST00000394243 WWC2Q6AWC2 1192 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 CTNNBL1Q8WYA6 563 aaPredicted RBP13.72□□□□□ -0.21
SYNPO-202ENST00000394243 NACADO15069 1562 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 FAM177BA6PVY3 158 aa13.72□□□□□ -0.21
SYNPO-202ENST00000394243 C6orf163Q5TEZ5 329 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 LIMCH1Q9UPQ0 1083 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 SKILP12757 684 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 OGFRQ9NZT2 677 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 VPS18Q9P253 973 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 CCDC160A6NGH7 325 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 VGLL3A8MV65 326 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 CCDC186Q7Z3E2 898 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 PPM1EQ8WY54 764 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 FGD6Q6ZV73 1430 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 NUTM2GQ5VZR2 741 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 OTUD6BQ8N6M0 293 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 UBAC1Q9BSL1 405 aa13.71□□□□□ -0.21
SYNPO-202ENST00000394243 SLU7O95391 586 aaKnown RBP13.71□□□□□ -0.22
SYNPO-202ENST00000394243 TMEM132EQ6IEE7 984 aa13.71□□□□□ -0.22
SYNPO-202ENST00000394243 SCLT1Q96NL6 688 aa13.71□□□□□ -0.22
SYNPO-202ENST00000394243 CLGNO14967 610 aa13.71□□□□□ -0.22
SYNPO-202ENST00000394243 STX6O43752 255 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms